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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G59760.1 | AT | RNA helicase, ATP-dependent, SK12/DOB1 protein | JGI | N/A | IEA |
| GO:0000460 | GO-bp | maturation of 5.8S rRNA | EnsemblGenomes | N/A | IEA |
| GO:0006355 | GO-bp | regulation of transcription, DNA-templated | EnsemblGenomes | N/A | IEA |
| GO:0006364 | GO-bp | rRNA processing | EnsemblGenomes | N/A | IEA |
| GO:0006401 | GO-bp | RNA catabolic process | EnsemblGenomes | N/A | IEA |
| GO:0031125 | GO-bp | rRNA 3'-end processing | EnsemblGenomes | N/A | IEA |
| GO:0005634 | GO-cc | nucleus | EnsemblGenomes | N/A | IEA |
| GO:0005654 | GO-cc | nucleoplasm | EnsemblGenomes | N/A | IEA |
| GO:0003676 | GO-mf | nucleic acid binding | EnsemblGenomes | N/A | IEA |
| GO:0003676 | GO-mf | nucleic acid binding | JGI | N/A | IEA |
| GO:0003723 | GO-mf | RNA binding | EnsemblGenomes | N/A | IEA |
| GO:0003724 | GO-mf | RNA helicase activity | EnsemblGenomes | N/A | IEA |
| GO:0004004 | GO-mf | ATP-dependent RNA helicase activity | EnsemblGenomes | N/A | IEA |
| GO:0004386 | GO-mf | helicase activity | JGI | N/A | IEA |
| GO:0005524 | GO-mf | ATP binding | EnsemblGenomes | N/A | IEA |
| GO:0005524 | GO-mf | ATP binding | JGI | N/A | IEA |
| GO:0008026 | GO-mf | ATP-dependent helicase activity | JGI | N/A | IEA |
| GO:0016818 | GO-mf | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | JGI | N/A | IEA |
| KOG0948 | KOG | Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily | JGI | N/A | IEA |
| PTHR11752 | Panther | HELICASE SKI2W | JGI | N/A | IEA |
| PTHR11752:SF2 | Panther | DEAD-BOX ATP-DEPENDENT RNA HELICASE ISE2, CHLOROPLASTIC | JGI | N/A | IEA |
| PF00270 | PFAM | DEAD/DEAH box helicase | JGI | N/A | IEA |
| PF00271 | PFAM | Helicase conserved C-terminal domain | JGI | N/A | IEA |
| PF08148 | PFAM | DSHCT (NUC185) domain | JGI | N/A | IEA |
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Glyma.08g361900 not represented in the dataset |
