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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G20930.1 | AT | 6-phosphogluconate dehydrogenase family protein | JGI | N/A | IEA |
| GO:0006098 | GO-bp | pentose-phosphate shunt | JGI | N/A | IEA |
| GO:0006574 | GO-bp | valine catabolic process | EnsemblGenomes | N/A | IEA |
| GO:0009083 | GO-bp | branched-chain amino acid catabolic process | EnsemblGenomes | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | EnsemblGenomes | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | JGI | N/A | IEA |
| GO:0004616 | GO-mf | phosphogluconate dehydrogenase (decarboxylating) activity | EnsemblGenomes | N/A | IEA |
| GO:0004616 | GO-mf | phosphogluconate dehydrogenase (decarboxylating) activity | JGI | N/A | IEA |
| GO:0008442 | GO-mf | 3-hydroxyisobutyrate dehydrogenase activity | EnsemblGenomes | N/A | IEA |
| GO:0016491 | GO-mf | oxidoreductase activity | EnsemblGenomes | N/A | IEA |
| GO:0016616 | GO-mf | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | JGI | N/A | IEA |
| GO:0048037 | GO-mf | cofactor binding | JGI | N/A | IEA |
| GO:0050661 | GO-mf | NADP binding | EnsemblGenomes | N/A | IEA |
| GO:0051287 | GO-mf | NAD binding | EnsemblGenomes | N/A | IEA |
| KOG0409 | KOG | Predicted dehydrogenase | JGI | N/A | IEA |
| PTHR22981 | Panther | 3-HYDROXYISOBUTYRATE DEHYDROGENASE-RELATED | JGI | N/A | IEA |
| PTHR22981:SF7 | Panther | 3-HYDROXYISOBUTYRATE DEHYDROGENASE, MITOCHONDRIAL | JGI | N/A | IEA |
| PF03446 | PFAM | NAD binding domain of 6-phosphogluconate dehydrogenase | JGI | N/A | IEA |
| VALDEG-PWY | SoyCyc9 | L-valine degradation I | Plant Metabolic Network | ISS | |
| GN7V-56370 | SoyCyc9-rxn | 3-hydroxyisobutyrate dehydrogenase | Plant Metabolic Network | ISS |
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Glyma.09G025100 not represented in the dataset |
Glyma.09G025100 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.15g131200 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.09g025100 | Wm82.a4.v1 | ISS | As supplied by JGI |
| Glyma09g02900 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.09g025100.2 sequence-type=transcript locus=Glyma.09g025100 ID=Glyma.09g025100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 