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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G24200.1 | AT | FAD/NAD(P)-binding oxidoreductase family protein | JGI | N/A | IEA |
| GO:0006744 | GO-bp | ubiquinone biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | EnsemblGenomes | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | JGI | N/A | IEA |
| GO:0005739 | GO-cc | mitochondrion | EnsemblGenomes | N/A | IEA |
| GO:0005743 | GO-cc | mitochondrial inner membrane | EnsemblGenomes | N/A | IEA |
| GO:0016020 | GO-cc | membrane | EnsemblGenomes | N/A | IEA |
| GO:0016021 | GO-cc | integral component of membrane | JGI | N/A | IEA |
| GO:0031314 | GO-cc | extrinsic component of mitochondrial inner membrane | EnsemblGenomes | N/A | IEA |
| GO:0004497 | GO-mf | monooxygenase activity | EnsemblGenomes | N/A | IEA |
| GO:0004506 | GO-mf | squalene monooxygenase activity | JGI | N/A | IEA |
| GO:0016491 | GO-mf | oxidoreductase activity | EnsemblGenomes | N/A | IEA |
| GO:0016709 | GO-mf | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen | EnsemblGenomes | N/A | IEA |
| GO:0016712 | GO-mf | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen | EnsemblGenomes | N/A | IEA |
| GO:0050660 | GO-mf | flavin adenine dinucleotide binding | EnsemblGenomes | N/A | IEA |
| GO:0050660 | GO-mf | flavin adenine dinucleotide binding | JGI | N/A | IEA |
| GO:0071949 | GO-mf | FAD binding | EnsemblGenomes | N/A | IEA |
| KOG3855 | KOG | Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis | JGI | N/A | IEA |
| PTHR13789 | Panther | MONOOXYGENASE | JGI | N/A | IEA |
| PTHR13789:SF5 | Panther | UBIQUINONE BIOSYNTHESIS MONOOXYGENASE COQ6 | JGI | N/A | IEA |
| PF01494 | PFAM | FAD binding domain | JGI | N/A | IEA |
| GN7V-43358 | SoyCyc9-rxn | Enzyme name not determined | Plant Metabolic Network | ISS |
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Glyma.08g345200 not represented in the dataset |
Glyma.08g345200 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma08g45905 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.08g345200.1 sequence-type=CDS polypeptide=Glyma.08g345200.1.p locus=Glyma.08g345200 ID=Glyma.08g345200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGAACCGAGTGATAAAGAAGACCGTTTCAAATATCTGTGCTCTCAAGGTTCCAAGAAAGTCTTTTTGTAGTACTGAGGGTGTGAAAGTTGCTGGTTGCTCTATTCCAGAGGTTTCCAATGACCATGAGAAGAAGCAGGCTATTAGCAAAGTTATTCCACAATATGATATTGCTATTGTTGGAGGAGGCATGGTTGGCATGGCTTTATCTTGTTTCTTGGCAAGTAATCCAATGACAAAGCAGTTGAGTGTTGCAATTATTGATAGCAATCCAGCTCTTGGAAGTAGCTTGCACATCAAGAAGGAAGATCCCCCTGATCCAAGAGTCAGTACAGTAACTCCTGCTTCTATTTCTTTTCTCCAAGATGCTGGTGCATGGAAATATGTTGAGCAAAATAGACGTGCTTATTTTAATACAATGCAGGTCTGGGATTATACTGGTTTGGGGTATGCTAGATATCATGCAAGAGATGTAAATAAAGACTTTCTAGGGTGCGTGGCAGAGAATAAAGTGCTCCATAATGCCTTATTGTCATGTGTAAAGGATTCTGATTTCAAGACAACAATCTATCCTTTGAGGTTAAGTTCAATGACTTTGAATACAAGCTCTATGTCTATGGCGGAGGAGAATCCAACATCCAAAGAACCACCATCTGCTCAAGGTCATGGTGCAGAACTGCAGCTTAGTGATGGCAGTAGCATATATGCAAAGTTGGTGGTTGGCGCTGATGGAGGAAAATCACATGTTAGGGAGTTAGCAGGAATCAAAACAACTGGATGGAATTACTCCCAGAATGCAATAATCTGCACGGTGGAGCATACTTATGAAAATGAATGTGCATGGCAACGTTTTCTACCAACAGGTCCAATTGCTCTTTTACCCATGGGTGATAAGTTTAGCAATATTGTTTGGACCATGAGCCCAACAGAGTCAAATAACCGCAAGTCAATTACCGAGGAAGAATTTTTAAAGGATGTGAATTATGCTTTAGATTATGGACATGGACCTCATCCTACATCAAGCTTATCAGGAACTCGAGACGTGTTCTCTTGGTTTAAAACGGATGCAACACTATCAACTAATGAATTCTTTGAAATTCCTCCAAAAGTAACAAGGTTGGCATCTGAAAGGATGGTGTTTCCTTTGTCTTTAAGGCATGCCAATTCCTATGCATTGAAACGTGTGGTTCTTATTGGGGATGCAGCCCACACAGTCCATCCTCTTGCTGGTCAAGGAGTTAATTTGGGTTTTGGAGATGCATTTTCTCTTTCAAGAATTATTGCAGAGGGGATTGCTTTGGGCACTGATATTGGAGAGGTAAATATGTTAAAGAAGTATGAAGCAGAGAGAAAAACAGCAAATATTATGATGATGGCAATCCTTGATGGCGTCCAAAAAGCCTATTCTATTGATTTTGGACCTTTTAATATTCTGCGAGCTGCAGCCTTCCATGGGGCAAACTATATATCACCACTCAAAAGAAGTATCATTTCCTATGCTTCAGGGGAACATAAATTACCCATTTTCTTCTGA
>Glyma.08g345200.1.p sequence-type=predicted peptide transcript=Glyma.08g345200.1 locus=Glyma.08g345200 ID=Glyma.08g345200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MNRVIKKTVSNICALKVPRKSFCSTEGVKVAGCSIPEVSNDHEKKQAISKVIPQYDIAIVGGGMVGMALSCFLASNPMTKQLSVAIIDSNPALGSSLHIKKEDPPDPRVSTVTPASISFLQDAGAWKYVEQNRRAYFNTMQVWDYTGLGYARYHARDVNKDFLGCVAENKVLHNALLSCVKDSDFKTTIYPLRLSSMTLNTSSMSMAEENPTSKEPPSAQGHGAELQLSDGSSIYAKLVVGADGGKSHVRELAGIKTTGWNYSQNAIICTVEHTYENECAWQRFLPTGPIALLPMGDKFSNIVWTMSPTESNNRKSITEEEFLKDVNYALDYGHGPHPTSSLSGTRDVFSWFKTDATLSTNEFFEIPPKVTRLASERMVFPLSLRHANSYALKRVVLIGDAAHTVHPLAGQGVNLGFGDAFSLSRIIAEGIALGTDIGEVNMLKKYEAERKTANIMMMAILDGVQKAYSIDFGPFNILRAAAFHGANYISPLKRSIISYASGEHKLPIFF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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