Glyma.08g361900 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma08g47700 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.08g361900.1 sequence-type=CDS polypeptide=Glyma.08g361900.1.p locus=Glyma.08g361900 ID=Glyma.08g361900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGGGTCACTAAAGAGAAAGTCCCCAGAGGAGCCTTCAAGTTCAACTTTGCAACCACTCCATGATTGTGTGCACCATGTCTCATATCCAGATGGTTACAACAACGTCCACGCTTCTTCTTCTTCTCCAACTCACACTACTACTTCAGAACCCGCCAAGAACTTCCCCTTCCCTCTCGACCCTTTTCAGTCCAAATCCATTTCTTGCCTCGAAAACGGCGAGTCCGTCATGGTCTCTGCACACACCTCTGCTGGGAAAACCGTGGTGGCATTGTATGCTATTGCCATGTCCCTCCGTAATGGCCAGCGCGTGGTCTACACTTCCCCTATCAAGGCTCTCAGCAACCAGAAGTACAGAGAATTCAAGGAAGAATTCTCCGACGTTGGTTTGATGACCGGAGACGTCACAATTGATCCCAATGCTTCTTGCTTGGTCATGACTACCGAAATCTGGCGTAGCATGCAATACAAAGGCTCTGAGCTCACTAGGGAGGTAGCTTGGATTGTTTTTGATGAGGTCCATTACATGCGTGATCGTGAGAGGGGTGTGGTTTGGGAAGAGAGCATTGTTTTGTCCCCCAAGAATTCACGTTTCGTCTTCCTCTCTGCCACTGTCCCCAATGCCAAAGAGTTTGCTGATTGGGTGGCGAAGGTGCACCAACAGCCTTGTCATGTCGTTTATACAGATTACCGACCAACTCCCCTCCAGCATTATCTTTTCCCTTCTGGAGGTGATGGTCTGTATTTGGTTGTCGACGAAAAGGGAAAGTTTCGTGAAGACAGTTTTCAGAAATCTTTGAATGCTCTCATTCCTGCCACTGAGGGTGACAAGAAGAAAGAAAATGGCAAGTGGCAAAAAGGTTTGGTGCTTGGTAGAAGTGGTGAAGAAAGTGACATATTCAAGATGGTGAAAATGATCATTCAGCGTCAATATGACCCTGTCATACTCTTCAGCTTTAGCAAAAGGGAGTGTGAGTTTCTTGCAATGCAGATGGCAAAAATGGATCTTAATGGGGATAATGAGAAGGATAATATTGAACAAATATTTTGTAGTGCTATGGACATGCTTTCAGATGATGATAAGAAACTTCCCCAGGTTTCAAACATGCTGCCCTTGCTGAAACGTGGAATAGGAGTACATCACTCTGGTTTACTCCCAATTCTAAAGGAAGTGATTGAGATCTTATTTCAAGAGGGACTAATCAAGTGTTTGTTTGCCACCGAGACATTTAGCATTGGTTTGAACATGCCTGCAAAAACTGTTGTTTTCACAAATGTCCGGAAGTTTGACGGGGACAAGTTTAGGTGGATATCCAGTGGAGAATATATTCAAATGAGTGGTCGTGCTGGTCGACGAGGCATTGATGAACGTGGAATATGTATCCTCATGGTTGATGAGAAGATGGAGCCTTCTACTGCTAAAAATATGGTTAAAGGGGCAGCTGATAGTCTAAACAGTGCCTTTCATTTAAGCTACAACATGATTTTGAACCAAATGCGGTGTGAAGATGGTGATCCTGAAAATTTGCTACGTAATTCCTTTTTTCAGTTCCAAGCAGATCGTGCCATTCCTGATCTTGAGAAACAAATAAAGAGTCTTGAAGAAGAGAGGGAATCAATTGTTATTGAAGAAGAAAGCAGTCTGAAGGATTATTTCAATCTGCTTGAGCAGCATAGAGCTTTGAATAAGGAGATTCGTGACATTGTGCTGTCTCCAAGGCATTGTTTACCTTTTTTACAGCCTGGTAGGCTTGTCTCTCTCGAATGCACATCAAGTGATGAAGATCTACCCCTCATTTTTATTGAGGATCAGTTGACTTGGGGGTTGGTCATTAATTTTGAAAGGGTCAAGAGTGTATCTGAAGATGATGCAAGCATAAAACCTGAAGATGCATCTTACATTGTTGATGTTCTTACGAGATGTGTTGTGAGGAAAGATAAAATTGGAAAAAAATCTATCAAGATTGTTCCTCTGAAAGAAGTTGGAGAACCTCTAGTGGTTTCGGTTCCTATCTCTCAGATCAATACAATAAGTAGTTTGCGTCTATATATACCGAAGGATCTTTTGCCATTGGAAGCTCGAGAAAACACACTGAAAAAAGTGTTGGAAACTCTTACTAGATTTGGTGAGAAAGGATTGCCACTTCTAGATCCTGAAGAAGACATGAAGATTCAAAGCAGTTCATATAAAAAAGCATCTCGTAGAATAGAGGCTTTGGAGAGCCTATTTGAAAAGCATGAAATTGCAAAGTCACCACTTATAAAACAGAAATTGAAAGTTTTTCAGAGGAAGCAAGAACTGACTGCAAAGATAAAGTCCATTAAGAAAGCATTAAGATCTTCTTCTGCTTTAGCCTTCAAGGATGAACTTAAGGCAAGAAAGAGAGTTCTTCGTAGGCTCGGATACGCTACAAGTGACAATGTAGTGGAATTAAAAGGGAGGGTTGCTTGTGAAATTAGTAGTGCAGATGAACTGACCCTAACAGAGCTCATGTTCAATGGTGTTTTAAAGGACATAAAGGTGGAGGAAATGGTTTCTCTCCTTTCTTGTTTTGTCTGGCAAGAAAAAATTCATGATGCTGCCAAACCTCGGGAAGAACTTGATTTTCTTTTTATGCAATTACAAGACACGGCTCGGAGAGTTGCCCAACTTCAGCTGGAGTGCAAGGTGGAAATTGACGTTGAGAGTTTTGTTAAGTCGTTTAGGCCTGACATTATGGAGGCTGTGTATGCTTGGGCGAAAGGTTCAAAGTTCTATGAGATCATGGAAATCACTCAAGTCTTTGAAGGTAGCTTGATTAGAGCAATTAGACGACTTGAGGAAGTTCTTCAGCAGTTAATAGAAGCAGCTAAGTCAATTGGGGAAACTCAACTTGAGGCAAAGTTTGAAGAAGCTGTGTCCAAGATCAAGAGGGACATTGTCTTTGCTGCATCCCTGTATTTGTAG
>Glyma.08g361900.1.p sequence-type=predicted peptide transcript=Glyma.08g361900.1 locus=Glyma.08g361900 ID=Glyma.08g361900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MGSLKRKSPEEPSSSTLQPLHDCVHHVSYPDGYNNVHASSSSPTHTTTSEPAKNFPFPLDPFQSKSISCLENGESVMVSAHTSAGKTVVALYAIAMSLRNGQRVVYTSPIKALSNQKYREFKEEFSDVGLMTGDVTIDPNASCLVMTTEIWRSMQYKGSELTREVAWIVFDEVHYMRDRERGVVWEESIVLSPKNSRFVFLSATVPNAKEFADWVAKVHQQPCHVVYTDYRPTPLQHYLFPSGGDGLYLVVDEKGKFREDSFQKSLNALIPATEGDKKKENGKWQKGLVLGRSGEESDIFKMVKMIIQRQYDPVILFSFSKRECEFLAMQMAKMDLNGDNEKDNIEQIFCSAMDMLSDDDKKLPQVSNMLPLLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDERGICILMVDEKMEPSTAKNMVKGAADSLNSAFHLSYNMILNQMRCEDGDPENLLRNSFFQFQADRAIPDLEKQIKSLEEERESIVIEEESSLKDYFNLLEQHRALNKEIRDIVLSPRHCLPFLQPGRLVSLECTSSDEDLPLIFIEDQLTWGLVINFERVKSVSEDDASIKPEDASYIVDVLTRCVVRKDKIGKKSIKIVPLKEVGEPLVVSVPISQINTISSLRLYIPKDLLPLEARENTLKKVLETLTRFGEKGLPLLDPEEDMKIQSSSYKKASRRIEALESLFEKHEIAKSPLIKQKLKVFQRKQELTAKIKSIKKALRSSSALAFKDELKARKRVLRRLGYATSDNVVELKGRVACEISSADELTLTELMFNGVLKDIKVEEMVSLLSCFVWQEKIHDAAKPREELDFLFMQLQDTARRVAQLQLECKVEIDVESFVKSFRPDIMEAVYAWAKGSKFYEIMEITQVFEGSLIRAIRRLEEVLQQLIEAAKSIGETQLEAKFEEAVSKIKRDIVFAASLYL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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