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Report for Sequence Feature Glyma.08g331900

Feature Type:gene_model
Chromosome:Gm08
Start:44929802
stop:44934573
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.08g331900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G60620.1AT RNA polymerase I subunit 43 JGI N/AIEA
GO:0006351GO-bp transcription, DNA-templated EnsemblGenomesN/AIEA
GO:0006351GO-bp transcription, DNA-templated JGI N/AIEA
GO:0006360GO-bp transcription by RNA polymerase I EnsemblGenomesN/AIEA
GO:0006383GO-bp transcription by RNA polymerase III EnsemblGenomesN/AIEA
GO:0005666GO-cc DNA-directed RNA polymerase III complex EnsemblGenomesN/AIEA
GO:0005736GO-cc DNA-directed RNA polymerase I complex EnsemblGenomesN/AIEA
GO:0001054GO-mf RNA polymerase I activity EnsemblGenomesN/AIEA
GO:0001056GO-mf RNA polymerase III activity EnsemblGenomesN/AIEA
GO:0003677GO-mf DNA binding EnsemblGenomesN/AIEA
GO:0003899GO-mf DNA-directed 5'-3' RNA polymerase activity EnsemblGenomesN/AIEA
GO:0003899GO-mf DNA-directed RNA polymerase activity JGI N/AIEA
GO:0046983GO-mf protein dimerization activity EnsemblGenomesN/AIEA
GO:0046983GO-mf protein dimerization activity JGI N/AIEA
KOG1521 KOG RNA polymerase I and III, subunit RPA40/RPC40 JGI N/AIEA
PTHR11800Panther DNA-DIRECTED RNA POLYMERASE JGI N/AIEA
PTHR11800:SF13Panther DNA-DIRECTED RNA POLYMERASES I AND III SUBUNIT RPAC1 JGI N/AIEA
PF01000PFAM RNA polymerase Rpb3/RpoA insert domain JGI N/AIEA
PF01193PFAM RNA polymerase Rpb3/Rpb11 dimerisation domain JGI N/AIEA

Expression Patterns of Glyma.08g331900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.08g331900 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma08g44480 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.08g331900
>Glyma.08g331900.1 sequence-type=CDS polypeptide=Glyma.08g331900.1.p locus=Glyma.08g331900 ID=Glyma.08g331900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCTTCGTCGTCATCGTCGTCGTCGTCGTCGGAAGATGAATCTATGTCGGAACAGAGCAATGAATTAGGACTTGATTTCATCTTGAGCTTGGACAATGTTCCATCAAAGCTCCCTCCACACCTCGAACTCTTTAAAACACGTGTTCTTTGCAACAACGATGCTCCTGTGCACACTGATACTGTTCAATATTCCGGTGCCTATGCTATTATGGGAGTTGATAATAGTGTGCGGTTGGATAGCTTCTGTGAAAACTTTAAGGTTGAAGTGAAGCGGCTGACGGATAGCGATATTGAATTTGATATGATTGGAATCGATCCGGCAATTGCCAATGCATTTCGAAGAATCCTTATAGCAGAGGTTCCAACAATGGCTATTGAAAGAGTATATATCGCAAACAATACATCGGTTGTACAAGATGAAGTTCTTTCCCATAGATTGGGTCTCATTCCAATTCGTGCTGATCCCAGGTTATTTGAATATCCAGAAAATGCAGGAGATGACAAAAATGAAAAGAACACCATTGTCTTCAAGCTACATGTTCGTTGTCAAGTGGGTCAACCTCGTATTACTGTGAAATCAGATAAACTGAAGTGGTTACCTAATGGGAGTGAGCTTCCCTGTGAAGATGTCAAACCAAATGCAGGTTCAAAACCAAAAACATTTACATCTTTTACTTGCAGCCAAGATTCACTTCCTGAATTTTCCAACAATTCAATTGGTCTTACATATTCGGATATTATACTGGCTAAACTTGGACCTGGTCAGGAAATTGAACTTGAAGCGCATGCAGTTAAAGGCACTGGGAAGACACATGCAAAATGGTCCCCAGTTGCCACCACTTGGTATCGGATGCTTCCGGAGGTTGTACTCTTGAAAGATGTTGAGGATGAGCTGGCTGAAGAATTAAAAAACAAGTGTCCAGTTAATGTGTTTGATATTGAAGACATTGGAAAAGGTAAAAGAAGGGCAAAAGTAGCCAGACCACGGGATTGCACTTTGTGTAGGGAATGCATCAGAGGGGGCAAAGAATGGGAAGATCGTGTATCATTACGCCGTGTTAAAAATCATTTCATTTTTACTATTGAATCAACTGGAGCATTACCCCCTGAAGTGCTGTTTACTGAAGCTGTGAAGATTTTGGAAGATAAATGTGAACGTGTGATTACTGAGCTTTCTTGA
Predicted protein sequences of Glyma.08g331900
>Glyma.08g331900.1.p sequence-type=predicted peptide transcript=Glyma.08g331900.1 locus=Glyma.08g331900 ID=Glyma.08g331900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSSSSSSSSSSEDESMSEQSNELGLDFILSLDNVPSKLPPHLELFKTRVLCNNDAPVHTDTVQYSGAYAIMGVDNSVRLDSFCENFKVEVKRLTDSDIEFDMIGIDPAIANAFRRILIAEVPTMAIERVYIANNTSVVQDEVLSHRLGLIPIRADPRLFEYPENAGDDKNEKNTIVFKLHVRCQVGQPRITVKSDKLKWLPNGSELPCEDVKPNAGSKPKTFTSFTCSQDSLPEFSNNSIGLTYSDIILAKLGPGQEIELEAHAVKGTGKTHAKWSPVATTWYRMLPEVVLLKDVEDELAEELKNKCPVNVFDIEDIGKGKRRAKVARPRDCTLCRECIRGGKEWEDRVSLRRVKNHFIFTIESTGALPPEVLFTEAVKILEDKCERVITELS*






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