Glyma.09g004400

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Report for Sequence Feature Glyma.09g004400

Feature Type:	gene_model
Chromosome:	Gm09
Start:	351120
stop:	354290
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.09g004400

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G21990.1	AT	APS reductase 3	JGI	N/A	IEA
GO:0008152	GO-bp	metabolic process	EnsemblGenomes	N/A	IEA
GO:0008152	GO-bp	metabolic process	JGI	N/A	IEA
GO:0019419	GO-bp	sulfate reduction	EnsemblGenomes	N/A	IEA
GO:0045454	GO-bp	cell redox homeostasis	EnsemblGenomes	N/A	IEA
GO:0045454	GO-bp	cell redox homeostasis	JGI	N/A	IEA
GO:0055114	GO-bp	oxidation-reduction process	EnsemblGenomes	N/A	IEA
GO:0005737	GO-cc	cytoplasm	EnsemblGenomes	N/A	IEA
GO:0003824	GO-mf	catalytic activity	EnsemblGenomes	N/A	IEA
GO:0003824	GO-mf	catalytic activity	JGI	N/A	IEA
GO:0004604	GO-mf	phosphoadenylyl-sulfate reductase (thioredoxin) activity	EnsemblGenomes	N/A	IEA
GO:0016671	GO-mf	oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	EnsemblGenomes	N/A	IEA
KOG0189	KOG	Phosphoadenosine phosphosulfate reductase	JGI	N/A	IEA
PTHR18929	Panther	PROTEIN DISULFIDE ISOMERASE	JGI	N/A	IEA
PF00085	PFAM	Thioredoxin	JGI	N/A	IEA
PF01507	PFAM	Phosphoadenosine phosphosulfate reductase family	JGI	N/A	IEA
GN7V-53124	SoyCyc9-rxn	adenylyl-sulfate reductase (thioredoxin)	Plant Metabolic Network		ISS

Expression Patterns of Glyma.09g004400

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.09g004400 not represented in the dataset	Glyma.09g004400 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.09g004400

Paralog	Evidence	Comments
Glyma.15g108700	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.09g004400 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma09g00670	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.09g004400

