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Report for Sequence Feature Glyma.09g007400

Feature Type:gene_model
Chromosome:Gm09
Start:535039
stop:538786
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.09g007400
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G14620.1AT decoy JGI N/AIEA
GO:0005762GO-cc mitochondrial large ribosomal subunit EnsemblGenomesN/AIEA
GO:0003735GO-mf structural constituent of ribosome EnsemblGenomesN/AIEA
KOG4548 KOG Mitochondrial ribosomal protein L17 JGI N/AIEA
PTHR13124Panther 39S RIBOSOMAL PROTEIN L46, MITOCHONDRIAL PRECURSOR-RELATED JGI N/AIEA
PTHR13124:SF2Panther JGI N/AIEA
PF11788PFAM 39S mitochondrial ribosomal protein L46 JGI N/AIEA

Expression Patterns of Glyma.09g007400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.09g007400
ParalogEvidenceComments
Glyma.15g111800 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.09g007400 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma09g00990 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.09g007400
>Glyma.09g007400.1 sequence-type=CDS polypeptide=Glyma.09g007400.1.p locus=Glyma.09g007400 ID=Glyma.09g007400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAGATGTCATTGGTTCGACCTCTCTTGACAAAGCGAGGGTTCAGCACAAGCTCTGAGAACCTTGTTGCTTCTGTGCTCTTTGAGAGACTGCCAGTGGTCATTCCCAAAATTGACCCTGTAGTCTATGCATTTCAAGAATTCTCGTTTCGATGGCGACAACAATATCAACGCAGATATCCTGATGAATTTCTAGACAAATCTGATGCAAGGGGGAAAGGTGATTATCAGATTGACTATGTGCCAGCACCACGAGTCACTGAAGCTGACAAAAACAATGATCGAAGGTCATTACAAAGAGCTCTTGATAGAAGACTATACCTTCTCCTCTATGGTATTGCATATGGTGCTCCAAGCGGGAAGCCTGTGTGGCATTTTCCTGAGAAAGTTTATGAATCCGAGGACAACATGCGCAAGTGTGCAGAGTCTGCATTGAAGTCAGTCTTAGGAGATCTTTCTAATACATATTTTGTTGGAAATGCTCCAATGGCCCATACGGTTGTTCAGCCTACAGAAGACCAGTCTAGATCCACATCTTTTAAGAGATTCTTCTTCAAGTCTCAAGTTATTGCTAAAAACAAATTCAACATTGGAAAATGTGAGGATCATGTCTGGGTGACAAAGGATGAATTGATGGAGTATTTTCCCGAGCAAGCTGAGTTTTTGAACAAGATGATCATTAGCTGA
Predicted protein sequences of Glyma.09g007400
>Glyma.09g007400.1.p sequence-type=predicted peptide transcript=Glyma.09g007400.1 locus=Glyma.09g007400 ID=Glyma.09g007400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MKMSLVRPLLTKRGFSTSSENLVASVLFERLPVVIPKIDPVVYAFQEFSFRWRQQYQRRYPDEFLDKSDARGKGDYQIDYVPAPRVTEADKNNDRRSLQRALDRRLYLLLYGIAYGAPSGKPVWHFPEKVYESEDNMRKCAESALKSVLGDLSNTYFVGNAPMAHTVVQPTEDQSRSTSFKRFFFKSQVIAKNKFNIGKCEDHVWVTKDELMEYFPEQAEFLNKMIIS*






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