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Report for Sequence Feature Glyma.08g335900

Feature Type:gene_model
Chromosome:Gm08
Start:45297319
stop:45301337
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.08g335900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G12840.2AT nuclear factor Y, subunit A1 JGI N/AIEA
GO:0006355GO-bp regulation of transcription, DNA-templated EnsemblGenomesN/AIEA
GO:0006355GO-bp regulation of transcription, DNA-templated JGI N/AIEA
GO:0016602GO-cc CCAAT-binding factor complex EnsemblGenomesN/AIEA
GO:0003677GO-mf DNA binding EnsemblGenomesN/AIEA
GO:0003700GO-mf DNA binding transcription factor activity EnsemblGenomesN/AIEA
GO:0003700GO-mf sequence-specific DNA binding transcription factor activity JGI N/AIEA
KOG1561 KOG CCAAT-binding factor, subunit B (HAP2) JGI N/AIEA
PTHR12632Panther TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED JGI N/AIEA
PTHR12632:SF5Panther JGI N/AIEA
PF02045PFAM CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B JGI N/AIEA

Proteins Associated with Glyma.08g335900
LocusGene SymbolProtein Name
NF-YA07 nuclear transcription factor Y subunit A-7

Expression Patterns of Glyma.08g335900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.08g335900 not represented in the dataset
Glyma.08g335900 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.08g335900
ParalogEvidenceComments
Glyma.18g071000 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.08g335900 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma08g45030 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.08g335900
>Glyma.08g335900.2 sequence-type=transcript locus=Glyma.08g335900 ID=Glyma.08g335900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AAAAAACTTAAAAAGTTTCAATTTTATTTAATTTTCTCTATTATTATTGGTGCTGTTACTATTAATTAATTTCTGGGGCTAAATTGAGAGAACTGTGTGTGTGTGTgagaaaaagagagagagtaagagagaaaaagagGAATCAAGATAGCTCCTTTGAATTTTCTATCAGAATCTGAGGACCCAAAATCTAGGGTTTTCTGTTCTTCTCTGGGGATCTGAAGACATGCAGTCCAAGTCTGAAACTGCAAATCGGCTGAGGTCAGATCCTCATTCCTTTCAACCTGGCGGTGTTTATTCTGAGCCTTGGTGGCGTGGTATTGGGTACAATCCCATGGCCCAAACAATGGCTGGGGCAAATGCGTCCAATTCGTCGTCTCTTGAATGCCCTAATGGTGATTCTGAATCCAATGAAGAGGGCCAGTCTTTGTCCAATAGCGGGATGAATGAGGAAGATGATGATGCCACTAAGGATTCGAAGCCTGCTGCTCCTAATGAAACAGGAAATTATGAGCAAGAACAGCAAGGGATGCAGCATACTGCATCATCTCCACCATCCATGCGTGAAGAATGCCTTACTCAGACACCACAGCTGGAACTTGTTGGTCATTCAATTGCATGTTCTACAAATCCTTACCAGGATCCGTATTATGGGGGCATGATGGCAGCTTATGGTCACCAACAGTTGGGATATGCTCCTTTTATAGGAATGCCTCATGCCAGAATGCCTTTGCCCCTTGAGATGGCTCAAGAACCTGTGTATGTGAATGCCAAACAGTACCAAGGAATTCTGAGGCGAAGACAGGCTCGTGCTAAAGCTGAGCTTGAAAGGAAGCTCATAAAATCTAGAAAGCCATATCTTCATGAATCTAGGCATCAGCATGCTATGAGAAGGGCAAGGGGTACCGGAGGACGATTTGCAAAGAAAACTGACGGTGAGGGCTCAAACCACTTAGGCAAGGAAAAGGATAATGGTACTGATTCTGTCCAATCAATTAGTTCATCTGGTTCTGAACCTTTGCATTCTGACTCTGCCGAAACCTGGAATTCTCCTAACATGCAACAAGATGCAAGAGCATCAAAAGTGCACAACAGCAGGTTCGAAGCACCCAGTTACCAAAATGGCAGTGGCTCCTACCATAACCATAATGGATTGCAATCTTCAGTGTACCATTCATCCTCAGGTGAAAGAGTGGAGGAAAGGGACTGTTCAGGTCAGCAGCTGAACCACAATTGATGGGGGGTTAGAGGCCGAGGTTGGTTTGTATCCTAGTGACATTTGTTTTTTAGTGGTTAGGCAACTTCAACCAACATGGAATGGAAGGATGGTCAGAGGTCAGAAGATTATGGAGTATGGAGAAACAAAAACTCTTGGTGTACCAACACTCGTTTGACTGGTTTATCTTTTGTGTAGTTCAACCGGTTGTTAATGTTAACGTAAGACATCATAGAATAATGAAACATGCTATTACATCATTTGTTGCCCTTTGTTATTTCAGTTTTTAGTATTTTATTGGTTCTTAAGAAAATTAATTTTCCATTGTCTGTAGCAAAGATGAAAAGGAAAAGTTTTCTCGTCCATGACTTTGTTTGCCTTGTTGAAGTGGCCATGGGACAATCGGCCGAATATTCTTGTATTATAAGTGAGTAGGTATAAAGGAAGAATAAAGATGCTATTATCT
Coding sequences of Glyma.08g335900
>Glyma.08g335900.1 sequence-type=CDS polypeptide=Glyma.08g335900.1.p locus=Glyma.08g335900 ID=Glyma.08g335900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCAGTCCAAGTCTGAAACTGCAAATCGGCTGAGGTCAGATCCTCATTCCTTTCAACCTGGCGGTGTTTATTCTGAGCCTTGGTGGCGTGGTATTGGGTACAATCCCATGGCCCAAACAATGGCTGGGGCAAATGCGTCCAATTCGTCGTCTCTTGAATGCCCTAATGGTGATTCTGAATCCAATGAAGAGGGCCAGTCTTTGTCCAATAGCGGGATGAATGAGGAAGATGATGATGCCACTAAGGATTCGAAGCCTGCTGCTCCTAATGAAACAGGAAATTATGAGCAAGAACAGCAAGGGATGCAGCATACTGCATCATCTCCACCATCCATGCGTGAAGAATGCCTTACTCAGACACCACAGCTGGAACTTGTTGGTCATTCAATTGCATGTTCTACAAATCCTTACCAGGATCCGTATTATGGGGGCATGATGGCAGCTTATGGTCACCAACAGTTGGGATATGCTCCTTTTATAGGAATGCCTCATGCCAGAATGCCTTTGCCCCTTGAGATGGCTCAAGAACCTGTGTATGTGAATGCCAAACAGTACCAAGGAATTCTGAGGCGAAGACAGGCTCGTGCTAAAGCTGAGCTTGAAAGGAAGCTCATAAAATCTAGAAAGCCATATCTTCATGAATCTAGGCATCAGCATGCTATGAGAAGGGCAAGGGGTACCGGAGGACGATTTGCAAAGAAAACTGACGGTGAGGGCTCAAACCACTTAGGCAAGGAAAAGGATAATGGTACTGATTCTGTCCAATCAATTAGTTCATCTGGTTCTGAACCTTTGCATTCTGACTCTGCCGAAACCTGGAATTCTCCTAACATGCAACAAGATGCAAGAGCATCAAAAGTGCACAACAGCAGGTTCGAAGCACCCAGTTACCAAAATGGCAGTGGCTCCTACCATAACCATAATGGATTGCAATCTTCAGTGTACCATTCATCCTCAGGTGAAAGAGTGGAGGAAAGGGACTGTTCAGGTCAGCAGCTGAACCACAATTGA

