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Report for Sequence Feature Glyma.08g337500

Feature Type:gene_model
Chromosome:Gm08
Start:45436451
stop:45456083
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.08g337500
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G13235.3AT ubiquitin family protein JGI N/AIEA
GO:0006508GO-bp proteolysis EnsemblGenomesN/AIEA
GO:0006508GO-bp proteolysis JGI N/AIEA
GO:0004190GO-mf aspartic-type endopeptidase activity EnsemblGenomesN/AIEA
GO:0004190GO-mf aspartic-type endopeptidase activity JGI N/AIEA
GO:0005515GO-mf protein binding EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding JGI N/AIEA
GO:0043130GO-mf ubiquitin binding EnsemblGenomesN/AIEA
KOG0012 KOG DNA damage inducible protein JGI N/AIEA
PTHR12917Panther ASPARTYL PROTEASE DDI-RELATED JGI N/AIEA
PTHR12917:SF1Panther AT13091P JGI N/AIEA
PF00240PFAM Ubiquitin family JGI N/AIEA
PF00627PFAM UBA/TS-N domain JGI N/AIEA
PF09668PFAM Aspartyl protease JGI N/AIEA

Expression Patterns of Glyma.08g337500
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.08g337500
ParalogEvidenceComments
Glyma.18g072500 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.08g337500 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma08g44820 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.08g337500
>Glyma.08g337500.2 sequence-type=transcript locus=Glyma.08g337500 ID=Glyma.08g337500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GGCAACAAGTCACACAGTTTAAAAGGATTTCTAGTCTTCCAACAGTCTTTACTTTGCTCTTTTCACCTCGGCTCAGCACAGCTACCATCGAAAACTAGCCAAGGCTCTGTCTTTTTCCCTTTTTCCTTTTGCTTCAACAACATCGTCGTCACAAATCTagagacagagagagagagagaAAAAAAAAACTGTTGAATTGAAGATGAAGATCACTGTCATGACTGCTGATGAACAAATCATCACGTTGGATGTGGATCCCCACGAATCTGTGGAAAACGTCAAAGCATTGCTCGAGGTTGAGACAAGTGTGGCTCTTCAACAACAGCAGCTTCTGTTTAATGGGAAGGAAGTTAGGAATTCTGAGAAGTTGAGCGCTCTTGGTGTTAAGGATGATGATTtgctgatgatggtatctggtgctggcgctggtgctgctgctTCTAGTGGATCTACCAATGATTTGAGCTTAAATACTGATGGATCTGCTGTCAACCCTGGTGCTTTCCAGCAGCACATTAGACGTGATTCTAATTTGATGGGTCAGCTCTTTCAGAGTGATCCAGAGTTGGCACAAGCTATTTTAGGGAATGATTTGAACAAATTGCAGGAAGTTTTACGATTGCGTCATCACCAAAGAGATGAATTAAAGCGTCAGAAGGAAGAAGAGCTTGCTCTTCTTTATGCTGATCCTTTTGATGTTGAAGCACAAAAGAAGATTGAAGCTGCCATCCGCCAGAAAGGGATTGATGAAAATTGGGCTGCTGCATTAGAACATAATCCTGAAGCTTTTGCTAGAGTGGTCATGTTGTATGTTGATATGGAGGTTAATGGTGTCCCATTGAAGGCATTTGTTGATAGTGGAGCTCAGTCTACCATTATATCAAAAAGCTGTGCTGAGCGTCTTGGATTGTTGAGACTTTTAGATCAGCGTTACAGAGGAATTGCTCATGGAGTTGGCCAGTCAGAAATATTGGGTCGTATACATGTAGCTCCAATCAAGATTGGGAGTATATTTTACCCTTGCTCATTCTTGGTGCTGGATTCTCCCAATATGGAGTTTCTCTTCGGACTGGATATGCTCCGAAAGCACCAGTGTATAATTGATTTGAAAGAAAATGTTTTGCGAGTTGGTGGAGGAGAAGTTTCTGTGCCATTTTTGCAAGAGAAAGACATACCATCTCGGTTTCTAGACGAGGAAAAGTATGCTAAGGAAGCTTCAGGCTCTGGTGGTCAAATTTCATCAGGCAGCAATAATCCATCAACAGGAGGCCACTCTTCTGGTGGAGCTTCTGGTGATAAGGCTAAGGATTCTGAGTTTGAAGCCAAAGTTGCAAAGCTTGTTGAATTGGGATTTGAAAGAAATGCAGTTATACAAGCTCTTCAATTATTCAATGGAAATGAAGAACAGGCAGCTGGGTTTCTTTTTGGGGGCTAGAAACATTTGTTTTGGAAATTGATTGGATTTATTACTTGAAACTATTTTTACTTTTAGGCAATTCCATTACAAATTCTGAATTACAGACGTGATGGCATTTATTgtatattttggtatatgatgaattctgttatagcagtcatgtatttgaatggaaggatatatgaagataatgat

>Glyma.08g337500.3 sequence-type=transcript locus=Glyma.08g337500 ID=Glyma.08g337500.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
GTGAATGTTTATGGAGGGTGTTTGGGAAATACTGTTTTTCATTGGGAATTCTGGGTTGTGCGTTTTTCTTTGTTTGACAACCTAGAAACCAAACCCCATGTGAGAGTTTTTGTTTGATGATTTTTGGTAGGGGATTCATGTGACTTTTGTTAATTTGAGATGGCACATGGAAGACAAGTGTGGCTCTTCAACAACAGCAGCTTCTGTTTAATGGGAAGGAAGTTAGGAATTCTGAGAAGTTGAGCGCTCTTGGTGTTAAGGATGATGATTtgctgatgatggtatctggtgctggcgctggtgctgctgctTCTAGTGGATCTACCAATGATTTGAGCTTAAATACTGATGGATCTGCTGTCAACCCTGGTGCTTTCCAGCAGCACATTAGACGTGATTCTAATTTGATGGGTCAGCTCTTTCAGAGTGATCCAGAGTTGGCACAAGCTATTTTAGGGAATGATTTGAACAAATTGCAGGAAGTTTTACGATTGCGTCATCACCAAAGAGATGAATTAAAGCGTCAGAAGGAAGAAGAGCTTGCTCTTCTTTATGCTGATCCTTTTGATGTTGAAGCACAAAAGAAGATTGAAGCTGCCATCCGCCAGAAAGGGATTGATGAAAATTGGGCTGCTGCATTAGAACATAATCCTGAAGCTTTTGCTAGAGTGGTCATGTTGTATGTTGATATGGAGGTTAATGGTGTCCCATTGAAGGCATTTGTTGATAGTGGAGCTCAGTCTACCATTATATCAAAAAGCTGTGCTGAGCGTCTTGGATTGTTGAGACTTTTAGATCAGCGTTACAGAGGAATTGCTCATGGAGTTGGCCAGTCAGAAATATTGGGTCGTATACATGTAGCTCCAATCAAGATTGGGAGTATATTTTACCCTTGCTCATTCTTGGTGCTGGATTCTCCCAATATGGAGTTTCTCTTCGGACTGGATATGCTCCGAAAGCACCAGTGTATAATTGATTTGAAAGAAAATGTTTTGCGAGTTGGTGGAGGAGAAGTTTCTGTGCCATTTTTGCAAGAGAAAGACATACCATCTCGGTTTCTAGACGAGGAAAAGTATGCTAAGGAAGCTTCAGGCTCTGGTGGTCAAATTTCATCAGGCAGCAATAATCCATCAACAGGAGGCCACTCTTCTGGTGGAGCTTCTGGTGATAAGGCTAAGGATTCTGAGTTTGAAGCCAAAGTTGCAAAGCTTGTTGAATTGGGATTTGAAAGAAATGCAGTTATACAAGCTCTTCAATTATTCAATGGAAATGAAGAACAGGCAGCTGGGTTTCTTTTTGGGGGCTAGAAACATTTGTTTTGGAAATTGATTGGATTTATTACTTGAAACTATTTTTACTTTTAGGCAATTCCATTACAAATTCTGAATTACAGACGTGATGGCATTTATTGTGAGTTGTTCATACTGTAAGGAATGTTTTTATTTAATTGAAAAACTAACTTATTGGTACTCAATGTCTATCATGTAACCTTTAATAGAGGTTGAAGAAATCTAGTTTAGTAGACTTTAGGATA
Coding sequences of Glyma.08g337500
>Glyma.08g337500.1 sequence-type=CDS polypeptide=Glyma.08g337500.1.p locus=Glyma.08g337500 ID=Glyma.08g337500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAGATCACTGTCATGACTGCTGATGAACAAATCATCACGTTGGATGTGGATCCCCACGAATCTGTGGAAAACGTCAAAGCATTGCTCGAGGTTGAGACAAGTGTGGCTCTTCAACAACAGCAGCTTCTGTTTAATGGGAAGGAAGTTAGGAATTCTGAGAAGTTGAGCGCTCTTGGTGTTAAGGATGATGATTTGCTGATGATGGTATCTGGTGCTGGCGCTGGTGCTGCTGCTTCTAGTGGATCTACCAATGATTTGAGCTTAAATACTGATGGATCTGCTGTCAACCCTGGTGCTTTCCAGCAGCACATTAGACGTGATTCTAATTTGATGGGTCAGCTCTTTCAGAGTGATCCAGAGTTGGCACAAGCTATTTTAGGGAATGATTTGAACAAATTGCAGGAAGTTTTACGATTGCGTCATCACCAAAGAGATGAATTAAAGCGTCAGAAGGAAGAAGAGCTTGCTCTTCTTTATGCTGATCCTTTTGATGTTGAAGCACAAAAGAAGATTGAAGCTGCCATCCGCCAGAAAGGGATTGATGAAAATTGGGCTGCTGCATTAGAACATAATCCTGAAGCTTTTGCTAGAGTGGTCATGTTGTATGTTGATATGGAGGTTAATGGTGTCCCATTGAAGGCATTTGTTGATAGTGGAGCTCAGTCTACCATTATATCAAAAAGCTGTGCTGAGCGTCTTGGATTGTTGAGACTTTTAGATCAGCGTTACAGAGGAATTGCTCATGGAGTTGGCCAGTCAGAAATATTGGGTCGTATACATGTAGCTCCAATCAAGATTGGGAGTATATTTTACCCTTGCTCATTCTTGGTGCTGGATTCTCCCAATATGGAGTTTCTCTTCGGACTGGATATGCTCCGAAAGCACCAGTGTATAATTGATTTGAAAGAAAATGTTTTGCGAGTTGGTGGAGGAGAAGTTTCTGTGCCATTTTTGCAAGAGAAAGACATACCATCTCGGTTTCTAGACGAGGAAAAGTATGCTAAGGAAGCTTCAGGCTCTGGTGGTCAAATTTCATCAGGCAGCAATAATCCATCAACAGGAGGCCACTCTTCTGGTGGAGCTTCTGGTGATAAGGCTAAGGATTCTGAGTTTGAAGCCAAAGTTGCAAAGCTTGTTGAATTGGGATTTGAAAGAAATGCAGTTATACAAGCTCTTCAATTATTCAATGGAAATGAAGAACAGGCAGCTGGGTTTCTTTTTGGGGGCTAG

