SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.09G278900

Feature Type:gene_model
Chromosome:Gm09
Start:49417376
stop:49426323
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.09G278900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G35800.1AT RNA polymerase II large subunit JGI N/AIEA
GO:0006351GO-bp transcription, DNA-templated EnsemblGenomesN/AIEA
GO:0006351GO-bp transcription, DNA-templated JGI N/AIEA
GO:0006366GO-bp transcription by RNA polymerase II EnsemblGenomesN/AIEA
GO:0006366GO-bp transcription from RNA polymerase II promoter JGI N/AIEA
GO:0005665GO-cc DNA-directed RNA polymerase II, core complex EnsemblGenomesN/AIEA
GO:0005665GO-cc DNA-directed RNA polymerase II, core complex JGI N/AIEA
GO:0001055GO-mf RNA polymerase II activity EnsemblGenomesN/AIEA
GO:0003677GO-mf DNA binding EnsemblGenomesN/AIEA
GO:0003677GO-mf DNA binding JGI N/AIEA
GO:0003899GO-mf DNA-directed 5'-3' RNA polymerase activity EnsemblGenomesN/AIEA
GO:0003899GO-mf DNA-directed RNA polymerase activity JGI N/AIEA
GO:0016740GO-mf transferase activity EnsemblGenomesN/AIEA
GO:0016779GO-mf nucleotidyltransferase activity EnsemblGenomesN/AIEA
KOG0260 KOG RNA polymerase II, large subunit JGI N/AIEA
PTHR19376Panther DNA-DIRECTED RNA POLYMERASE JGI N/AIEA
PTHR19376:SF14Panther JGI N/AIEA
PF00623PFAM RNA polymerase Rpb1, domain 2 JGI N/AIEA
PF04983PFAM RNA polymerase Rpb1, domain 3 JGI N/AIEA
PF04990PFAM RNA polymerase Rpb1, domain 7 JGI N/AIEA
PF04992PFAM RNA polymerase Rpb1, domain 6 JGI N/AIEA
PF04997PFAM RNA polymerase Rpb1, domain 1 JGI N/AIEA
PF04998PFAM RNA polymerase Rpb1, domain 5 JGI N/AIEA
PF05000PFAM RNA polymerase Rpb1, domain 4 JGI N/AIEA
PF05001PFAM RNA polymerase Rpb1 C-terminal repeat JGI N/AIEA

Expression Patterns of Glyma.09G278900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.09G278900 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.09g278900 Wm82.a4.v1ISS As supplied by JGI
Glyma09g41550 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.09G278900
