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Report for Sequence Feature Glyma.08g363700

Feature Type:gene_model
Chromosome:Gm08
Start:47520208
stop:47526611
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.08g363700
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G29880.1AT glycyl-tRNA synthetase / glycine--tRNA ligase JGI N/AIEA
GO:0006418GO-bp tRNA aminoacylation for protein translation EnsemblGenomesN/AIEA
GO:0006418GO-bp tRNA aminoacylation for protein translation JGI N/AIEA
GO:0006426GO-bp glycyl-tRNA aminoacylation EnsemblGenomesN/AIEA
GO:0070150GO-bp mitochondrial glycyl-tRNA aminoacylation EnsemblGenomesN/AIEA
GO:0005737GO-cc cytoplasm EnsemblGenomesN/AIEA
GO:0005739GO-cc mitochondrion EnsemblGenomesN/AIEA
GO:0000166GO-mf nucleotide binding EnsemblGenomesN/AIEA
GO:0000166GO-mf nucleotide binding JGI N/AIEA
GO:0004812GO-mf aminoacyl-tRNA ligase activity EnsemblGenomesN/AIEA
GO:0004812GO-mf aminoacyl-tRNA ligase activity JGI N/AIEA
GO:0004820GO-mf glycine-tRNA ligase activity EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding JGI N/AIEA
KOG2298 KOG Glycyl-tRNA synthetase and related class II tRNA synthetase JGI N/AIEA
PTHR10745Panther GLYCYL-TRNA SYNTHETASE/DNA POLYMERASE SUBUNIT GAMMA-2 JGI N/AIEA
PF00458PFAM WHEP-TRS domain JGI N/AIEA
PF00587PFAM tRNA synthetase class II core domain (G, H, P, S and T) JGI N/AIEA
PF03129PFAM Anticodon binding domain JGI N/AIEA