>Glyma.08g337500.2 sequence-type=CDS polypeptide=Glyma.08g337500.2.p locus=Glyma.08g337500 ID=Glyma.08g337500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAGATCACTGTCATGACTGCTGATGAACAAATCATCACGTTGGATGTGGATCCCCACGAATCTGTGGAAAACGTCAAAGCATTGCTCGAGGTTGAGACAAGTGTGGCTCTTCAACAACAGCAGCTTCTGTTTAATGGGAAGGAAGTTAGGAATTCTGAGAAGTTGAGCGCTCTTGGTGTTAAGGATGATGATTTGCTGATGATGGTATCTGGTGCTGGCGCTGGTGCTGCTGCTTCTAGTGGATCTACCAATGATTTGAGCTTAAATACTGATGGATCTGCTGTCAACCCTGGTGCTTTCCAGCAGCACATTAGACGTGATTCTAATTTGATGGGTCAGCTCTTTCAGAGTGATCCAGAGTTGGCACAAGCTATTTTAGGGAATGATTTGAACAAATTGCAGGAAGTTTTACGATTGCGTCATCACCAAAGAGATGAATTAAAGCGTCAGAAGGAAGAAGAGCTTGCTCTTCTTTATGCTGATCCTTTTGATGTTGAAGCACAAAAGAAGATTGAAGCTGCCATCCGCCAGAAAGGGATTGATGAAAATTGGGCTGCTGCATTAGAACATAATCCTGAAGCTTTTGCTAGAGTGGTCATGTTGTATGTTGATATGGAGGTTAATGGTGTCCCATTGAAGGCATTTGTTGATAGTGGAGCTCAGTCTACCATTATATCAAAAAGCTGTGCTGAGCGTCTTGGATTGTTGAGACTTTTAGATCAGCGTTACAGAGGAATTGCTCATGGAGTTGGCCAGTCAGAAATATTGGGTCGTATACATGTAGCTCCAATCAAGATTGGGAGTATATTTTACCCTTGCTCATTCTTGGTGCTGGATTCTCCCAATATGGAGTTTCTCTTCGGACTGGATATGCTCCGAAAGCACCAGTGTATAATTGATTTGAAAGAAAATGTTTTGCGAGTTGGTGGAGGAGAAGTTTCTGTGCCATTTTTGCAAGAGAAAGACATACCATCTCGGTTTCTAGACGAGGAAAAGTATGCTAAGGAAGCTTCAGGCTCTGGTGGTCAAATTTCATCAGGCAGCAATAATCCATCAACAGGAGGCCACTCTTCTGGTGGAGCTTCTGGTGATAAGGCTAAGGATTCTGAGTTTGAAGCCAAAGTTGCAAAGCTTGTTGAATTGGGATTTGAAAGAAATGCAGTTATACAAGCTCTTCAATTATTCAATGGAAATGAAGAACAGGCAGCTGGGTTTCTTTTTGGGGGCTAG

>Glyma.08g337500.3 sequence-type=CDS polypeptide=Glyma.08g337500.3.p locus=Glyma.08g337500 ID=Glyma.08g337500.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGATGGTATCTGGTGCTGGCGCTGGTGCTGCTGCTTCTAGTGGATCTACCAATGATTTGAGCTTAAATACTGATGGATCTGCTGTCAACCCTGGTGCTTTCCAGCAGCACATTAGACGTGATTCTAATTTGATGGGTCAGCTCTTTCAGAGTGATCCAGAGTTGGCACAAGCTATTTTAGGGAATGATTTGAACAAATTGCAGGAAGTTTTACGATTGCGTCATCACCAAAGAGATGAATTAAAGCGTCAGAAGGAAGAAGAGCTTGCTCTTCTTTATGCTGATCCTTTTGATGTTGAAGCACAAAAGAAGATTGAAGCTGCCATCCGCCAGAAAGGGATTGATGAAAATTGGGCTGCTGCATTAGAACATAATCCTGAAGCTTTTGCTAGAGTGGTCATGTTGTATGTTGATATGGAGGTTAATGGTGTCCCATTGAAGGCATTTGTTGATAGTGGAGCTCAGTCTACCATTATATCAAAAAGCTGTGCTGAGCGTCTTGGATTGTTGAGACTTTTAGATCAGCGTTACAGAGGAATTGCTCATGGAGTTGGCCAGTCAGAAATATTGGGTCGTATACATGTAGCTCCAATCAAGATTGGGAGTATATTTTACCCTTGCTCATTCTTGGTGCTGGATTCTCCCAATATGGAGTTTCTCTTCGGACTGGATATGCTCCGAAAGCACCAGTGTATAATTGATTTGAAAGAAAATGTTTTGCGAGTTGGTGGAGGAGAAGTTTCTGTGCCATTTTTGCAAGAGAAAGACATACCATCTCGGTTTCTAGACGAGGAAAAGTATGCTAAGGAAGCTTCAGGCTCTGGTGGTCAAATTTCATCAGGCAGCAATAATCCATCAACAGGAGGCCACTCTTCTGGTGGAGCTTCTGGTGATAAGGCTAAGGATTCTGAGTTTGAAGCCAAAGTTGCAAAGCTTGTTGAATTGGGATTTGAAAGAAATGCAGTTATACAAGCTCTTCAATTATTCAATGGAAATGAAGAACAGGCAGCTGGGTTTCTTTTTGGGGGCTAG
Predicted protein sequences of Glyma.08g337500
>Glyma.08g337500.1.p sequence-type=predicted peptide transcript=Glyma.08g337500.1 locus=Glyma.08g337500 ID=Glyma.08g337500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MKITVMTADEQIITLDVDPHESVENVKALLEVETSVALQQQQLLFNGKEVRNSEKLSALGVKDDDLLMMVSGAGAGAAASSGSTNDLSLNTDGSAVNPGAFQQHIRRDSNLMGQLFQSDPELAQAILGNDLNKLQEVLRLRHHQRDELKRQKEEELALLYADPFDVEAQKKIEAAIRQKGIDENWAAALEHNPEAFARVVMLYVDMEVNGVPLKAFVDSGAQSTIISKSCAERLGLLRLLDQRYRGIAHGVGQSEILGRIHVAPIKIGSIFYPCSFLVLDSPNMEFLFGLDMLRKHQCIIDLKENVLRVGGGEVSVPFLQEKDIPSRFLDEEKYAKEASGSGGQISSGSNNPSTGGHSSGGASGDKAKDSEFEAKVAKLVELGFERNAVIQALQLFNGNEEQAAGFLFGG*

>Glyma.08g337500.2.p sequence-type=predicted peptide transcript=Glyma.08g337500.2 locus=Glyma.08g337500 ID=Glyma.08g337500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MKITVMTADEQIITLDVDPHESVENVKALLEVETSVALQQQQLLFNGKEVRNSEKLSALGVKDDDLLMMVSGAGAGAAASSGSTNDLSLNTDGSAVNPGAFQQHIRRDSNLMGQLFQSDPELAQAILGNDLNKLQEVLRLRHHQRDELKRQKEEELALLYADPFDVEAQKKIEAAIRQKGIDENWAAALEHNPEAFARVVMLYVDMEVNGVPLKAFVDSGAQSTIISKSCAERLGLLRLLDQRYRGIAHGVGQSEILGRIHVAPIKIGSIFYPCSFLVLDSPNMEFLFGLDMLRKHQCIIDLKENVLRVGGGEVSVPFLQEKDIPSRFLDEEKYAKEASGSGGQISSGSNNPSTGGHSSGGASGDKAKDSEFEAKVAKLVELGFERNAVIQALQLFNGNEEQAAGFLFGG*

>Glyma.08g337500.3.p sequence-type=predicted peptide transcript=Glyma.08g337500.3 locus=Glyma.08g337500 ID=Glyma.08g337500.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MMVSGAGAGAAASSGSTNDLSLNTDGSAVNPGAFQQHIRRDSNLMGQLFQSDPELAQAILGNDLNKLQEVLRLRHHQRDELKRQKEEELALLYADPFDVEAQKKIEAAIRQKGIDENWAAALEHNPEAFARVVMLYVDMEVNGVPLKAFVDSGAQSTIISKSCAERLGLLRLLDQRYRGIAHGVGQSEILGRIHVAPIKIGSIFYPCSFLVLDSPNMEFLFGLDMLRKHQCIIDLKENVLRVGGGEVSVPFLQEKDIPSRFLDEEKYAKEASGSGGQISSGSNNPSTGGHSSGGASGDKAKDSEFEAKVAKLVELGFERNAVIQALQLFNGNEEQAAGFLFGG*






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