Limit To All Plant Sequences

>Glyma.09g004400.2 sequence-type=transcript locus=Glyma.09g004400 ID=Glyma.09g004400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
CCTGAAAAAAACCAACAGAATCTACTCTCTTTTTTTCTACCTTAGATTCCTTCTCCAACAATGGCTCTCGCCGTTTCCACTACTTCTTCCTCTTCAGCAGCTGCTGCAGCTTCTAGCTCCTTCTTCTCTCGTCTCGGATCTTCCTCCGACGCAAAAGCTCCTCAAATCGGTTCGTTTCGGTTTCCGGAGAGGTCGCTTGTTTCGTCTGTTGTTGTCAATGTAACTCAACGACGCTCCTTGGTGAGGCCACTCAACGCCGAACCGCAACGGAACGATTCTATTGTTCCTCTTGCAGCAACTATCGTTGCTCCTGAGGTTGAGAAGGAAGAGGAAGATTTTGAGCAAATAGCGAAAGACCTTGAAAATGCATCTCCTCTTGAAATTATGGATAGGGCCCTCGAGAAATTTGGGAACGACATCGCTATTGCATTTAGTGGTGCTGAAGATGTTGCTTTGATTGAGTATGCACATTTGACGGGTCGACCCTACAGAGTGTTTAGTCTTGACACTGGGAGACTGAATCCAGAAACCTACAAATTTTTTGATGCGGTTGAGAAGCATTATGGAATTCACATTGAGTACATGTTCCCTGATGCGGTTGAGGTTCAGGCATTAGTAAGAACTAAAGGGCTCTTCTCATTTTACGAGGATGGGCATCAAGAGTGCTGCCGAGTAAGGAAGGTGAGGCCCTTGAGGAGAGCCCTTAAGGGTCTCAAAGCATGGATCACTGGACAGAGAAAAGATCAGTCTCCTGGTACTAGGTCTGAAATCCCTGTTGTCCAGGTTGATCCTGTTTTTGAGGGACTGGATGGTGGAATTGGCAGCCTGGTGAAGTGGAACCCGGTTGCAAATGTTAATGGTCTAGACATATGGAGCTTCCTTAGGACCATGGATGTTCCTGTAAATTCATTGCATTCCCAAGGATATGTTTCGATTGGCTGTGAGCCGTGCACAAGGCCAGTTTTACCGGGTCAACATGAAAGAGAAGGAAGGTGGTGGTGGGAGGATGCCAAAGCCAAGGAGTGTGGTCTTCACAAAGGTAATATAAAACATGAAGATGCTGCCCAGCTTAATGGAAATGGGGCCTCCCAAGCAAATGGATCTGCCACTGTCGCTGACATTTTCAACTCCCAGGATGTGGTCAGCTTGAGCAGGTCTGGGATTGAGAATTTGGCAAAATTGGAGAACCGAAAAGAACCCTGGCTTGTTGTGCTCTATGCACCATGGTGCCGCTTCTGTCAGGCTATGGAGGAATCATATGTTGATTTGGCAGAAAAGTTAGCTGGGTCAGGAGTGAAGGTTGCAAAATTCAGAGCGGATGGAGACCAGAAGGAATATGCAAAGACTGAACTGCAGTTGGGAAGCTTCCCCACAATACTACTCTTCCCCAAACACTCTTCTCAACCAATTAAGTACCCTTCGGAAAAGAGAGATGTTGATTCATTGACGGCATTCGTGAATGCTTTACGGTGATGGTTAATTGAGTATCTTGCTCAATGTTCCGTCGTACAATACCGGCAATAAATTTCTTCACAGTTTTGGCAATTCACTGAAAATGGGAATGGCAGTTTTGACAGCAAAACGAAGATTCTCAGCTAGAAGTATCCCTGTATAGGTTTAGATAATCTTCCTCACAAATATAATTGTAGTAGTCATTCTGAGAATGTGATTTCCTGTTTTGTTAGATGAGTAGAGTTATGGTTGTATTATGTTGTTTCTTCACTATCATAATCTACGTTTTTAGTTTTGCCAGATTTCCAAGAACGAAGGCTAAATAGTTCAGCTTATGTTCCGTGTGAAATAATAGTGTCCCTGTCTCGTATGTTTTCATGGAATGGTTCTGTTAAAATGTTCTAGCCACAACGGAACAAAAACCAATTTGGATTTGATCATTGGTTTCCTATGTTTCTTTCCTGCAATGAGTATGCAATAACATGTATCCGTGCAATATTACTTTTTTCAAG

