Glyma.08g349500

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Report for Sequence Feature Glyma.08g349500

Feature Type:	gene_model
Chromosome:	Gm08
Start:	46369527
stop:	46374873
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.08g349500

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G25070.1	AT	RPM1 interacting protein 4	JGI	N/A	IEA
PF05627	PFAM	Cleavage site for pathogenic type III effector avirulence factor Avr	JGI	N/A	IEA

Proteins Associated with Glyma.08g349500

Locus	Gene Symbol	Protein Name
	RIN4d	RIN4d protein

Expression Patterns of Glyma.08g349500

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.08g349500

Paralog	Evidence	Comments
Glyma.18g166800	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.08g349500 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma08g46400	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.08g349500

Limit To All Plant Sequences

>Glyma.08g349500.2 sequence-type=transcript locus=Glyma.08g349500 ID=Glyma.08g349500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AGTGACGTAACAATGTGAAGGCCGCGACTCTAGAAGGAGAAGAAGGACTTTGAAGCAGAAGAAACATAGAATTTACAGAGAGAAAGAAAATGTTCAAACATTACCGGTGGCCCCGGTTAGTGGTTCATAAACCTTTCTCTAAGCTTCCGACTCTCTCTCTCTTACGGGGTCTTTGCAGTCCGTGGAAGAGCTTGTTGGGTTATCTCAGCTTTCACCTTTCCAGGCTCTGATTCAAAGAAAAATCTCAACTTCCTTCAACAATTCATCTCTACAATTTCTGGATAGTGTCTTTTTTTTAGCAAGAATGGCTCAACATTCTAATGTTCCAAAGTTTGGCAATCAGGAGAGTGAAGACAACGTTTTAGACACAGCTCATTCTGACAAAGCCCAGAAAGGTCAGTCTGGTTCAAAGATGATTAATCCAAATGACACCAAGGAAAATTCGGACATAGTTTCTTCTGCTGACCTACCCCATTCAAAACCCAGAGTTCATTCAGAGGATCCATCTGGAAAGGGATCAGTGAGAACAACACATGAGTTACAAAAGAGTAGGGAGGATGGTGATCCTAAACAATTTACTGACTCTCCAGCTCGCCATGGTGGCGGTGATTCTTCCCATCGAGGTCATGGAGTAGGTTCTGCTGACAACCGTAAAAGACCTTCAAGACAAAGTACTGGGCCTGAGCACAACATTGACCGTTCACCCCTTCATCGCCAGGCAAAAACCCCTGGCAGAGATAGTCCTTCTTGGGAAGGAAAAAATTCATATGATAGCAGCCATGGTACCCCAGGAAGGTCCCGATTGAGACCATCTTACCGAGGGGATGAAACTCCTGATGAAGGTGCTGCTGTTCCAAAGTTTGGTGAGTGGGATGAGAGCAACCCTGCATCAGCTGATGGCTACACTCACATTTTCAACAAAGTGCGGGAAGAGAAACAAGTGGGGGCTGGACACGTGCCAGGCACACCTAATGGGAGACAATATGCTGCTCGGAATCAACGTGCCAACGACAAAGCTCAGAGTTGCTGCTTTTGCTGGGGCAAAAAATGATTTATGTGAAGCATGAATTATAATCTGAACTGAAGAGATAAAAATAGTGTTGTGAATGGCCATGAGGTGTGTGTAGCACTTGTAAATATTCAAGGCTCTGTCTTCCTAGAAAAAAATCATTGAAGAACAATTGTCTTAATTTTTTGCCTTTTTCTTCCTCTGTCTTTTGGTCAATAGAGACACTTTGTGTGGAAGATTGTGATTTGTCCTGTTTATCTATTTTTTATTTTGTTATGTAATTGCCACGCTTTATAACTCGATTTGTCTGTATTTAGCTGGGAAATACAAGATTTATTATACAATTCTTTTGGTTGTGATTCTAGTCTTATTGTGTTGATCTCGTGTAGCTTAACTCAAATTGATCCTATTCAATAACAAACTGTTTCAAGAAATAAATTTTTCCTTGGTCTATGTGTAGG

