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Report for Sequence Feature Glyma.09g005200

Feature Type:gene_model
Chromosome:Gm09
Start:414116
stop:416968
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.09g005200
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G04470.1AT Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein JGI N/AIEA
GO:0005779GO-cc integral component of peroxisomal membrane EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane JGI N/AIEA
KOG1944 KOG Peroxisomal membrane protein MPV17 and related proteins JGI N/AIEA
PTHR11266Panther PEROXISOMAL MEMBRANE PROTEIN 2, PXMP2 (MPV17) JGI N/AIEA
PF04117PFAM Mpv17 / PMP22 family JGI N/AIEA

Expression Patterns of Glyma.09g005200
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.09g005200
ParalogEvidenceComments
Glyma.15g109800 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.09g005200 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma09g00770 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.09g005200
>Glyma.09g005200.1 sequence-type=CDS polypeptide=Glyma.09g005200.1.p locus=Glyma.09g005200 ID=Glyma.09g005200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGTTCTTTGGCAAAGAAGGGACTCAACAATTACGTCAAACAGCTCCAGCAACACCCTTTGAGAACCAAGGTAATCACTGCAGGGGTACTATCAGCGATCAGCGATGTTGTGTCTCAGAAACTTACCGGGATACAGAAAATTCAACTCAAACGACTTCTTTTCAAAGTGATTTTTGGAGCCGCTTATCTTGGACCCTTTGGACACTTTTTTCATTTAATACTGGATAAAATTTTCAAAGGAAAGAGAGATTCAAAAACTGTGGCTAAGAAGGTTCTGATTGAACAGTTAACATCCAATCCTTGGAACAATTTGCTTTTCATGATTTACTACGGATTAGTTGTTGAAGGACAACCTTGGGTGAATGTGAAAGCTAAAGTTAAGAAGGATTATCTATCAGTGCAGTATACATCATGGACGGTCTGGCCTGTTGTGGGGTGGATAAATCACAAATTCATGCCTCTTCATTTCCGTGTTGTTTTCCAAAGCTTAGTAGCATTTTTCTGGGGAGTATTCTTGAACCTTCGAGCACGATCTATGGCATTGATTAAAGCCTGA
Predicted protein sequences of Glyma.09g005200
>Glyma.09g005200.1.p sequence-type=predicted peptide transcript=Glyma.09g005200.1 locus=Glyma.09g005200 ID=Glyma.09g005200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGSLAKKGLNNYVKQLQQHPLRTKVITAGVLSAISDVVSQKLTGIQKIQLKRLLFKVIFGAAYLGPFGHFFHLILDKIFKGKRDSKTVAKKVLIEQLTSNPWNNLLFMIYYGLVVEGQPWVNVKAKVKKDYLSVQYTSWTVWPVVGWINHKFMPLHFRVVFQSLVAFFWGVFLNLRARSMALIKA*






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