AATAAGGTGTGAGCGTCTAAAATCATGTGATTTTCATACATTTCTTAGTAAGAAAAAAGTGTTCTTAGCACTTCTATTTATTACTTAGTACAGGATTTTAATTTTAACGTTAAAAATGAGACAAAATTTACATGTGAATCTGGACAAGTCCATGCTGACAAGAAGTTTGCCTCGTACTTCTTAAATTAACGTTTTTTTTTAAGCACGTGGTTGTTTGGTCCCATCGTGAAATTTCATGTCGTGTCTCATTTTATTGTTGTAGTGAGAAATAGGAAAGGATATTTATCTATGGCGATTTGCAAGTTGAAATCTTTGCTTTCTCTTTCGAAATGCAACTCTGCGTTGGTCTCCTCTTCAATACGCGCTTTCTCTTCGGCACAGAATGTTGGATTCATTGGGCTTGGAAATATGGGATCACGAATGGCAAATAATCTGATCAAAGCTGGATTCAGACTCACAGTTCATGACCTAAACTCTGATGTTCTCGAGATGTTCTCTCAAATGGGAGTTCCCACAAAGAAAACACCTTATGAAGTTTCAGAAGCAAGTGATGTTGTAATCACAATGTTGCCAACTTCTGCCCATGTGATTGATGTTTACACTGGACCAAATGGTTTGCTTCATGGTGGAAAACTCCTAAGGCCATGGTTGTTGTTAGATTCATCCACTATTGATCCACAAACATCAAGAAACCTTTCTGCTACAGTAACTAATTATATTCTAAGAGAAAAGAAAGGTGAATGGGAAAAACCTTTCAAGTTGGATGCTCCTGTATCTGGAAGTGTTACTGCAGCTGAAGCTGGGACACTTACTTTTATGGTTGGTGGCTCTGAGGAAGCATTTCTTGCTGCAAAGCCCTTACTCTTTTCAATGGGTAAAAGTGCAATATATTGTGGTGGAGCAGGAAGTGGTTCTGCAGCAAAAATTTGCAATAATTTGGCTTTGGCTGTGAGCATGCTGGGAATATCAGAAGCTCTTGCTCTAGGCCAATCTCTAGGTGTTTCTGCCAGCACCTTGACAAATATATTTAATTGCTCCAGTGCTCGCTGTTGGAGTAGTGATGCTTACAACCCAGTTCCTGGGCTGATGGAAGGGGTGCCCTCGTCAGGGGATTATAACGGAGGGTTTGCATCCAAGCTTATGGCAAAAGACTTGAATCTAGCAGTAGAATCAGCTAAGCTGGCTGGATGTAAATACCCACTAACATCACAAGCGCAAAAGATATATACTGAGCTCTGCAGCGTTGGCCATGAAGCCAAAGACTTTTCATGTGCTTTTCGCCATTATTACTCTGGAATTGACGAACCTCATGATCAGTAAATTAAGACGTTGGTTGTATGCATAAAACTGTTGTGATCCCATGCCTAGTATATATGGCAAGAAGATCAATTGAGCTCAATGAAGTTGTAGAAACAGTTGCGAGTTATTCTTGTTTTCAATCAGAAATAGTGTGGTTCCGCAAGACGAGCAAATATCAAAACACAAATTCTAAACGAGTAAATGCAATGTTGAAAACACAAAGACAAGCACCAACTTTCGGCCAAAATTGACAGTTTGTATACTAAGAAATTCCATAGACTCTAAGAAATTCCATTTGGAGAAAACATAAAGACAACCAAAACTTCTCTCCACAAAAACACTTAGACAAACAATCCATGATCCACCGCACAGCATTTTGCAATATTAAGCTCCAAATCTCTTCTAAGATCGTAAGTTCCTCGGTTAGTTGGTTCCTTCTGCAAAACAACCAGAAAAAGTTACTAGCAGACAAGGTTAGGGAGGGGGAGAAGGCAAATCCT
>Glyma.09g025100.1 sequence-type=CDS polypeptide=Glyma.09g025100.1.p locus=Glyma.09g025100 ID=Glyma.09g025100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCGATTTGCAAGTTGAAATCTTTGCTTTCTCTTTCGAAATGCAACTCTGCGTTGGTCTCCTCTTCAATACGCGCTTTCTCTTCGGCACAGGTTCCCCCTAATCACTTGCGGAATGTTGGATTCATTGGGCTTGGAAATATGGGATCACGAATGGCAAATAATCTGATCAAAGCTGGATTCAGACTCACAGTTCATGACCTAAACTCTGATGTTCTCGAGATGTTCTCTCAAATGGGAGTTCCCACAAAGAAAACACCTTATGAAGTTTCAGAAGCAAGTGATGTTGTAATCACAATGTTGCCAACTTCTGCCCATGTGATTGATGTTTACACTGGACCAAATGGTTTGCTTCATGGTGGAAAACTCCTAAGGCCATGGTTGTTGTTAGATTCATCCACTATTGATCCACAAACATCAAGAAACCTTTCTGCTACAGTAACTAATTATATTCTAAGAGAAAAGAAAGGTGAATGGGAAAAACCTTTCAAGTTGGATGCTCCTGTATCTGGAAGTGTTACTGCAGCTGAAGCTGGGACACTTACTTTTATGGTTGGTGGCTCTGAGGAAGCATTTCTTGCTGCAAAGCCCTTACTCTTTTCAATGGGTAAAAGTGCAATATATTGTGGTGGAGCAGGAAGTGGTTCTGCAGCAAAAATTTGCAATAATTTGGCTTTGGCTGTGAGCATGCTGGGAATATCAGAAGCTCTTGCTCTAGGCCAATCTCTAGGTGTTTCTGCCAGCACCTTGACAAATATATTTAATTGCTCCAGTGCTCGCTGTTGGAGTAGTGATGCTTACAACCCAGTTCCTGGGCTGATGGAAGGGGTGCCCTCGTCAGGGGATTATAACGGAGGGTTTGCATCCAAGCTTATGGCAAAAGACTTGAATCTAGCAGTAGAATCAGCTAAGCTGGCTGGATGTAAATACCCACTAACATCACAAGCGCAAAAGATATATACTGAGCTCTGCAGCGTTGGCCATGAAGCCAAAGACTTTTCATGTGCTTTTCGCCATTATTACTCTGGAATTGACGAACCTCATGATCAGTAA >Glyma.09g025100.2 sequence-type=CDS polypeptide=Glyma.09g025100.2.p locus=Glyma.09g025100 ID=Glyma.09g025100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCGATTTGCAAGTTGAAATCTTTGCTTTCTCTTTCGAAATGCAACTCTGCGTTGGTCTCCTCTTCAATACGCGCTTTCTCTTCGGCACAGAATGTTGGATTCATTGGGCTTGGAAATATGGGATCACGAATGGCAAATAATCTGATCAAAGCTGGATTCAGACTCACAGTTCATGACCTAAACTCTGATGTTCTCGAGATGTTCTCTCAAATGGGAGTTCCCACAAAGAAAACACCTTATGAAGTTTCAGAAGCAAGTGATGTTGTAATCACAATGTTGCCAACTTCTGCCCATGTGATTGATGTTTACACTGGACCAAATGGTTTGCTTCATGGTGGAAAACTCCTAAGGCCATGGTTGTTGTTAGATTCATCCACTATTGATCCACAAACATCAAGAAACCTTTCTGCTACAGTAACTAATTATATTCTAAGAGAAAAGAAAGGTGAATGGGAAAAACCTTTCAAGTTGGATGCTCCTGTATCTGGAAGTGTTACTGCAGCTGAAGCTGGGACACTTACTTTTATGGTTGGTGGCTCTGAGGAAGCATTTCTTGCTGCAAAGCCCTTACTCTTTTCAATGGGTAAAAGTGCAATATATTGTGGTGGAGCAGGAAGTGGTTCTGCAGCAAAAATTTGCAATAATTTGGCTTTGGCTGTGAGCATGCTGGGAATATCAGAAGCTCTTGCTCTAGGCCAATCTCTAGGTGTTTCTGCCAGCACCTTGACAAATATATTTAATTGCTCCAGTGCTCGCTGTTGGAGTAGTGATGCTTACAACCCAGTTCCTGGGCTGATGGAAGGGGTGCCCTCGTCAGGGGATTATAACGGAGGGTTTGCATCCAAGCTTATGGCAAAAGACTTGAATCTAGCAGTAGAATCAGCTAAGCTGGCTGGATGTAAATACCCACTAACATCACAAGCGCAAAAGATATATACTGAGCTCTGCAGCGTTGGCCATGAAGCCAAAGACTTTTCATGTGCTTTTCGCCATTATTACTCTGGAATTGACGAACCTCATGATCAGTAA
>Glyma.09g025100.1.p sequence-type=predicted peptide transcript=Glyma.09g025100.1 locus=Glyma.09g025100 ID=Glyma.09g025100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MAICKLKSLLSLSKCNSALVSSSIRAFSSAQVPPNHLRNVGFIGLGNMGSRMANNLIKAGFRLTVHDLNSDVLEMFSQMGVPTKKTPYEVSEASDVVITMLPTSAHVIDVYTGPNGLLHGGKLLRPWLLLDSSTIDPQTSRNLSATVTNYILREKKGEWEKPFKLDAPVSGSVTAAEAGTLTFMVGGSEEAFLAAKPLLFSMGKSAIYCGGAGSGSAAKICNNLALAVSMLGISEALALGQSLGVSASTLTNIFNCSSARCWSSDAYNPVPGLMEGVPSSGDYNGGFASKLMAKDLNLAVESAKLAGCKYPLTSQAQKIYTELCSVGHEAKDFSCAFRHYYSGIDEPHDQ* >Glyma.09g025100.2.p sequence-type=predicted peptide transcript=Glyma.09g025100.2 locus=Glyma.09g025100 ID=Glyma.09g025100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 MAICKLKSLLSLSKCNSALVSSSIRAFSSAQNVGFIGLGNMGSRMANNLIKAGFRLTVHDLNSDVLEMFSQMGVPTKKTPYEVSEASDVVITMLPTSAHVIDVYTGPNGLLHGGKLLRPWLLLDSSTIDPQTSRNLSATVTNYILREKKGEWEKPFKLDAPVSGSVTAAEAGTLTFMVGGSEEAFLAAKPLLFSMGKSAIYCGGAGSGSAAKICNNLALAVSMLGISEALALGQSLGVSASTLTNIFNCSSARCWSSDAYNPVPGLMEGVPSSGDYNGGFASKLMAKDLNLAVESAKLAGCKYPLTSQAQKIYTELCSVGHEAKDFSCAFRHYYSGIDEPHDQ*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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