>Glyma.08g349500.3 sequence-type=transcript locus=Glyma.08g349500 ID=Glyma.08g349500.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
AGTGACGTAACAATGTGAAGGCCGCGACTCTAGAAGGAGAAGAAGGACTTTGAAGCAGAAGAAACATAGAATTTACAGAGAGAAAGAAAATGTTCAAACATTACCGGTGGCCCCGGTTAGTGGTTCATAAACCTTTCTCTAAGCTTCCGACTCTCTCTCTCTTACGGGGTCTTTGCAGTCCGTGGAAGAGCTTGTTGGGTTATCTCAGCTTTCACCTTTCCAGGCTCTGATTCAAAGAAAAATCTCAACTTCCTTCAACAATTCATCTCTACAATTTCTGGATAGTGTCTTTTTTTTAGCAAGAATGGCTGAGAGTGAAGACAACGTTTTAGACACAGCTCATTCTGACAAAGCCCAGAAAGGTCAGTCTGGTTCAAAGATGATTAATCCAAATGACACCAAGGAAAATTCGGACATAGTTTCTTCTGCTGACCTACCCCATTCAAAACCCAGAGTTCATTCAGAGGATCCATCTGGAAAGGGATCAGTGAGAACAACACATGAGTTACAAAAGAGTAGGGAGGATGGTGATCCTAAACAATTTACTGACTCTCCAGCTCGCCATGGTGGCGGTGATTCTTCCCATCGAGGTCATGGAGTAGGTTCTGCTGACAACCGTAAAAGACCTTCAAGACAAAGTACTGGGCCTGAGCACAACATTGACCGTTCACCCCTTCATCGCCAGGCAAAAACCCCTGGCAGAGATAGTCCTTCTTGGGAAGGAAAAAATTCATATGATAGCAGCCATGGTACCCCAGGAAGGTCCCGATTGAGACCATCTTACCGAGGGGATGAAACTCCTGATGAAGGTGCTGCTGTTCCAAAGTTTGGTGAGTGGGATGAGAGCAACCCTGCATCAGCTGATGGCTACACTCACATTTTCAACAAAGTGCGGGAAGAGAAACAAGTGGGGGCTGGACACGTGCCAGGCACACCTAATGGGAGACAATATGCTGCTCGGAATCAACGTGCCAACGACAAAGCTCAGAGTTGCTGCTTTTGCTGGGGCAAAAAATGATTTATGTGAAGCATGAATTATAATCTGAACTGAAGAGATAAAAATAGTGTTGTGAATGGCCATGAGGTGTGTGTAGCACTTGTAAATATTCAAGGCTCTGTCTTCCTAGAAAAAAATCATTGAAGAACAATTGTCTTAATTTTTTGCCTTTTTCTTCCTCTGTCTTTTGGTCAATAGAGACACTTTGTGTGGAAGATTGTGATTTGTCCTGTTTATCTATTTTTTATTTTGTTATGTAATTGCCACGCTTTATAACTCGATTTGTCTGTATTTAGCTGGGAAATACAAGATTTATTATACAATTCTTTTGGTTGTGATTCTAGTCTTATTGTGTTGATCTCGTGTAGCTTAACTCAAATTGATCCTATTCAATAACAAACTGTTTCAAGAAATAAATTTTTCCTTGGTCTATGTGTAGG

Coding sequences of Glyma.08g349500

Limit To All Plant Sequences

>Glyma.08g349500.1 sequence-type=CDS polypeptide=Glyma.08g349500.1.p locus=Glyma.08g349500 ID=Glyma.08g349500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCTTTTGTTTCCTTTCTCTGTTTTTTCTCTGTTGATAACTCTGAACAACATTCTAATGTTCCAAAGTTTGGCAATCAGGAGAGTGAAGACAACGTTTTAGACACAGCTCATTCTGACAAAGCCCAGAAAGGTCAGTCTGGTTCAAAGATGATTAATCCAAATGACACCAAGGAAAATTCGGACATAGTTTCTTCTGCTGACCTACCCCATTCAAAACCCAGAGTTCATTCAGAGGATCCATCTGGAAAGGGATCAGTGAGAACAACACATGAGTTACAAAAGAGTAGGGAGGATGGTGATCCTAAACAATTTACTGACTCTCCAGCTCGCCATGGTGGCGGTGATTCTTCCCATCGAGGTCATGGAGTAGGTTCTGCTGACAACCGTAAAAGACCTTCAAGACAAAGTACTGGGCCTGAGCACAACATTGACCGTTCACCCCTTCATCGCCAGGCAAAAACCCCTGGCAGAGATAGTCCTTCTTGGGAAGGAAAAAATTCATATGATAGCAGCCATGGTACCCCAGGAAGGTCCCGATTGAGACCATCTTACCGAGGGGATGAAACTCCTGATGAAGGTGCTGCTGTTCCAAAGTTTGGTGAGTGGGATGAGAGCAACCCTGCATCAGCTGATGGCTACACTCACATTTTCAACAAAGTGCGGGAAGAGAAACAAGTGGGGGCTGGACACGTGCCAGGCACACCTAATGGGAGACAATATGCTGCTCGGAATCAACGTGCCAACGACAAAGCTCAGAGTTGCTGCTTTTGCTGGGGCAAAAAATGA