>Glyma.09g278900.1 sequence-type=CDS polypeptide=Glyma.09g278900.1.p locus=Glyma.09g278900 ID=Glyma.09g278900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGATGTTCGATTCCCTTTCTCCCCAGCTGAGGTCGCCAAAGTTGCCACGGTTCAGTTTGGAATTATCAGTCCCGACGAGATCAGGCAAATGTCTGTGGTGCAAATCGAGCACGGTGAGACAACCGAGAGAGGGAAGCCGAAGATCGGAGGATTGAGCGACCCTCGGCTCGGAACTATTGACAGAAAGCTCAAGTGTGACACTTGTACGGGCAGTATGGCTGAGTGCCCTGGCCATTTTGGCCACTTGGAGCTTGCCAAGCCAATGTTCCATATTGGGTTTTTGAAGACTGTATTAGCTATAATGCGTTGTGTTTGCTTCAACTGCTCCAAAATTCTAGCTAATGAGGATGATCACAAGTTCAAGCTAGCTTTAAGAATCAGGAATCCCAAAAATAGGCTGAGAAAGATTCTGGATGCCTGCAAAAACAAAAGCAAGTGCGAAGGGGGAGATGATATTGACATTCATGGTAAAGATACCGGGGAGCCGGTTAAAAAGAGTCGCGGTGGCTGCGGTGCTCAGCAGCCGAAGATTACTATTGAGGGGATGAAAATAAATGCAGAGTATAAAGCTCAGAGGAAGAAAAGTGATGACCAAGAACAGCTTCCCGAACCCGTGGAAAGGAAACAGACTCTTTCTGCAGAAAGGGTTCTTAGTGTTCTGAAAAGGATAAGCGACGAGGACTGTCAGTTGTTGGGCTTGAATCCTCAGTACGCTCGTCCTGACTGGATGATTTTACAAGTTCTTCCAATTCCTCCTCAACCTGTTAGGCCTTCTGTAATGATGGACACATCCTCCAGGAGTGAGGATGATTTAACTCACCAACTGGCCATGATCATCAGGCACAATGAGAATCTGAAGAGACAGGAGAAGAATGGATCTCCTGCACATATTATTTCCGAGTTTGTGCAGTTATTGCAGTTCCACGTAGCAACATATTTTGATAATGAGTTACCTGGATTGCCAAGGGCTACTCAGAGATCTGGAAGGCCAATCAAATCAATATGTAGCAGGCTCAAGGCAAAAGAAGGCCGGATTAGAGGTAACTTGATGGGTAAAAGAGTTGATTTTTCTGCTCGAACAGTCATTACACCTGATCCAACTATCAACATTGATCAATTGGGAGTACCATGGAGTATTGCGTTGAATCTAACATACCCTGAGACTGTGACTCCATATAACATTGAAAGGTTGAAGGAACTTGTTGAGTATGGACCCCATCCTCCACCTGGAAAAACTGGTGCCAAGTATATCATTCGTGATGACGGACAAAGACTTGATCTCAGATATTTAAAGAAAAGCAGTGATCACCATTTGGAGCTTGGCTACAAGGTCGAGCGTCATTTGAATGATGGAGACTTTGTTCTCTTCAATCGTCAGCCTAGTCTTCATAAAATGTCTATCATGGGACACAGAATCAAAATCATGCCTTATTCTACTTTCCGGCTTAACTTGTCCGTAACTTCACCATATAATGCTGATTTTGACGGGGACGAAATGAATATGCATGTTCCTCAGAGTTTAGAAACCAGAGCTGAGGTGTTAGAGCTGATGATGGTGCCTAAATGCATTGTGTCACCACAGTCAAACAAGCCAGTGATGGGAATTGTCCAAGATACACTTCTAGGATGCAGGAAAATCACCAAGAGAGACACTTTCATCACAAAGGATGTTTTTATGAACATATTGATGTGGTGGGAAGATTTTGATGGGAAAGTTCCTGCTCCTACAATATTGAAGCCAGAACCATTGTGGACAGGGAAACAAGTTTTCAATCTCATCATTCCTAAACAAATAAATCTAATTAGATTTTCGAGCTGGCATAGTGATGATGAACGGGGACCCATAACCCCTGGGGATACCATGGTTAGAATTGAAAAAGGGGAACTACTTACCGGAACACTTTGCAAAAAGACTCTTGGAGCATCCGCCGGAAGTCTCATTCATGTGATTTGGGAAGAGGTTGGCCCTGATGCAGCTCGGAAATTTCTTGGTCATACTCAGTGGCTTGTAAACTACTGGCTTTTGCAGAATGCTTTTAGCATGGGAATTGGTGATACAATAGCTGATGCTTCCACTATGGAAGCCATAAATCAGACTATTTCATTAGCTAAGGAGAAAGTGAAACAACTTATCAGGGATGCTCAAGAGAAGAAGTTGGAGGCCGAACCTGGTCGGACAATGATGGATTCATTTGAAAATAGAGTGAACCAGACTCTAAATAAAGCTCGTGATGATGCTGGAAACAGTGCTGGAAATAGTTTATCTGAGAGCAACAATCTGAAAGCAATGGTGACAGCTGGTTCGAAAGGAAGTAACATCAACATATCTCAAATGACTGCTTGTGTGGGGCAACAGAACGTTGAGGGGAAGCGAATTCCATACGGATTCGTAGACCGGACATTGCCTCACTTCACAAAAGATGATCATGGGCCTGAAAGTCGTGGCTTTGTGGAGAACTCATATCTACGTGGACTGACCCCTCAAGAGTTCTTTTTCCATGCCATGGGTGGTAGGGAAGGTCTTATTGATACTGCCGTGAAGACCTCCGAAACCGGGTACATTCAGAGGCGACTCGTGAAGGCTATGGAGGACATCATGCTTAAATATGATGGGACAGTTAGAAACTCTTTGGGAGACGTCATACAATTTCTCTACGGAGAAGATGGTATGGACGCTATTTGGATTGAAACACAGAAGCTGGATACCCTTAAAATGAAGAAAACAGAATTTGATAGGGTGTTTAGGTATGAATTTGACGAGGAAAACTGGAAGCCTAATTACATGCTTCAAGAGCCTGTAGAAGACTTGAAAACCATCAGAGAGTTTCGTAATGTGTTTGAGGCAGAAGTTCAAAAGCTTGAAGCTGATAGACATCAACTCGCAATAGAGATAGCCTCTAATGGTGACAATTCTCTGCCACTGCCTGTTAACCTCAAGAGGCTTATCTGGAATGCTCAGAAGACATTTAAGGTTGACTTCCGAAGGCCTTCTGATATGCATCCAATGGAAATTGTGGAAGCCATCGATAAGCTCCAGGAGCGGCTTAAGGTTGTTCCCGGCGAGGACGCCTTGAGTCAAGAAGCTCAAAAGAATGCTACTCTCCTCTTCAATATTCTGCTCCGCAGCACTTTCGCCAGTAAAAGGGTCTTGGAGGAATACAGGCTTTCTCGCGAGTCATTTGAGTGGGTAGTCGGAGAAATAGAATCAAGGTTCTTGCAGTCGCTTGTGGTCCCCGGAGAAATGATTGGTGTCGTGGCTGCACAATCAATTGGTGAACCTGCTACTCAGATGACTCTCAACACTTTCCACTTTGCCGGTGTCAGCGCAAAGAACGTTACTCTTGGTGTTCCTAGGTTAAGGGAACTCATTAATGTCGCCAAGAGTATTAAAACGCCTTCTCTCTCTGTGTACTTGAAACCTGATGCTGGTAAGACTAAAGAGAGAGCCAAGACTGTGCAGTGTGCTTTAGAATATACCACTCTCAGGAGTGTCACTCAAGCTACAGAGGTGTGGTATGATCCAGACCCGATGAGTACAATAATTGAAGAGGATGTGGATTTTGTCATGTCCTACTATGAAATGCCCGATGAAGAAGTTGCTCTTGAAAAAATCTCACCTTGGTTGCTTCGCGTGGAGCTGAATCGTGAAATGATGATTAACCTTGAATTTGATGATGATTTGAGTTGTATATTTAACGATGACAATGCTGAAAAACTTATACTTCGTATCCGTATAATGAATGATGATGCACCAAAGGGTGAGGTTCAGGATGAATCCGCTGAAGATGATGTTTTCTTGAAGAAAATAGAAACCAACATGCTGACTGAAATGACTCTACGAGGAATCCCAGACATAAACAAGGTTTTTATAAAAAATGCGAAAGTTCAGAAGTTTGATGAGAACGAAGGTTTTAAGTCTAATGGGGAATGGATGCTTGATACCGAAGGTGTGAACCTGCTAGCTGTGATGTGCCATGAAGATGTTGACGCGACAAGGACAACAAGCAACCACTTGATTGAGGTTATTGAAGTTCTTGGTATTGAGGCAGTTAGGCGATCTCTACTGGATGAATTGAGAATTGTAATTTCGTTTGACGGTTCTTATGTAAATTACAGGCATTTGGCTATTCTATGTGAAACAATGACGTATAGGGGGCATTTAATGGCAATAACACGTCACGGCATCAACAGGAATGATACAGGGCCAATGATGAGATGCTCATTTGAAGAGACAGTTGATATTCTGCTTGATGCTGCAGCATATGCAGAGACTGATAGCTTGAGGGGAGTCACAGAAAACATAATCTTAGGGCAGCTCGCCCCCATTGGGACAGGCCAATGTGCCTTGTATCTTAATGATGGCATGCTGAAGAATGCCATTGAGCTACAACTGCCTAGTTATACAGATGGTCTTGATTTCGGTATCATGTCTGGAGCAACTCCATATCATGAAGGCACCATGATGTCTCCCAGTTATCTGTTGAGCCCCAATTTACGCCTGTCTCCTAGTTCGGATGCACAGTTTTCGCCTTATGTTGGCGGCATGGCGTTTTCTCCTTCTTCATCTCCTGGTTATAGTCCATCATCCCCCGGCTATAGTCCATCTTCGCCCGGGTACAGCCCCACGTCGCCCGGTTACAGTCCCACTTCCCCCGGTTACAGTCCCACCTCTCCAACTTATAGCCCTAGCTCTCCCGGATATAGTCCAACAAGTCCAGCTTATTCGCCTACATCTCCCAGCTACAGCCCCACCTCACCTGCATACAGCCCAACTTCTCCTGCATACAGCTCCACTTCACCTGCATACAGTCCTACTTCTCCATCATACAGCCCCACTTCACCTGCATATAGTCCTACTTCTCCATCATATAGCCTGACATCTCCTTCCTACAGTCCAACTTCACCCTCTTACAGCCCCACGTCTCCCTCATATAGTCCTACCTCTCCTGCATACAGCCCCACATCTCCCTCATATAGCCCAACATCTCCATCTTATAGTCCTACTTCCCCCAGTTACAATCCACAATCAGCAAAATATAGTCCTTCGTTAGCTTATTCTCCAAGCAGTCCAAGATTGTCTCCCACATCTCCAAACTATAGCCCGACGTCTCCCTCGTATTCACCAACATCTCCTTCTTATTCTCCATCAAGCCCAACATACAGTCCCAGCAGTCCATATAATTCTGGTGTGAGCCCGGACTATAGCCCAACTTCCCCCCAATTTAGTCCCAGTGCGGGTTACTCACCAAGTCAACCCGGTTACTCACCGTCGTCAACCAGCCAGGACACTCCACAAACTAGTGACAAGGATGAATGA
Predicted protein sequences of Glyma.09G278900
>Glyma.09g278900.1.p sequence-type=predicted peptide transcript=Glyma.09g278900.1 locus=Glyma.09g278900 ID=Glyma.09g278900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDVRFPFSPAEVAKVATVQFGIISPDEIRQMSVVQIEHGETTERGKPKIGGLSDPRLGTIDRKLKCDTCTGSMAECPGHFGHLELAKPMFHIGFLKTVLAIMRCVCFNCSKILANEDDHKFKLALRIRNPKNRLRKILDACKNKSKCEGGDDIDIHGKDTGEPVKKSRGGCGAQQPKITIEGMKINAEYKAQRKKSDDQEQLPEPVERKQTLSAERVLSVLKRISDEDCQLLGLNPQYARPDWMILQVLPIPPQPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQEKNGSPAHIISEFVQLLQFHVATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSLETRAEVLELMMVPKCIVSPQSNKPVMGIVQDTLLGCRKITKRDTFITKDVFMNILMWWEDFDGKVPAPTILKPEPLWTGKQVFNLIIPKQINLIRFSSWHSDDERGPITPGDTMVRIEKGELLTGTLCKKTLGASAGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSMGIGDTIADASTMEAINQTISLAKEKVKQLIRDAQEKKLEAEPGRTMMDSFENRVNQTLNKARDDAGNSAGNSLSESNNLKAMVTAGSKGSNINISQMTACVGQQNVEGKRIPYGFVDRTLPHFTKDDHGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMLKYDGTVRNSLGDVIQFLYGEDGMDAIWIETQKLDTLKMKKTEFDRVFRYEFDEENWKPNYMLQEPVEDLKTIREFRNVFEAEVQKLEADRHQLAIEIASNGDNSLPLPVNLKRLIWNAQKTFKVDFRRPSDMHPMEIVEAIDKLQERLKVVPGEDALSQEAQKNATLLFNILLRSTFASKRVLEEYRLSRESFEWVVGEIESRFLQSLVVPGEMIGVVAAQSIGEPATQMTLNTFHFAGVSAKNVTLGVPRLRELINVAKSIKTPSLSVYLKPDAGKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVMSYYEMPDEEVALEKISPWLLRVELNREMMINLEFDDDLSCIFNDDNAEKLILRIRIMNDDAPKGEVQDESAEDDVFLKKIETNMLTEMTLRGIPDINKVFIKNAKVQKFDENEGFKSNGEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRSLLDELRIVISFDGSYVNYRHLAILCETMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAAYAETDSLRGVTENIILGQLAPIGTGQCALYLNDGMLKNAIELQLPSYTDGLDFGIMSGATPYHEGTMMSPSYLLSPNLRLSPSSDAQFSPYVGGMAFSPSSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPAYSPTSPAYSSTSPAYSPTSPSYSPTSPAYSPTSPSYSLTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYNSGVSPDYSPTSPQFSPSAGYSPSQPGYSPSSTSQDTPQTSDKDE*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo