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Report for Sequence Feature Glyma.08g340000

Feature Type:gene_model
Chromosome:Gm08
Start:45625607
stop:45632724
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.08g340000
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G80770.1AT P-loop containing nucleoside triphosphate hydrolases superfamily protein JGI N/AIEA
GO:0015684GO-bp ferrous iron transport JGI N/AIEA
GO:0016021GO-cc integral component of membrane JGI N/AIEA
GO:0005525GO-mf GTP binding EnsemblGenomesN/AIEA
GO:0005525GO-mf GTP binding JGI N/AIEA
GO:0015093GO-mf ferrous iron transmembrane transporter activity JGI N/AIEA
PTHR11702Panther DEVELOPMENTALLY REGULATED GTP-BINDING PROTEIN-RELATED JGI N/AIEA
PTHR11702:SF4Panther PROTEIN, PUTATIVE-RELATED JGI N/AIEA
PF01926PFAM 50S ribosome-binding GTPase JGI N/AIEA
PF02421PFAM Ferrous iron transport protein B JGI N/AIEA
PF06858PFAM Nucleolar GTP-binding protein 1 (NOG1) JGI N/AIEA

Expression Patterns of Glyma.08g340000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.08g340000 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma08g45370 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.08g340000
>Glyma.08g340000.2 sequence-type=transcript locus=Glyma.08g340000 ID=Glyma.08g340000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AGGCATCGAACTCAAACATTATCGGTGGACAGAAACACCACTGAACGAGGTTGCTTGCTCCGACGCCGAAATGAAAGCCCCTTCCTCTCTTTTCCTCAAAGGCCACGTTCTCCCTTCTTCCATTTTTCTCCTCAGAAACTCCAAAGGAACACCCAATGTGAAAATGCACCCCATCTGGTGCTTATGTAAAGCCATTCAAACTAATTCATATGAAATTTCCAATGGAAGCTATCATCCCACTGTGCAACAAACAACAGAAAAGAAGACAATGGAAAAGCTATCCAGGAAAGTTGAATCTATTGGGGCATTTCAAAAGTTGCCCATAGTGATGCCATCTATTGACATTATTGGCTCTGCACTCAGAAAGGCGAGGAAGGTTTCTCCAACGAAAGGAATTGCCAACATTGCGAAAAGGGAGAAAAATAAGGGTGCAAAGCAACTTGATGCGTTGATGAAAGAAATTGCTGTTCCCTTGAGGACGTATGTGGAGAATTTTCCTAACAAAATGCATCTTCATCCTTATGAGAGATCTCTTATTGAGCTGACACTTGGAGATGGATACTACGAAATGGTGCTACGAAAGGTAGACAGTTTAAGGAAGAGGGTAGTATCTGTTGGAAAGGAACATGCTTCACTTTGCGCTAAGTCTTCATCAAAGCGAGAAGCAGAGGAAAGGCTGAATGAGGGGCTTAAGAAAATTGAAGAGATTTTTGCTCAAGAACGAAAAGTTGTTGATGATTTGTTAGGCATAGCCAAGACTCTCAGGGCAATGCCTGTAATTAATTTGGAAACACCAACTCTCTGCCTTGTTGGAGCTCCTAATGTAGGCAAATCTTCTTTGGTCCATGTACTCTCTACTGGCAAGCCTGAGATTTGTAACTATCCCTTCACAACAAGAGGAATTCTTATGGGTCATATTATTTTAAACTTTCAGAAGTTTCAGGTAACAGATACTCCGGGCCTGCTAAGGAGACATGATGAGGACAGGAATAATTTGGAAAAGTTGACTCTGGCTGTCCTTTCGCACCTGCCGACAGCAGTTTTGTATGTCCATGACCTTTCTGGGGAGTGTGGCACCTCACCTTCTGATCAGTTTTCAATATACAAAGAACTCAGAGAAAGGTTCAATGGACATTTATGGCTTGATGTCGTGTCAAAATCTGATTTGTTGAAGACGTCTCCTGTAGTCTATGCAACAGACGAGCCTCATCCCTCCCAACTCGAGCTTGAAAAGTACCGGAAATCAGGTCCCAATGGAGCTATTAACGTATCTGTCAAAACACAAGGAGGGCTACATGAGCTAAAGCAGAGAGTGCATGAACTGCTTAATTTGCAGATGGCCAAGATAAATGATATAAGCAACAACCAGGAGAAGTGAAAGGTGTCACTCCACTAAGGGTTGATATCAAACTTGTGAAGAAACTTCCTGATCAAATAGGGAAGTCTGAAACCTTCATGAGCCAGAAGCTTATCTTTGTAAAATATGTTAGCAGCTCTGTGGCCAGCCTCCAAGCAGGAAAAGAAGCAAAGGCTTCTTAATTAATACCTTCAAGCAATTAAGCATTGGTAGGTTGAGCATACGAAACTTCCAGAAAATGTTCAGTCACTTTTAGCTTTGTTGAGGAGATCATGTTCCACCCGTATTGGGCCTTCTTGAAGAAACAATAAATGCTTGTTTATCAACTTTTCAGTTCATTGATTGTCATTGGCTTCAATCATGTGTCTTAACTTCTTAAGTCCATTGTCAGAAGTCTTCATAAATTGGttaatgttaagatctgaattgatattgagatataatgtattgatatATTAGATATGttcataat

>Glyma.08g340000.3 sequence-type=transcript locus=Glyma.08g340000 ID=Glyma.08g340000.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
AGGCATCGAACTCAAACATTATCGGTGGACAGAAACACCACTGAACGAGGTTGCTTGCTCCGACGCCGAAATGAAAGCCCCTTCCTCTCTTTTCCTCAAAGGCCACGTTCTCCCTTCTTCCATTTTTCTCCTCAGAAACTCCAAAGGAACACCCAATGTGAAAATGCACCCCATCTGGTGCTTATGTAAAGCCATTCAAACTAATTCATATGAAATTTCCAATGGAAGCTATCATCCCACTGTGCAACAAACAACAGAAAAGAAGACAATGGAAAAGCTATCCAGGAAAGTTGAATCTATTGGGGCATTTCAAAAGTTGCCCATAGTGATGCCATCTATTGACATTATTGGCTCTGCACTCAGAAAGGCGAGGAAGGTTTCTCCAACGAAAGGAATTGCCAACATTGCGAAAAGGGAGAAAAATAAGGGTGCAAAGCAACTTGATGCGTTGATGAAAGAAATTGCTGTTCCCTTGAGGACGTATGTGGAGAATTTTCCTAACAAAATGCATCTTCATCCTTATGAGAGATCTCTTATTGAGCTGACACTTGGAGATGGATACTACGAAATGGTGCTACGAAAGGTAGACAGTTTAAGGAAGAGGGTAGTATCTGTTGGAAAGGAACATGCTTCACTTTGCGCTAAGTCTTCATCAAAGCGAGAAGCAGAGGAAAGGCTGAATGAGGGGCTTAAGAAAATTGAAGAGATTTTTGCTCAAGAACGAAAAGTTGTTGATGATTTGTTAGGCATAGCCAAGACTCTCAGGGCAATGCCTGTAATTAATTTGGAAACACCAACTCTCTGCCTTGTTGGAGCTCCTAATGTAGGCAAATCTTCTTTGGTCCATGTACTCTCTACTGGCAAGCCTGAGATTTGTAACTATCCCTTCACAACAAGAGGAATTCTTATGGGTCATATTATTTTAAACTTTCAGAAGTTTCAGGTAACAGATACTCCGGGCCTGCTAAGGAGACATGATGGAATAATTTGGAAAAGTTGACTCTGGCTGTCCTTTCGCACCTGCCGACAGCAGTTTTGTATGTCCATGACCTTTCTGGGGAGTGTGGCACCTCACCTTCTGATCAGTTTTCAATATACAAAGAACTCAGAGAAAGGTTCAATGGACATTTATGGCTTGATGTCGTGTCAAAATCTGATTTGTTGAAGACGTCTCCTGTAGTCTATGCAACAGACGAGCCTCATCCCTCCCAACTCGAGCTTGAAAAGTACCGGAAATCAGGTCCCAATGGAGCTATTAACGTATCTGTCAAAACACAAGGAGGGCTACATGAGCTAAAGCAGAGAGTGCATGAACTGCTTAATTTGCAGATGGCCAAGATAAATGATATAAGCAACAACCAGGAGAAGTGAAAGGTGTCACTCCACTAAGGGTTGATATCAAACTTGTGAAGAAACTTCCTGATCAAATAGGGAAGTCTGAAACCTTCATGAGCCAGAAGCTTATCTTTGTAAAATATGTTAGCAGCTCTGTGGCCAGCCTCCAAGCAGGAAAAGAAGCAAAGGCTTCTTAATTAATACCTTCAAGCAATTAAGCATTGGTAGGTTGAGCATACGAAACTTCCAGAAAATGTTCAGTCACTTTTAGCTTTGTTGAGGAGATCATGTTCCACCCGTATTGGGCCTTCTTGAAGAAACAATAAATGCTTGTTTATCAACTTTTCAGTTCATTGATTGTCATTGGCTTCAATCATGTGTCTTAACTTCTTAAGTCCATTGTCAGAAGTCTTCATAAATTGGttaatgttaagatctgaattgatattgagatataatgtattgatatATTAGATATGttcataat
Coding sequences of Glyma.08g340000
>Glyma.08g340000.1 sequence-type=CDS polypeptide=Glyma.08g340000.1.p locus=Glyma.08g340000 ID=Glyma.08g340000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAAGCCCCTTCCTCTCTTTTCCTCAAAGGCCACGTTCTCCCTTCTTCCATTTTTCTCCTCAGAAACTCCAAAGTTATTTTCAATTGGGTACATAATACAGGAACACCCAATGTGAAAATGCACCCCATCTGGTGCTTATGTAAAGCCATTCAAACTAATTCATATGAAATTTCCAATGGAAGCTATCATCCCACTGTGCAACAAACAACAGAAAAGAAGACAATGGAAAAGCTATCCAGGAAAGTTGAATCTATTGGGGCATTTCAAAAGTTGCCCATAGTGATGCCATCTATTGACATTATTGGCTCTGCACTCAGAAAGGCGAGGAAGGTTTCTCCAACGAAAGGAATTGCCAACATTGCGAAAAGGGAGAAAAATAAGGGTGCAAAGCAACTTGATGCGTTGATGAAAGAAATTGCTGTTCCCTTGAGGACGTATGTGGAGAATTTTCCTAACAAAATGCATCTTCATCCTTATGAGAGATCTCTTATTGAGCTGACACTTGGAGATGGATACTACGAAATGGTGCTACGAAAGGTAGACAGTTTAAGGAAGAGGGTAGTATCTGTTGGAAAGGAACATGCTTCACTTTGCGCTAAGTCTTCATCAAAGCGAGAAGCAGAGGAAAGGCTGAATGAGGGGCTTAAGAAAATTGAAGAGATTTTTGCTCAAGAACGAAAAGTTGTTGATGATTTGTTAGGCATAGCCAAGACTCTCAGGGCAATGCCTGTAATTAATTTGGAAACACCAACTCTCTGCCTTGTTGGAGCTCCTAATGTAGGCAAATCTTCTTTGGTCCATGTACTCTCTACTGGCAAGCCTGAGATTTGTAACTATCCCTTCACAACAAGAGGAATTCTTATGGGTCATATTATTTTAAACTTTCAGAAGTTTCAGGTAACAGATACTCCGGGCCTGCTAAGGAGACATGATGAGGACAGGAATAATTTGGAAAAGTTGACTCTGGCTGTCCTTTCGCACCTGCCGACAGCAGTTTTGTATGTCCATGACCTTTCTGGGGAGTGTGGCACCTCACCTTCTGATCAGTTTTCAATATACAAAGAACTCAGAGAAAGGTTCAATGGACATTTATGGCTTGATGTCGTGTCAAAATCTGATTTGTTGAAGACGTCTCCTGTAGTCTATGCAACAGACGAGCCTCATCCCTCCCAACTCGAGCTTGAAAAGTACCGGAAATCAGGTCCCAATGGAGCTATTAACGTATCTGTCAAAACACAAGGAGGGCTACATGAGCTAAAGCAGAGAGTGCATGAACTGCTTAATTTGCAGATGGCCAAGATAAATGATATAAGCAACAACCAGGAGAAGTGA

>Glyma.08g340000.2 sequence-type=CDS polypeptide=Glyma.08g340000.2.p locus=Glyma.08g340000 ID=Glyma.08g340000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAAGCCCCTTCCTCTCTTTTCCTCAAAGGCCACGTTCTCCCTTCTTCCATTTTTCTCCTCAGAAACTCCAAAGGAACACCCAATGTGAAAATGCACCCCATCTGGTGCTTATGTAAAGCCATTCAAACTAATTCATATGAAATTTCCAATGGAAGCTATCATCCCACTGTGCAACAAACAACAGAAAAGAAGACAATGGAAAAGCTATCCAGGAAAGTTGAATCTATTGGGGCATTTCAAAAGTTGCCCATAGTGATGCCATCTATTGACATTATTGGCTCTGCACTCAGAAAGGCGAGGAAGGTTTCTCCAACGAAAGGAATTGCCAACATTGCGAAAAGGGAGAAAAATAAGGGTGCAAAGCAACTTGATGCGTTGATGAAAGAAATTGCTGTTCCCTTGAGGACGTATGTGGAGAATTTTCCTAACAAAATGCATCTTCATCCTTATGAGAGATCTCTTATTGAGCTGACACTTGGAGATGGATACTACGAAATGGTGCTACGAAAGGTAGACAGTTTAAGGAAGAGGGTAGTATCTGTTGGAAAGGAACATGCTTCACTTTGCGCTAAGTCTTCATCAAAGCGAGAAGCAGAGGAAAGGCTGAATGAGGGGCTTAAGAAAATTGAAGAGATTTTTGCTCAAGAACGAAAAGTTGTTGATGATTTGTTAGGCATAGCCAAGACTCTCAGGGCAATGCCTGTAATTAATTTGGAAACACCAACTCTCTGCCTTGTTGGAGCTCCTAATGTAGGCAAATCTTCTTTGGTCCATGTACTCTCTACTGGCAAGCCTGAGATTTGTAACTATCCCTTCACAACAAGAGGAATTCTTATGGGTCATATTATTTTAAACTTTCAGAAGTTTCAGGTAACAGATACTCCGGGCCTGCTAAGGAGACATGATGAGGACAGGAATAATTTGGAAAAGTTGACTCTGGCTGTCCTTTCGCACCTGCCGACAGCAGTTTTGTATGTCCATGACCTTTCTGGGGAGTGTGGCACCTCACCTTCTGATCAGTTTTCAATATACAAAGAACTCAGAGAAAGGTTCAATGGACATTTATGGCTTGATGTCGTGTCAAAATCTGATTTGTTGAAGACGTCTCCTGTAGTCTATGCAACAGACGAGCCTCATCCCTCCCAACTCGAGCTTGAAAAGTACCGGAAATCAGGTCCCAATGGAGCTATTAACGTATCTGTCAAAACACAAGGAGGGCTACATGAGCTAAAGCAGAGAGTGCATGAACTGCTTAATTTGCAGATGGCCAAGATAAATGATATAAGCAACAACCAGGAGAAGTGA

>Glyma.08g340000.3 sequence-type=CDS polypeptide=Glyma.08g340000.3.p locus=Glyma.08g340000 ID=Glyma.08g340000.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAAGCCCCTTCCTCTCTTTTCCTCAAAGGCCACGTTCTCCCTTCTTCCATTTTTCTCCTCAGAAACTCCAAAGGAACACCCAATGTGAAAATGCACCCCATCTGGTGCTTATGTAAAGCCATTCAAACTAATTCATATGAAATTTCCAATGGAAGCTATCATCCCACTGTGCAACAAACAACAGAAAAGAAGACAATGGAAAAGCTATCCAGGAAAGTTGAATCTATTGGGGCATTTCAAAAGTTGCCCATAGTGATGCCATCTATTGACATTATTGGCTCTGCACTCAGAAAGGCGAGGAAGGTTTCTCCAACGAAAGGAATTGCCAACATTGCGAAAAGGGAGAAAAATAAGGGTGCAAAGCAACTTGATGCGTTGATGAAAGAAATTGCTGTTCCCTTGAGGACGTATGTGGAGAATTTTCCTAACAAAATGCATCTTCATCCTTATGAGAGATCTCTTATTGAGCTGACACTTGGAGATGGATACTACGAAATGGTGCTACGAAAGGTAGACAGTTTAAGGAAGAGGGTAGTATCTGTTGGAAAGGAACATGCTTCACTTTGCGCTAAGTCTTCATCAAAGCGAGAAGCAGAGGAAAGGCTGAATGAGGGGCTTAAGAAAATTGAAGAGATTTTTGCTCAAGAACGAAAAGTTGTTGATGATTTGTTAGGCATAGCCAAGACTCTCAGGGCAATGCCTGTAATTAATTTGGAAACACCAACTCTCTGCCTTGTTGGAGCTCCTAATGTAGGCAAATCTTCTTTGGTCCATGTACTCTCTACTGGCAAGCCTGAGATTTGTAACTATCCCTTCACAACAAGAGGAATTCTTATGGGTCATATTATTTTAAACTTTCAGAAGTTTCAGGTAACAGATACTCCGGGCCTGCTAAGGAGACATGATGGAATAATTTGGAAAAGTTGA
Predicted protein sequences of Glyma.08g340000
>Glyma.08g340000.1.p sequence-type=predicted peptide transcript=Glyma.08g340000.1 locus=Glyma.08g340000 ID=Glyma.08g340000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MKAPSSLFLKGHVLPSSIFLLRNSKVIFNWVHNTGTPNVKMHPIWCLCKAIQTNSYEISNGSYHPTVQQTTEKKTMEKLSRKVESIGAFQKLPIVMPSIDIIGSALRKARKVSPTKGIANIAKREKNKGAKQLDALMKEIAVPLRTYVENFPNKMHLHPYERSLIELTLGDGYYEMVLRKVDSLRKRVVSVGKEHASLCAKSSSKREAEERLNEGLKKIEEIFAQERKVVDDLLGIAKTLRAMPVINLETPTLCLVGAPNVGKSSLVHVLSTGKPEICNYPFTTRGILMGHIILNFQKFQVTDTPGLLRRHDEDRNNLEKLTLAVLSHLPTAVLYVHDLSGECGTSPSDQFSIYKELRERFNGHLWLDVVSKSDLLKTSPVVYATDEPHPSQLELEKYRKSGPNGAINVSVKTQGGLHELKQRVHELLNLQMAKINDISNNQEK*

>Glyma.08g340000.2.p sequence-type=predicted peptide transcript=Glyma.08g340000.2 locus=Glyma.08g340000 ID=Glyma.08g340000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MKAPSSLFLKGHVLPSSIFLLRNSKGTPNVKMHPIWCLCKAIQTNSYEISNGSYHPTVQQTTEKKTMEKLSRKVESIGAFQKLPIVMPSIDIIGSALRKARKVSPTKGIANIAKREKNKGAKQLDALMKEIAVPLRTYVENFPNKMHLHPYERSLIELTLGDGYYEMVLRKVDSLRKRVVSVGKEHASLCAKSSSKREAEERLNEGLKKIEEIFAQERKVVDDLLGIAKTLRAMPVINLETPTLCLVGAPNVGKSSLVHVLSTGKPEICNYPFTTRGILMGHIILNFQKFQVTDTPGLLRRHDEDRNNLEKLTLAVLSHLPTAVLYVHDLSGECGTSPSDQFSIYKELRERFNGHLWLDVVSKSDLLKTSPVVYATDEPHPSQLELEKYRKSGPNGAINVSVKTQGGLHELKQRVHELLNLQMAKINDISNNQEK*

>Glyma.08g340000.3.p sequence-type=predicted peptide transcript=Glyma.08g340000.3 locus=Glyma.08g340000 ID=Glyma.08g340000.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MKAPSSLFLKGHVLPSSIFLLRNSKGTPNVKMHPIWCLCKAIQTNSYEISNGSYHPTVQQTTEKKTMEKLSRKVESIGAFQKLPIVMPSIDIIGSALRKARKVSPTKGIANIAKREKNKGAKQLDALMKEIAVPLRTYVENFPNKMHLHPYERSLIELTLGDGYYEMVLRKVDSLRKRVVSVGKEHASLCAKSSSKREAEERLNEGLKKIEEIFAQERKVVDDLLGIAKTLRAMPVINLETPTLCLVGAPNVGKSSLVHVLSTGKPEICNYPFTTRGILMGHIILNFQKFQVTDTPGLLRRHDGIIWKS*






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