Expression Patterns of Glyma.08g363700
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.08g363700 not represented in the dataset
Glyma.08g363700 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.08g363700
ParalogEvidenceComments
Glyma.18g298400 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.08g363700 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma08g47890 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.08g363700
>Glyma.08g363700.1 sequence-type=CDS polypeptide=Glyma.08g363700.1.p locus=Glyma.08g363700 ID=Glyma.08g363700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCTGAAGCATTTAGTGAGAGTGAGAGCGATAGCAAAAACAGCAATATCTTCTTCCTTCCCTAAGCCTAAAAATAAAATATCTTGTCATTCAATTCCACTCACATTCGCCATATCGTCTTCTCCCATGGCCGCCACCGATGAATCCCTCCGCAAATCCCTCGCCGAGAAGCACGCCGCAGTGGAAGCCCAAGGCAACGCCGTCCGCGCCCTCAAGGCCGCCAAAGCCGCCAAACCCGAAATCGACGCCGCAATCGAAGCCCTAAACGCGCTGAAGCTCGAAAAAAGCTCCATCGAGCACTCCCTCCTCGGCGGCTCCGACAGCCGCGAGGCCTTCCGTCAGTCCGTGGTGAACACCCTTGAACGGCGCCTCTTCTACATCCCCTCCTTCAAGATCTACCGCGGCGTCGCCGGCCTCTTCGACTACGGCCCTCCCGGCTGCTCCGTCAAGTCCAACGTGCTCTCGTTCTGGCGCCAACACTTCGTCCTGGAAGAGAACATGCTCGAAGTCGATTGCCCCTGCGTCACTCCCGAAATCGTTCTCAAGGCCTCTGGGCACGTGGACAAATTCACCGATCTCATGGTCAAAGACGAGAAGACCGGCACGTGCTACCGCGCCGATCACCTGCTCAAGGACTTCTGCAACGACAAGCTCCAGCGTGACCTTGCGTTGTCTTCTGATAAGGTTGCGGAGCTTAAGCACGTGCTTGCCATGCTGGATGATTTCTCTGCTGAAGAGCTTGGTGCCAAGATTAAGGACTATGGGATTGTTTCTCCTGAGACTAAGAACTCTCTCTCTGATCCCTACCCTTTCAATTTGATGTTTCAGACTTCCATTGGTCCCTCCGGCTTCAGCCCTGGCTTTATGAGACCCGAGACTGCCCAGGGCATTTTCGTCAATTTTAAGGATTTGTATTATTACAATGGCAACAAGCTTCCTTTCGCTGCTGCGCAGATTGGCCAAGCGTTTAGGAATGAGATATCTCCACGACAGGGGCTTCTGAGAGTGCGGGAGTTCACGTTGGCGGAGATTGAGCACTTTGTTGACCCTCTAGATAAGTCTCATCCCAAGTACCCTGAGGTAGCTGACTTGGAGTTCTTGATGTTCCCGAGGGAGGAGCAAATGTCGGGTCAGTCTGCCAAGAGGATTCCTCTTCGTGATGCTGTTTCCAAGGGAATTGTCAACAATGAGACACTTGGTTACTTCATCGGGAGAGTGTATCTATTCTTGACGCGTCTTGGTATAGACAAGGACCGATTGAGGTTTAGGCAACATCTCGCCAATGAGATGGCCCACTATGCTGCTGACTGTTGGGATGCCGAGATTGAGTGCTCCTATGGTTGGATTGAGTGTGTTGGCATTGCCGATAGATCTGCATATGATTTGCGTGCTCACTCGGATAAAAGTGGTGTTCCGTTAGTGGCTCATGAAAAATTTGCAGAACCTAAGGAAGTGGAGAAATTGGTTATAACTCCAGTAAAGAAAGAGCTGGGTCTGGCATTCAAGGGGAACCAGAGGATGGTGGTTGAAGCACTTGAGGCAATGGCTGAGAAAGAAGCTTTGGATATGAAGGCTGCTCTGGAGTCAAAAGGGGAGGTGGAGTTTCAAGTGTGTACACTTGGGAAAAATGTGACTATTAAGAAGAGTATGCTGACCATTCAAAAGGAGATAAAGAAAGAGCACCAGCGAGTTTTTACACCATCTGTGATTGAACCATCATTTGGAATTGGACGTATAATCTATTGCCTCTTTGAGCACACATTCTACACGAGGCCAAGCAAAGCTGGGGATGAACAGTTAAATGTATTTCGTTTCCCTTCACTTGTAGCCCCTATTAAGTGTACAGTTTTCCCACTGGTTCAGAATCAGAAGTATGAGGAGGTTGCCAAACTCATTTCCAAGTCATTGACTGCTGTTGGAATTTCACACAAGATTGACACTACAGGTACATCAATAGGAAAACGATATGCAAGAACAGATGAACTTGGCGTGCCCTTTGCTATCACTGTAGATTCAACATCATCAGTGACTATTCGGGAGAGGGACAGCAAGGATCAAGTGCGTGTTGATGTGGATAAAGCTGCCTCTGTTGTTAGGGAGGTGACTGAAGGCCAGAGGACATGGGAAGATGTGTGGTCAACTTTTCCTCATCATTCCTCTACATCTGCAGATGAATGA
Predicted protein sequences of Glyma.08g363700
>Glyma.08g363700.1.p sequence-type=predicted peptide transcript=Glyma.08g363700.1 locus=Glyma.08g363700 ID=Glyma.08g363700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLKHLVRVRAIAKTAISSSFPKPKNKISCHSIPLTFAISSSPMAATDESLRKSLAEKHAAVEAQGNAVRALKAAKAAKPEIDAAIEALNALKLEKSSIEHSLLGGSDSREAFRQSVVNTLERRLFYIPSFKIYRGVAGLFDYGPPGCSVKSNVLSFWRQHFVLEENMLEVDCPCVTPEIVLKASGHVDKFTDLMVKDEKTGTCYRADHLLKDFCNDKLQRDLALSSDKVAELKHVLAMLDDFSAEELGAKIKDYGIVSPETKNSLSDPYPFNLMFQTSIGPSGFSPGFMRPETAQGIFVNFKDLYYYNGNKLPFAAAQIGQAFRNEISPRQGLLRVREFTLAEIEHFVDPLDKSHPKYPEVADLEFLMFPREEQMSGQSAKRIPLRDAVSKGIVNNETLGYFIGRVYLFLTRLGIDKDRLRFRQHLANEMAHYAADCWDAEIECSYGWIECVGIADRSAYDLRAHSDKSGVPLVAHEKFAEPKEVEKLVITPVKKELGLAFKGNQRMVVEALEAMAEKEALDMKAALESKGEVEFQVCTLGKNVTIKKSMLTIQKEIKKEHQRVFTPSVIEPSFGIGRIIYCLFEHTFYTRPSKAGDEQLNVFRFPSLVAPIKCTVFPLVQNQKYEEVAKLISKSLTAVGISHKIDTTGTSIGKRYARTDELGVPFAITVDSTSSVTIRERDSKDQVRVDVDKAASVVREVTEGQRTWEDVWSTFPHHSSTSADE*






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