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Report for Sequence Feature Glyma.09g004700

Feature Type:gene_model
Chromosome:Gm09
Start:384995
stop:387142
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.09g004700
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G11860.1AT Glycine cleavage T-protein family JGI N/AIEA
GO:0006546GO-bp glycine catabolic process EnsemblGenomesN/AIEA
GO:0006546GO-bp glycine catabolic process JGI N/AIEA
GO:0032259GO-bp methylation EnsemblGenomesN/AIEA
GO:0005737GO-cc cytoplasm JGI N/AIEA
GO:0005739GO-cc mitochondrion EnsemblGenomesN/AIEA
GO:0004047GO-mf aminomethyltransferase activity EnsemblGenomesN/AIEA
GO:0004047GO-mf aminomethyltransferase activity JGI N/AIEA
GO:0005515GO-mf protein binding EnsemblGenomesN/AIEA
GO:0008483GO-mf transaminase activity EnsemblGenomesN/AIEA
GO:0016740GO-mf transferase activity EnsemblGenomesN/AIEA
KOG2770 KOG Aminomethyl transferase JGI N/AIEA
PTHR13847Panther FAD NAD BINDING OXIDOREDUCTASES JGI N/AIEA
PTHR13847:SF5Panther AMINOMETHYLTRANSFERASE, MITOCHONDRIAL JGI N/AIEA
PF01571PFAM Aminomethyltransferase folate-binding domain JGI N/AIEA
PF08669PFAM Glycine cleavage T-protein C-terminal barrel domain JGI N/AIEA
GLYCLEAV-PWYSoyCyc9 glycine cleavage Plant Metabolic Network ISS
GN7V-59723SoyCyc9-rxn aminomethyltransferase Plant Metabolic Network ISS

Expression Patterns of Glyma.09g004700
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.09g004700 not represented in the dataset
Glyma.09g004700 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.09g004700
ParalogEvidenceComments
Glyma.15g109300 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.09g004700 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma09g00711 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.09g004700
>Glyma.09g004700.1 sequence-type=CDS polypeptide=Glyma.09g004700.1.p locus=Glyma.09g004700 ID=Glyma.09g004700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAGGGGGGGCTTATGGCAACTCGGGCAATCAATCACTCGCCGTCTTGCCCAGGGTGATAAGAAGGCTGTTGCTCGTAGGTATTTTGCCTCAGATGCTGAGCTGAAAAAGACAGTCGTTTATGACTTCCATGTTGCTAATGGAGGGAAGATGGTGCCATTTGCTGGATGGAGCATGCCAATTCAATATAAGGACTCAATTATGGACTCAACCCTTAACTGTAGGGAGAATGGTAGCCTTTTTGATGTTTCCCATATGTGCGGGCTAAGCCTCAAGGGAAAGGACTCTGTTCCGTTCCTTGAAAAGCTTGTCATTGCTGATGTTGCTGGGCTTGCCCCTGGAACTGGTTCATTGACTGTCTTCACAAATGAAAAAGGAGGGGCAATTGATGATTCAGTTATTACCAAGGTGAAGGATGATCACATATACTTGGTTGTGAATGCTGGATGCAGGGATAAAGATCTGGCTCATATTGAGGAGCATATGAAGGCATTCAAGGCCAAAGGTGGTGATGTGTCATGGCACATCCATGATGAGAGATCTCTTCTTGCTCTGCAGATATTTGGATGTTGTGTAATTGCACATTCCTTTGCACCTACTTCTTGTTATCTATTTTCCCATGACCTTGTCATGGTCCTCTTGCTGCTCCGGTTTCTTCAACACCTGACAAAAGCAGATTTAAGCAAGATGTACTTTGGGGGTTTCCAAGTGTTGGACATCAATGGTGTGCAGTGCTTTCTCACACGGACAGGGTATACTGGGGAAGATGGATTTGAGATATCAATTCCCTCAGAGAGTGCAGTGGATCTTGCCAAGGCAATTCTTGAAAAATCTGAAGGGAAGATAAGATTGACAGGATTAGGTGCTCGAGATAGTCTACGCCTTGAAGCTGGATTGTGTTTATATGGCAATGACTTGGAACAGCACATTACACCTATTGAGGCAGGACTGACATGGGCCATAGGGAAGAGAAGGAGAGCAGAAGGGGGTTTTCTAGGTGCTGATGTTATACTAAAACAGCTTGAAGAAGGCCCTAAGATCAGGCGTGTTGGTTTCTTTTCTTCTGGCCCTCCTCCCAGAAGCCACAGTGAGATTCAAGATGAAGGAGGGAACAACATTGGGGAAGTCACAAGTGGCGGATTCAGTCCTTGCCTCAAGAAGAACATAGCCATTGGATATGTGAAATCAGGATTGCACAAAGCAGGCACCAAAGTAAAGATTATTATTCGAGGAAAGTCTAATGAAGGAGTTGTTACAAAGATGCCATTTGTACCAACAAAATACTATAAGCCGTCCTAA
Predicted protein sequences of Glyma.09g004700
>Glyma.09g004700.1.p sequence-type=predicted peptide transcript=Glyma.09g004700.1 locus=Glyma.09g004700 ID=Glyma.09g004700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MRGGLWQLGQSITRRLAQGDKKAVARRYFASDAELKKTVVYDFHVANGGKMVPFAGWSMPIQYKDSIMDSTLNCRENGSLFDVSHMCGLSLKGKDSVPFLEKLVIADVAGLAPGTGSLTVFTNEKGGAIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEEHMKAFKAKGGDVSWHIHDERSLLALQIFGCCVIAHSFAPTSCYLFSHDLVMVLLLLRFLQHLTKADLSKMYFGGFQVLDINGVQCFLTRTGYTGEDGFEISIPSESAVDLAKAILEKSEGKIRLTGLGARDSLRLEAGLCLYGNDLEQHITPIEAGLTWAIGKRRRAEGGFLGADVILKQLEEGPKIRRVGFFSSGPPPRSHSEIQDEGGNNIGEVTSGGFSPCLKKNIAIGYVKSGLHKAGTKVKIIIRGKSNEGVVTKMPFVPTKYYKPS*






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