Coding sequences of Glyma.09g004400

Limit To All Plant Sequences

>Glyma.09g004400.1 sequence-type=CDS polypeptide=Glyma.09g004400.1.p locus=Glyma.09g004400 ID=Glyma.09g004400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTCTCGCCGTTTCCACTACTTCTTCCTCTTCAGCAGCTGCTGCAGCTTCTAGCTCCTTCTTCTCTCGTCTCGGATCTTCCTCCGACGCAAAAGCTCCTCAAATCGGTTCGTTTCGGTTTCCGGAGAGGTCGCTTGTTTCGTCTGTTGTTGTCAATGTAACTCAACGACGCTCCTTGGTGAGGCCACTCAACGCCGAACCGCAACGGAACGATTCTATTGTTCCTCTTGCAGCAACTATCGTTGCTCCTGAGGTTGAGAAGGAAGAGGAAGATTTTGAGCAAATAGCGAAAGACCTTGAAAATGCATCTCCTCTTGAAATTATGGATAGGGCCCTCGAGAAATTTGGGAACGACATCGCTATTGCATTTAGTGGTGCTGAAGATGTTGCTTTGATTGAGTATGCACATTTGACGGGTCGACCCTACAGAGTGTTTAGTCTTGACACTGGGAGACTGAATCCAGAAACCTACAAATTTTTTGATGCGGTTGAGAAGCATTATGGAATTCACATTGAGTACATGTTCCCTGATGCGGTTGAGGTTCAGGCATTAGTAAGAACTAAAGGGCTCTTCTCATTTTACGAGGATGGGCATCAAGAGTGCTGCCGAGTAAGGAAGGTGAGGCCCTTGAGGAGAGCCCTTAAGGGTCTCAAAGCATGGATCACTGGACAGAGAAAAGATCAGTCTCCTGGTACTAGGTCTGAAATCCCTGTTGTCCAGGTTGATCCTGTTTTTGAGGGACTGGATGGTGGAATTGGCAGCCTGGTGAAGTGGAACCCGGTTGCAAATGTTAATGGTCTAGACATATGGAGCTTCCTTAGGACCATGGATGTTCCTGTAAATTCATTGCATTCCCAAGGATATGTTTCGATTGGCTGTGAGCCGTGCACAAGGCCAGTTTTACCGGGTCAACATGAAAGAGAAGGAAGGTGGTGGTGGGAGGATGCCAAAGCCAAGGAGTGTGGTCTTCACAAAGGTAATATAAAACATGAAGATGCTGCCCAGCTTAATGGAAATGGGGCCTCCCAAGCAAATGGATCTGCCACTGTCGCTGACATTTTCAACTCCCAGGATGTGGTCAGCTTGAGCAGGTCTGGGATTGAGAATTTGGCAAAATTGGAGAACCGAAAAGAACCCTGGCTTGTTGTGCTCTATGCACCATGGTGCCGCTTCTGTCAGGCTATGGAGGAATCATATGTTGATTTGGCAGAAAAGTTAGCTGGGTCAGGAGTGAAGGTTGCAAAATTCAGAGCGGATGGAGACCAGAAGGAATATGCAAAGACTGAACTGCAGTTGGGAAGCTTCCCCACAATACTACTCTTCCCCAAACACTCTTCTCAACCAATTAAGTACCCTTCGGAAAAGAGAGATGTTGATTCATTGACGGCATTCGTGAATGCTTTACGGTGA

>Glyma.09g004400.2 sequence-type=CDS polypeptide=Glyma.09g004400.2.p locus=Glyma.09g004400 ID=Glyma.09g004400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTCTCGCCGTTTCCACTACTTCTTCCTCTTCAGCAGCTGCTGCAGCTTCTAGCTCCTTCTTCTCTCGTCTCGGATCTTCCTCCGACGCAAAAGCTCCTCAAATCGGTTCGTTTCGGTTTCCGGAGAGGTCGCTTGTTTCGTCTGTTGTTGTCAATGTAACTCAACGACGCTCCTTGGTGAGGCCACTCAACGCCGAACCGCAACGGAACGATTCTATTGTTCCTCTTGCAGCAACTATCGTTGCTCCTGAGGTTGAGAAGGAAGAGGAAGATTTTGAGCAAATAGCGAAAGACCTTGAAAATGCATCTCCTCTTGAAATTATGGATAGGGCCCTCGAGAAATTTGGGAACGACATCGCTATTGCATTTAGTGGTGCTGAAGATGTTGCTTTGATTGAGTATGCACATTTGACGGGTCGACCCTACAGAGTGTTTAGTCTTGACACTGGGAGACTGAATCCAGAAACCTACAAATTTTTTGATGCGGTTGAGAAGCATTATGGAATTCACATTGAGTACATGTTCCCTGATGCGGTTGAGGTTCAGGCATTAGTAAGAACTAAAGGGCTCTTCTCATTTTACGAGGATGGGCATCAAGAGTGCTGCCGAGTAAGGAAGGTGAGGCCCTTGAGGAGAGCCCTTAAGGGTCTCAAAGCATGGATCACTGGACAGAGAAAAGATCAGTCTCCTGGTACTAGGTCTGAAATCCCTGTTGTCCAGGTTGATCCTGTTTTTGAGGGACTGGATGGTGGAATTGGCAGCCTGGTGAAGTGGAACCCGGTTGCAAATGTTAATGGTCTAGACATATGGAGCTTCCTTAGGACCATGGATGTTCCTGTAAATTCATTGCATTCCCAAGGATATGTTTCGATTGGCTGTGAGCCGTGCACAAGGCCAGTTTTACCGGGTCAACATGAAAGAGAAGGAAGGTGGTGGTGGGAGGATGCCAAAGCCAAGGAGTGTGGTCTTCACAAAGGTAATATAAAACATGAAGATGCTGCCCAGCTTAATGGAAATGGGGCCTCCCAAGCAAATGGATCTGCCACTGTCGCTGACATTTTCAACTCCCAGGATGTGGTCAGCTTGAGCAGGTCTGGGATTGAGAATTTGGCAAAATTGGAGAACCGAAAAGAACCCTGGCTTGTTGTGCTCTATGCACCATGGTGCCGCTTCTGTCAGGCTATGGAGGAATCATATGTTGATTTGGCAGAAAAGTTAGCTGGGTCAGGAGTGAAGGTTGCAAAATTCAGAGCGGATGGAGACCAGAAGGAATATGCAAAGACTGAACTGCAGTTGGGAAGCTTCCCCACAATACTACTCTTCCCCAAACACTCTTCTCAACCAATTAAGTACCCTTCGGAAAAGAGAGATGTTGATTCATTGACGGCATTCGTGAATGCTTTACGGTGA