>Glyma.08g349500.2 sequence-type=CDS polypeptide=Glyma.08g349500.2.p locus=Glyma.08g349500 ID=Glyma.08g349500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTCAACATTCTAATGTTCCAAAGTTTGGCAATCAGGAGAGTGAAGACAACGTTTTAGACACAGCTCATTCTGACAAAGCCCAGAAAGGTCAGTCTGGTTCAAAGATGATTAATCCAAATGACACCAAGGAAAATTCGGACATAGTTTCTTCTGCTGACCTACCCCATTCAAAACCCAGAGTTCATTCAGAGGATCCATCTGGAAAGGGATCAGTGAGAACAACACATGAGTTACAAAAGAGTAGGGAGGATGGTGATCCTAAACAATTTACTGACTCTCCAGCTCGCCATGGTGGCGGTGATTCTTCCCATCGAGGTCATGGAGTAGGTTCTGCTGACAACCGTAAAAGACCTTCAAGACAAAGTACTGGGCCTGAGCACAACATTGACCGTTCACCCCTTCATCGCCAGGCAAAAACCCCTGGCAGAGATAGTCCTTCTTGGGAAGGAAAAAATTCATATGATAGCAGCCATGGTACCCCAGGAAGGTCCCGATTGAGACCATCTTACCGAGGGGATGAAACTCCTGATGAAGGTGCTGCTGTTCCAAAGTTTGGTGAGTGGGATGAGAGCAACCCTGCATCAGCTGATGGCTACACTCACATTTTCAACAAAGTGCGGGAAGAGAAACAAGTGGGGGCTGGACACGTGCCAGGCACACCTAATGGGAGACAATATGCTGCTCGGAATCAACGTGCCAACGACAAAGCTCAGAGTTGCTGCTTTTGCTGGGGCAAAAAATGA

>Glyma.08g349500.3 sequence-type=CDS polypeptide=Glyma.08g349500.3.p locus=Glyma.08g349500 ID=Glyma.08g349500.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTGAGAGTGAAGACAACGTTTTAGACACAGCTCATTCTGACAAAGCCCAGAAAGGTCAGTCTGGTTCAAAGATGATTAATCCAAATGACACCAAGGAAAATTCGGACATAGTTTCTTCTGCTGACCTACCCCATTCAAAACCCAGAGTTCATTCAGAGGATCCATCTGGAAAGGGATCAGTGAGAACAACACATGAGTTACAAAAGAGTAGGGAGGATGGTGATCCTAAACAATTTACTGACTCTCCAGCTCGCCATGGTGGCGGTGATTCTTCCCATCGAGGTCATGGAGTAGGTTCTGCTGACAACCGTAAAAGACCTTCAAGACAAAGTACTGGGCCTGAGCACAACATTGACCGTTCACCCCTTCATCGCCAGGCAAAAACCCCTGGCAGAGATAGTCCTTCTTGGGAAGGAAAAAATTCATATGATAGCAGCCATGGTACCCCAGGAAGGTCCCGATTGAGACCATCTTACCGAGGGGATGAAACTCCTGATGAAGGTGCTGCTGTTCCAAAGTTTGGTGAGTGGGATGAGAGCAACCCTGCATCAGCTGATGGCTACACTCACATTTTCAACAAAGTGCGGGAAGAGAAACAAGTGGGGGCTGGACACGTGCCAGGCACACCTAATGGGAGACAATATGCTGCTCGGAATCAACGTGCCAACGACAAAGCTCAGAGTTGCTGCTTTTGCTGGGGCAAAAAATGA

Predicted protein sequences of Glyma.08g349500

Limit To All Plant Sequences

>Glyma.08g349500.1.p sequence-type=predicted peptide transcript=Glyma.08g349500.1 locus=Glyma.08g349500 ID=Glyma.08g349500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSFVSFLCFFSVDNSEQHSNVPKFGNQESEDNVLDTAHSDKAQKGQSGSKMINPNDTKENSDIVSSADLPHSKPRVHSEDPSGKGSVRTTHELQKSREDGDPKQFTDSPARHGGGDSSHRGHGVGSADNRKRPSRQSTGPEHNIDRSPLHRQAKTPGRDSPSWEGKNSYDSSHGTPGRSRLRPSYRGDETPDEGAAVPKFGEWDESNPASADGYTHIFNKVREEKQVGAGHVPGTPNGRQYAARNQRANDKAQSCCFCWGKK*

>Glyma.08g349500.2.p sequence-type=predicted peptide transcript=Glyma.08g349500.2 locus=Glyma.08g349500 ID=Glyma.08g349500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAQHSNVPKFGNQESEDNVLDTAHSDKAQKGQSGSKMINPNDTKENSDIVSSADLPHSKPRVHSEDPSGKGSVRTTHELQKSREDGDPKQFTDSPARHGGGDSSHRGHGVGSADNRKRPSRQSTGPEHNIDRSPLHRQAKTPGRDSPSWEGKNSYDSSHGTPGRSRLRPSYRGDETPDEGAAVPKFGEWDESNPASADGYTHIFNKVREEKQVGAGHVPGTPNGRQYAARNQRANDKAQSCCFCWGKK*

>Glyma.08g349500.3.p sequence-type=predicted peptide transcript=Glyma.08g349500.3 locus=Glyma.08g349500 ID=Glyma.08g349500.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAESEDNVLDTAHSDKAQKGQSGSKMINPNDTKENSDIVSSADLPHSKPRVHSEDPSGKGSVRTTHELQKSREDGDPKQFTDSPARHGGGDSSHRGHGVGSADNRKRPSRQSTGPEHNIDRSPLHRQAKTPGRDSPSWEGKNSYDSSHGTPGRSRLRPSYRGDETPDEGAAVPKFGEWDESNPASADGYTHIFNKVREEKQVGAGHVPGTPNGRQYAARNQRANDKAQSCCFCWGKK*

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