>Glyma.08g335900.2 sequence-type=CDS polypeptide=Glyma.08g335900.2.p locus=Glyma.08g335900 ID=Glyma.08g335900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCAGTCCAAGTCTGAAACTGCAAATCGGCTGAGGTCAGATCCTCATTCCTTTCAACCTGGCGGTGTTTATTCTGAGCCTTGGTGGCGTGGTATTGGGTACAATCCCATGGCCCAAACAATGGCTGGGGCAAATGCGTCCAATTCGTCGTCTCTTGAATGCCCTAATGGTGATTCTGAATCCAATGAAGAGGGCCAGTCTTTGTCCAATAGCGGGATGAATGAGGAAGATGATGATGCCACTAAGGATTCGAAGCCTGCTGCTCCTAATGAAACAGGAAATTATGAGCAAGAACAGCAAGGGATGCAGCATACTGCATCATCTCCACCATCCATGCGTGAAGAATGCCTTACTCAGACACCACAGCTGGAACTTGTTGGTCATTCAATTGCATGTTCTACAAATCCTTACCAGGATCCGTATTATGGGGGCATGATGGCAGCTTATGGTCACCAACAGTTGGGATATGCTCCTTTTATAGGAATGCCTCATGCCAGAATGCCTTTGCCCCTTGAGATGGCTCAAGAACCTGTGTATGTGAATGCCAAACAGTACCAAGGAATTCTGAGGCGAAGACAGGCTCGTGCTAAAGCTGAGCTTGAAAGGAAGCTCATAAAATCTAGAAAGCCATATCTTCATGAATCTAGGCATCAGCATGCTATGAGAAGGGCAAGGGGTACCGGAGGACGATTTGCAAAGAAAACTGACGGTGAGGGCTCAAACCACTTAGGCAAGGAAAAGGATAATGGTACTGATTCTGTCCAATCAATTAGTTCATCTGGTTCTGAACCTTTGCATTCTGACTCTGCCGAAACCTGGAATTCTCCTAACATGCAACAAGATGCAAGAGCATCAAAAGTGCACAACAGCAGGTTCGAAGCACCCAGTTACCAAAATGGCAGTGGCTCCTACCATAACCATAATGGATTGCAATCTTCAGTGTACCATTCATCCTCAGGTGAAAGAGTGGAGGAAAGGGACTGTTCAGGTCAGCAGCTGAACCACAATTGA
Predicted protein sequences of Glyma.08g335900
>Glyma.08g335900.1.p sequence-type=predicted peptide transcript=Glyma.08g335900.1 locus=Glyma.08g335900 ID=Glyma.08g335900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MQSKSETANRLRSDPHSFQPGGVYSEPWWRGIGYNPMAQTMAGANASNSSSLECPNGDSESNEEGQSLSNSGMNEEDDDATKDSKPAAPNETGNYEQEQQGMQHTASSPPSMREECLTQTPQLELVGHSIACSTNPYQDPYYGGMMAAYGHQQLGYAPFIGMPHARMPLPLEMAQEPVYVNAKQYQGILRRRQARAKAELERKLIKSRKPYLHESRHQHAMRRARGTGGRFAKKTDGEGSNHLGKEKDNGTDSVQSISSSGSEPLHSDSAETWNSPNMQQDARASKVHNSRFEAPSYQNGSGSYHNHNGLQSSVYHSSSGERVEERDCSGQQLNHN*

>Glyma.08g335900.2.p sequence-type=predicted peptide transcript=Glyma.08g335900.2 locus=Glyma.08g335900 ID=Glyma.08g335900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MQSKSETANRLRSDPHSFQPGGVYSEPWWRGIGYNPMAQTMAGANASNSSSLECPNGDSESNEEGQSLSNSGMNEEDDDATKDSKPAAPNETGNYEQEQQGMQHTASSPPSMREECLTQTPQLELVGHSIACSTNPYQDPYYGGMMAAYGHQQLGYAPFIGMPHARMPLPLEMAQEPVYVNAKQYQGILRRRQARAKAELERKLIKSRKPYLHESRHQHAMRRARGTGGRFAKKTDGEGSNHLGKEKDNGTDSVQSISSSGSEPLHSDSAETWNSPNMQQDARASKVHNSRFEAPSYQNGSGSYHNHNGLQSSVYHSSSGERVEERDCSGQQLNHN*






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