Predicted protein sequences of Glyma.09g004400

Limit To All Plant Sequences

>Glyma.09g004400.1.p sequence-type=predicted peptide transcript=Glyma.09g004400.1 locus=Glyma.09g004400 ID=Glyma.09g004400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MALAVSTTSSSSAAAAASSSFFSRLGSSSDAKAPQIGSFRFPERSLVSSVVVNVTQRRSLVRPLNAEPQRNDSIVPLAATIVAPEVEKEEEDFEQIAKDLENASPLEIMDRALEKFGNDIAIAFSGAEDVALIEYAHLTGRPYRVFSLDTGRLNPETYKFFDAVEKHYGIHIEYMFPDAVEVQALVRTKGLFSFYEDGHQECCRVRKVRPLRRALKGLKAWITGQRKDQSPGTRSEIPVVQVDPVFEGLDGGIGSLVKWNPVANVNGLDIWSFLRTMDVPVNSLHSQGYVSIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGLHKGNIKHEDAAQLNGNGASQANGSATVADIFNSQDVVSLSRSGIENLAKLENRKEPWLVVLYAPWCRFCQAMEESYVDLAEKLAGSGVKVAKFRADGDQKEYAKTELQLGSFPTILLFPKHSSQPIKYPSEKRDVDSLTAFVNALR*

>Glyma.09g004400.2.p sequence-type=predicted peptide transcript=Glyma.09g004400.2 locus=Glyma.09g004400 ID=Glyma.09g004400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MALAVSTTSSSSAAAAASSSFFSRLGSSSDAKAPQIGSFRFPERSLVSSVVVNVTQRRSLVRPLNAEPQRNDSIVPLAATIVAPEVEKEEEDFEQIAKDLENASPLEIMDRALEKFGNDIAIAFSGAEDVALIEYAHLTGRPYRVFSLDTGRLNPETYKFFDAVEKHYGIHIEYMFPDAVEVQALVRTKGLFSFYEDGHQECCRVRKVRPLRRALKGLKAWITGQRKDQSPGTRSEIPVVQVDPVFEGLDGGIGSLVKWNPVANVNGLDIWSFLRTMDVPVNSLHSQGYVSIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGLHKGNIKHEDAAQLNGNGASQANGSATVADIFNSQDVVSLSRSGIENLAKLENRKEPWLVVLYAPWCRFCQAMEESYVDLAEKLAGSGVKVAKFRADGDQKEYAKTELQLGSFPTILLFPKHSSQPIKYPSEKRDVDSLTAFVNALR*

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