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Report for Sequence Feature Glyma.08g345800

Feature Type:gene_model
Chromosome:Gm08
Start:46060930
stop:46064581
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.08g345800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G07360.1AT plant U-box 9 JGI N/AIEA
GO:0016567GO-bp protein ubiquitination EnsemblGenomesN/AIEA
GO:0016567GO-bp protein ubiquitination JGI N/AIEA
GO:0000151GO-cc ubiquitin ligase complex JGI N/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0005737GO-cc cytoplasm EnsemblGenomesN/AIEA
GO:0004842GO-mf ubiquitin-protein transferase activity EnsemblGenomesN/AIEA
GO:0004842GO-mf ubiquitin-protein ligase activity JGI N/AIEA
GO:0005488GO-mf binding EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding EnsemblGenomesN/AIEA
GO:0016740GO-mf transferase activity EnsemblGenomesN/AIEA
PTHR22849Panther WDSAM1 PROTEIN JGI N/AIEA
PF04564PFAM U-box domain JGI N/AIEA
PF05804PFAM Kinesin-associated protein (KAP) JGI N/AIEA

Expression Patterns of Glyma.08g345800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.08g345800 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma08g45980 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.08g345800
>Glyma.08g345800.1 sequence-type=CDS polypeptide=Glyma.08g345800.1.p locus=Glyma.08g345800 ID=Glyma.08g345800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCAAAGCCAGGGGTGTTGGAGTCTGATCCAGGGGTGATGGTGAAGAAGGCCAAAGAGTTGAAGAGGGAGCTTCAGAGGTTGGTGAAGTCTATTGTGCATGATGAGGATTGCAGCACTGAGACCATTGATCAGGCCAAAGAGACTCTCTGTGTTCTCAAGGAGTTGAAGCTCAGAAACAGGTCTTCACTGTCTCTGAAGCTTCACAACAAGAGTGTCGCTTCTTCTTGCCCTGATGAATTCAAGTGCCCTCTTTCCAAGGAATTGATGAGAGATCCTGTCATTGTGGCTTCTGGTCAGACATATGACAGACCTTTCATTCAAAAATGGCTAAATGCTGGAAATAGGACTTGCCCTCGTACACATCAAGTCCTTTCACACACTGTGCTTACACCAAATCATCTAATAAGGGAAATGATTGAGCAATGGTCTAAAAACCAGGGGATTGAATTGTCGAATACTGTTCAATATATTGATGAGGAAGGTTTAAACGAAGCCGACCGTGAGCATTTTCTTTGTTTGCTTAAGAAAATGTCATCAACACTTTCTGATCAGAAGACGGCTGCAAAAGAACTGCGCTTGCTGACAAAAAAGTATCCTTGTTTCCGGGTACTCTTCTGTGATTCTGCAGATGCCATTCCCCAATTGCTTAAGCCAATTTGTGGCAGTGATTCTTTTGGTAGTGTTCACCCTGATCTCCAAGAAGATGTAATCACAACACTCCTCAACATCTCTATTCATGATAACAACAAAAAGCTAGTGGCTGAAACTCCTATGGTAATTCCTCTCCTTATGAGAGCATTGAGATCCGGAACAATTGAAACGAGGAGCAATGCCGCAGCTGCGCTTTTCACTTTATCAGCTCTCGACTCAAACAAGGAACTCATAGGGAAATCTGGAGTTTTGAAGCCGTTAATTGACCTCTTGGAAGAAGGGCATCCCTTAGCCATGAAGGATGTTGCTTCAGCAATTTTTAACATATGTGTAATGCATGAGAACAAGGCAAGAGCCGAGAAGGACGGCGCAGTGAGGGTGATTTTGGCAAAGATAAATAAGCAGATTCATGTTGCTGAGTTACTAGCTATTCTTGCACTGCTTTCAAGTCACCAGAGGGCTGTTCATGACATGGGAGATCTTGGAGCTGTTCCTAGCTTGCTGAGGATCATCAGAGAGAGCTCATGCGAACGCAACAAGGAGAATTGTGTAGCAATCCTTCAAACCATTTGTCTGTATGATAGATCAAAGTTGAAGGAAATAAGGGAAGAGGAGAACAGCCACAAAACAATCTCTGAGCTAGCAAAGCATGGAACATCAAGGGCTAAGAGGAAAGCTAGTGGAATTCTTGAGAGATTGAATAGGGCTGTTAATATCACACACACTGCATAA
Predicted protein sequences of Glyma.08g345800
>Glyma.08g345800.1.p sequence-type=predicted peptide transcript=Glyma.08g345800.1 locus=Glyma.08g345800 ID=Glyma.08g345800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAKPGVLESDPGVMVKKAKELKRELQRLVKSIVHDEDCSTETIDQAKETLCVLKELKLRNRSSLSLKLHNKSVASSCPDEFKCPLSKELMRDPVIVASGQTYDRPFIQKWLNAGNRTCPRTHQVLSHTVLTPNHLIREMIEQWSKNQGIELSNTVQYIDEEGLNEADREHFLCLLKKMSSTLSDQKTAAKELRLLTKKYPCFRVLFCDSADAIPQLLKPICGSDSFGSVHPDLQEDVITTLLNISIHDNNKKLVAETPMVIPLLMRALRSGTIETRSNAAAALFTLSALDSNKELIGKSGVLKPLIDLLEEGHPLAMKDVASAIFNICVMHENKARAEKDGAVRVILAKINKQIHVAELLAILALLSSHQRAVHDMGDLGAVPSLLRIIRESSCERNKENCVAILQTICLYDRSKLKEIREEENSHKTISELAKHGTSRAKRKASGILERLNRAVNITHTA*






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