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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G59610.1 | AT | dynamin-like 3 | JGI | N/A | IEA |
| GO:0000266 | GO-bp | mitochondrial fission | EnsemblGenomes | N/A | IEA |
| GO:0005737 | GO-cc | cytoplasm | EnsemblGenomes | N/A | IEA |
| GO:0000166 | GO-mf | nucleotide binding | EnsemblGenomes | N/A | IEA |
| GO:0003924 | GO-mf | GTPase activity | EnsemblGenomes | N/A | IEA |
| GO:0003924 | GO-mf | GTPase activity | JGI | N/A | IEA |
| GO:0005515 | GO-mf | protein binding | JGI | N/A | IEA |
| GO:0005525 | GO-mf | GTP binding | EnsemblGenomes | N/A | IEA |
| GO:0005525 | GO-mf | GTP binding | JGI | N/A | IEA |
| GO:0005543 | GO-mf | phospholipid binding | JGI | N/A | IEA |
| GO:0008017 | GO-mf | microtubule binding | EnsemblGenomes | N/A | IEA |
| KOG0446 | KOG | Vacuolar sorting protein VPS1, dynamin, and related proteins | JGI | N/A | IEA |
| PTHR11566 | Panther | DYNAMIN | JGI | N/A | IEA |
| PTHR11566:SF10 | Panther | JGI | N/A | IEA | |
| PF00169 | PFAM | PH domain | JGI | N/A | IEA |
| PF00350 | PFAM | Dynamin family | JGI | N/A | IEA |
| PF01031 | PFAM | Dynamin central region | JGI | N/A | IEA |
| PF02212 | PFAM | Dynamin GTPase effector domain | JGI | N/A | IEA |
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Glyma.09g002100 not represented in the dataset |
Glyma.09g002100 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.12g242300 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma09g00430 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.09g002100.1 sequence-type=CDS polypeptide=Glyma.09g002100.1.p locus=Glyma.09g002100 ID=Glyma.09g002100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCGGCGATCGAGGACTTGTCGGAGCTCGCCGATTCGATGCGCCAAGCCGCGGCGCTCCTCGCCGACGAAGACGTCGACGAATCCTCCACCAATTCTCGAAGACCTTCCACTTTCCTCAACGTCGTTGCACTCGGCAATGTTGGTGCTGGTAAATCCGCAGTTCTCAACAGTTTGATTGGACATCCCGTTTTGCCTACTGGTGAGAACGGAGCTACTCGAGCTCCTATATGCATTGATCTGCTGCGAGACACTTCGTTGAGCAGCAAATCCATTATCTTGCAGATTGACAACAAGTCACAGCAAGTCTCCGCAAGTGCTTTGAGACGTTCGTTGCAGGATAGACTGAGTAAGAGTTCCACCGGCAAGGGTCGGGATCAAATTTATTTGAAGCTACGCACGAGCACAGCACCGCCTCTTAAATTGGTTGATTTACCTGGGTTGGATCAGCGCATCATGGATGAATCACTGGTTAGCGAATATGCAGAGCATAATGATGCCATTTTGCTAGTTATTGTACCTGCAGTTCAAGCACCTGAAATTGCTTCATCTCGAGCCCTAAAATATGCAAAGGAATATGATGGAGAAGGTACCAGAACCATTGGCATTATTAGTAAAATAGATCAAGCTGCATCGGACCAAAAAGCGCTGGCTGCAGTACAAGCTCTCTTATTGAATCAGGGTCCTGCAAAAACATCGGATATCCCTTGGGTTGCACTGATTGGTCAATCTGTTTCAATAGCTACGGCACAGTCTGGATCTGCTGGTTCTGAAAATTCATTAGAAACTGCATGGAGAGCAGAGAGTGAAAGCCTCAAGTCCATATTGACAGGAGCTCCTCCGAGTAAGCTTGGAAGGATCGCTTTAGTGGATGCCCTGGCACACCAGATTCAGAATCGTATGAAGCTTCGGCTTCCTAACCTTCTTTCTGGGTTACAAGGGAAGTCTCAGATAGTTCAGGATGAATTGGCAAGGCTTGGTGAGTCAATGGTCACCACTTCAGAGGGTACACGTGCTATAGCCTTGGAACTTTGCCGTGAATTTGAGGATAAGTTCCTACAGCACATTACCACTGGCGAGGGATCTGGTTGGAAAATTGTTTCTTGTTTTGAGGGGAGATTTCCTGATAGAATGAAGCAATTACCTTTAGATAGGCATTTTGATATCAACAATGTGAAGAGGATTGTGTTAGAAGCAGATGGTTATCAGCCGTATCTTATTTCCCCTGAAAAGGGATTGAGATCTCTAATCAAAGGGGTTCTAGAGCTTGCGAAAGAGCCATCACGTCTTTGTGTTGATGAGGTACATCGTGTCCTGATAGATATTGTTTCGTCTGCTGCCAATGCTACACCTGGTTTGGGAAGATACCCACCTTTCAAGAGAGAGGTTGTGGCTATTGCAACTTCCGCACTAGAAGGGTTTAAGAATGAATCGAAGAAAATGGTTGTTGCACTCGTTGATATGGAGCGTGCTTTTGTCCCACCTCAACACTTCATTCGCTTGGTACAAAGAAGGATGGAAAGGCAACGTCGAGAGGAGGAGCTGAAGGGCCGATCCTCAAAAAAAGGGCAAGATGCTGAGCAATCTATACTTAACCGGGCCAGTAGTCCCCAAACTGGTGGAAGCATGAAGTCAATGAAGGAGGACAAGAAAGAGAAGGAAAAGGACAAATCTGGCCCGGCAGAGAAAGAAGGGCAAGAAAGCTCAAGTTTAAAGACTGCTGGTGCTGAAGGAGAAATAACAGCAGGATTTTTATTAAAGAAAAGTGCAAAAACTAATGGTTGGAGCAGGCGATGGTTTGTGCTAAATGAAAAGACAGGAAAGCTTGGGTACACCAAAAAACAAGAGGAAAAACATTTTCGCGGTGTTATTACATTAGAGGAATGTAACATTGAAGAGGTTGCAGATGAAGAGGATCCTCCATCCAAAAGCTCAAAGGACAAAAAGTCCAATGGACCTGATTCTGGCAAAGTCAACCTGTTATTTAAAATTACCAGTAGAGTTCCTTATAAAACTGTTTTGAAAGCACACAGTGCTGTTGTTTTGAAGGCTGAAAGTGCAGCTGATAAGGTTGAATGGATTAAAAAGATAAGCCAAGTTATACAAGCAAAGGGAGGACAGATTAGGACATCTGATGGTGGCCCTACAATGAGGCATAGCCTCTCTGATGGTTCCTTGGACACAATGGCTCGAAGACCTGCTGATCCTGAGGAAGAACTCCGATGGATGTCACAAGAAGTTCGTGGATATGTTGAAGCAGTTTTAAATAGTTTAGCTGCTAATGTACCGAAGGCAGTTGTCCTTTGTCAAGTTGAAAAGGCTAAGGAAGACATGCTGAATCAATTATATAGCTCTGTCAGTGCTCAAAGCACGGCTAAGATTGAGGAACTGCTTCTAGAAGATCAAAATGTTAAGCGCAGAAGGGATCGAATCCAGAAACAATCATCCCTTCTCTCGAAATTGACACGCCAATTGAGTATTCATGACACCCGAGCAGCAGCTGCCTCTGGCTGGTCAAATGGTAGTGCAGAGAGTAGCCCAAGAAGCAGCAGCGGACCTGGTGATGACTGGAGATCTGCCTTTGATGCAGCTGCCAATGGCCCTGTTAGTCGAAGTGGTTCATCAAGATCGGGATCCAATGGTCACAGTCGACATTCTAGTGATGCTGCCCAAAATGGTGATGTGAACTCTGGGTCAAACTCCAGCAGCCGTCGAACGCCTAATCGGTTGCCTCCTGCTCCTCCGGGTTCTTCAGGTTACAAATATTAA
>Glyma.09g002100.1.p sequence-type=predicted peptide transcript=Glyma.09g002100.1 locus=Glyma.09g002100 ID=Glyma.09g002100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MAAIEDLSELADSMRQAAALLADEDVDESSTNSRRPSTFLNVVALGNVGAGKSAVLNSLIGHPVLPTGENGATRAPICIDLLRDTSLSSKSIILQIDNKSQQVSASALRRSLQDRLSKSSTGKGRDQIYLKLRTSTAPPLKLVDLPGLDQRIMDESLVSEYAEHNDAILLVIVPAVQAPEIASSRALKYAKEYDGEGTRTIGIISKIDQAASDQKALAAVQALLLNQGPAKTSDIPWVALIGQSVSIATAQSGSAGSENSLETAWRAESESLKSILTGAPPSKLGRIALVDALAHQIQNRMKLRLPNLLSGLQGKSQIVQDELARLGESMVTTSEGTRAIALELCREFEDKFLQHITTGEGSGWKIVSCFEGRFPDRMKQLPLDRHFDINNVKRIVLEADGYQPYLISPEKGLRSLIKGVLELAKEPSRLCVDEVHRVLIDIVSSAANATPGLGRYPPFKREVVAIATSALEGFKNESKKMVVALVDMERAFVPPQHFIRLVQRRMERQRREEELKGRSSKKGQDAEQSILNRASSPQTGGSMKSMKEDKKEKEKDKSGPAEKEGQESSSLKTAGAEGEITAGFLLKKSAKTNGWSRRWFVLNEKTGKLGYTKKQEEKHFRGVITLEECNIEEVADEEDPPSKSSKDKKSNGPDSGKVNLLFKITSRVPYKTVLKAHSAVVLKAESAADKVEWIKKISQVIQAKGGQIRTSDGGPTMRHSLSDGSLDTMARRPADPEEELRWMSQEVRGYVEAVLNSLAANVPKAVVLCQVEKAKEDMLNQLYSSVSAQSTAKIEELLLEDQNVKRRRDRIQKQSSLLSKLTRQLSIHDTRAAAASGWSNGSAESSPRSSSGPGDDWRSAFDAAANGPVSRSGSSRSGSNGHSRHSSDAAQNGDVNSGSNSSSRRTPNRLPPAPPGSSGYKY*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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