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Report for Sequence Feature Glyma.08g350600

Feature Type:gene_model
Chromosome:Gm08
Start:46435614
stop:46439066
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.08g350600
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G55160.1AT small ubiquitin-like modifier 2 JGI N/AIEA
AT5G55160.2AT small ubiquitin-like modifier 2 JGI N/AIEA
GO:0016925GO-bp protein sumoylation EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding JGI N/AIEA
GO:0031386GO-mf protein tag EnsemblGenomesN/AIEA
KOG1769 KOG Ubiquitin-like proteins JGI N/AIEA
PTHR10562Panther SMALL UBIQUITIN-RELATED MODIFIER JGI N/AIEA
PF11976PFAM Ubiquitin-2 like Rad60 SUMO-like JGI N/AIEA

Expression Patterns of Glyma.08g350600
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.08g350600
ParalogEvidenceComments
Glyma.18g165200 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.08g350600 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma08g46500 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.08g350600
>Glyma.08g350600.2 sequence-type=transcript locus=Glyma.08g350600 ID=Glyma.08g350600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AGGCAATAGAAAAGAAAACCAAGTCAAGTTCTCACTTTGAAGAGAAAATAACAACGTAAAGATGTCTGCATCAGgaggcagaggaagccaagaggaagagaagaAGCCTTCTGATCAAGGAGCACATATTAATCTCAAAGTCAAGGGCCAGGATGGTAATGAGGTTTTCTTTAGGATTAAAAGAAGCACTCAGCTCAAGAAACTTATGAATGCATACTGTGATCGTCAATCTGTAGATTTTAACTCAATTGCTTTCTTGTTTGATGGAAGGAGACTCCGAGCTGAACAGACCCCTGATGAGCTAGAGATGGAGGATGGTGATGAGATAGATGCAATGCTGCACCAAACCGGAGGTGGACACAAGTTTCTTTAAATGTATGATGATCATCTTCATCAAAATGCTTGATAAAACGCATGGTATTCGGTGCTTGTTTCAAGGTTTCTATTTTTGTATCATATCTTACGATACTAATGTAGTAAAGTTGACAGTTTCCGATATGGATTTTTCATGTTTATTGAAGTCTTGATGCTTAAAAGCTGCTATTACTGTGTTGGATACAATACTATGGTCTTCACTATTCATTCTTGGCTTGATGATGAATTTGTATTGTGTGTTTGGAATTTAGCTACATCAATATTTTGGTAAATATTGTCTTGTCCACTGTCATTCCGACTTACATGTCTTGTTACTTTCTGTGAATTTGTGGTATTGCAATCATGT
Coding sequences of Glyma.08g350600
>Glyma.08g350600.1 sequence-type=CDS polypeptide=Glyma.08g350600.1.p locus=Glyma.08g350600 ID=Glyma.08g350600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCTGCATCAGGAGGCAGAGGAAGCCAAGAGGAAGAGAAGAAGCCTTCTGATCAAGGAGCACATATTAATCTCAAAGTCAAGGGCCAGGTCTCAATTCTATATTCACCTTTCCCTTTGTTAAATTTCATGGATGGTAATGAGGTTTTCTTTAGGATTAAAAGAAGCACTCAGCTCAAGAAACTTATGAATGCATACTGTGATCGTCAATCTGTAGATTTTAACTCAATTGCTTTCTTGTTTGATGGAAGGAGACTCCGAGCTGAACAGACCCCTGATGAGCTAGAGATGGAGGATGGTGATGAGATAGATGCAATGCTGCACCAAACCGGAGGTGGACACAAGTTTCTTTAA

>Glyma.08g350600.2 sequence-type=CDS polypeptide=Glyma.08g350600.2.p locus=Glyma.08g350600 ID=Glyma.08g350600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCTGCATCAGGAGGCAGAGGAAGCCAAGAGGAAGAGAAGAAGCCTTCTGATCAAGGAGCACATATTAATCTCAAAGTCAAGGGCCAGGATGGTAATGAGGTTTTCTTTAGGATTAAAAGAAGCACTCAGCTCAAGAAACTTATGAATGCATACTGTGATCGTCAATCTGTAGATTTTAACTCAATTGCTTTCTTGTTTGATGGAAGGAGACTCCGAGCTGAACAGACCCCTGATGAGCTAGAGATGGAGGATGGTGATGAGATAGATGCAATGCTGCACCAAACCGGAGGTGGACACAAGTTTCTTTAA
Predicted protein sequences of Glyma.08g350600
>Glyma.08g350600.1.p sequence-type=predicted peptide transcript=Glyma.08g350600.1 locus=Glyma.08g350600 ID=Glyma.08g350600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSASGGRGSQEEEKKPSDQGAHINLKVKGQVSILYSPFPLLNFMDGNEVFFRIKRSTQLKKLMNAYCDRQSVDFNSIAFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGGHKFL*

>Glyma.08g350600.2.p sequence-type=predicted peptide transcript=Glyma.08g350600.2 locus=Glyma.08g350600 ID=Glyma.08g350600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSASGGRGSQEEEKKPSDQGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDFNSIAFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGGHKFL*






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