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Report for Sequence Feature Glyma.08g335300

Feature Type:gene_model
Chromosome:Gm08
Start:45230200
stop:45233431
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.08g335300
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G67630.1AT P-loop containing nucleoside triphosphate hydrolases superfamily protein JGI N/AIEA
GO:0000492GO-bp box C/D snoRNP assembly EnsemblGenomesN/AIEA
GO:0006260GO-bp DNA replication JGI N/AIEA
GO:0006281GO-bp DNA repair JGI N/AIEA
GO:0006310GO-bp DNA recombination JGI N/AIEA
GO:0006338GO-bp chromatin remodeling EnsemblGenomesN/AIEA
GO:0006351GO-bp transcription, DNA-templated EnsemblGenomesN/AIEA
GO:0006355GO-bp regulation of transcription, DNA-templated EnsemblGenomesN/AIEA
GO:0006357GO-bp regulation of transcription by RNA polymerase II EnsemblGenomesN/AIEA
GO:0016573GO-bp histone acetylation EnsemblGenomesN/AIEA
GO:0032508GO-bp DNA duplex unwinding EnsemblGenomesN/AIEA
GO:0000812GO-cc Swr1 complex EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0031011GO-cc Ino80 complex EnsemblGenomesN/AIEA
GO:0035267GO-cc NuA4 histone acetyltransferase complex EnsemblGenomesN/AIEA
GO:0097255GO-cc R2TP complex EnsemblGenomesN/AIEA
GO:0000166GO-mf nucleotide binding EnsemblGenomesN/AIEA
GO:0003678GO-mf DNA helicase activity EnsemblGenomesN/AIEA
GO:0003678GO-mf DNA helicase activity JGI N/AIEA
GO:0004003GO-mf ATP-dependent DNA helicase activity EnsemblGenomesN/AIEA
GO:0004386GO-mf helicase activity EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding JGI N/AIEA
GO:0009378GO-mf four-way junction helicase activity JGI N/AIEA
GO:0016787GO-mf hydrolase activity EnsemblGenomesN/AIEA
GO:0043141GO-mf ATP-dependent 5'-3' DNA helicase activity EnsemblGenomesN/AIEA
KOG2680 KOG DNA helicase TIP49, TBP-interacting protein JGI N/AIEA
PTHR11093Panther RUVB-RELATED REPTIN AND PONTIN JGI N/AIEA
PF06068PFAM TIP49 C-terminus JGI N/AIEA

Expression Patterns of Glyma.08g335300
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.08g335300
ParalogEvidenceComments
Glyma.18g070300 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.08g335300 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma08g45090 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.08g335300
>Glyma.08g335300.1 sequence-type=CDS polypeptide=Glyma.08g335300.1.p locus=Glyma.08g335300 ID=Glyma.08g335300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGGAGCTGAAACTCTCTGAGAGCCGCGATCTGACCCGCATAGAGCGCGTGGGCGCGCACTCCCACATCCGCGGCCTTGGCCTGGACTCCTCCCTGGAGCCGCGCGCCGTCTCGGACGGCATGGTTGGGCAAACCGCCGCCCGCAAGGCCGCCGGCGTGATCCTCCAGATGATAAAAGACGGCAAAATCGCCGGCCGTGCAGTCCTCCTGGCCGGCCAGCCCGGCACCGGCAAGACCGCCATCGCCATGGGCATGGCCAAGTCCCTCGGCCTCGAAACCCCCTTCGCCATGATCGCCGCCAGCGAAATCTTCTCCCTTGAGATGTCGAAAACCGAAGCCCTCACCCAGGCCTTCCGCAAGGCCATCGGCGTCCGCATCAAGGAAGAAACCGAGGTCATCGAGGGCGAAGTCGTCGAGGTTCAAATCGACCGTCCCGCGGTGGCTGGCGCCGCCGCGAAGACCGGGAAGCTGACGCTGAAGTCGACCGAGATGGAGACGGTTTACGACCTCGGCGCGAAGATGATTGAAGCGCTGGGGAAGGAGAAGGTGAGCAGCGGCGATGTTATTGCGATTGATAAGGCGTCCGGGAAGATTACGAAGCTCGGACGATCGTTTTCGCGGTCGAGGGACTTTGACGCTATGGGGCCGCAGGTGAAGTTCGTGCAGTGTCCCGATGGGGAGTTGCAGAAGAGGAAGGAGGTCGTGCATTGCGTTACGCTTCATGAGATTGATGTTATTAATAGCAGAACACAGGGATTTCTGGCTCTTTTCACAGGGGATACGGGTGAAATTCGTGCTGAGGTCAGAGAGCAAATTGACACCAAAGTGGCAGAGTGGAGAGAAGAAGGAAAGGCAGAGATTGTGCCTGGTGTTCTTTTCATTGATGAGGTGCACATGCTTGACATAGAGTGCTTTTCTTTCCTTAATCGGGCTCTGGAGAATGAGATGGCTCCCATATTAGTTGTTGCTACCAACAGAGGCATCACAACTATCAGGGGAACAAATTACAAATCCCCACATGGGATTCCCATTGATCTGCTTGACCGACTTCTCATCATCTCTACCCAACCTTACACAGAGGATGAAATTCGCAAGATTCTGGATATCAGATGCCAAGAGGAAGACGTAGACATGAGTGAAGGTGCAAAGTGTTTGTTAACCAAAATAGGTGTAGAAACATCTTTGAGATATGCTATTCATCTAATCACAGCAGCTGCATTGGCATGCCAAAAGCGAAAGGGGAAGACAGTGGAGTTGGATGATATAAATCGGGTTTACAATCTGTTTTTGGATGTCAAAAGATCAACACAGTACCTAATGGAGTACCAAAGTCAGTACATGTTCAATGAAACAGGAGAAGCTGATGAAGATGAAACCAATGCCATGGTCTCTTAG
Predicted protein sequences of Glyma.08g335300
>Glyma.08g335300.1.p sequence-type=predicted peptide transcript=Glyma.08g335300.1 locus=Glyma.08g335300 ID=Glyma.08g335300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAELKLSESRDLTRIERVGAHSHIRGLGLDSSLEPRAVSDGMVGQTAARKAAGVILQMIKDGKIAGRAVLLAGQPGTGKTAIAMGMAKSLGLETPFAMIAASEIFSLEMSKTEALTQAFRKAIGVRIKEETEVIEGEVVEVQIDRPAVAGAAAKTGKLTLKSTEMETVYDLGAKMIEALGKEKVSSGDVIAIDKASGKITKLGRSFSRSRDFDAMGPQVKFVQCPDGELQKRKEVVHCVTLHEIDVINSRTQGFLALFTGDTGEIRAEVREQIDTKVAEWREEGKAEIVPGVLFIDEVHMLDIECFSFLNRALENEMAPILVVATNRGITTIRGTNYKSPHGIPIDLLDRLLIISTQPYTEDEIRKILDIRCQEEDVDMSEGAKCLLTKIGVETSLRYAIHLITAAALACQKRKGKTVELDDINRVYNLFLDVKRSTQYLMEYQSQYMFNETGEADEDETNAMVS*






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