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Report for Sequence Feature Glyma.08g321800

Feature Type:gene_model
Chromosome:Gm08
Start:44062797
stop:44064898
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.08g321800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G30050.1AT transducin family protein / WD-40 repeat family protein JGI N/AIEA
GO:0015031GO-bp protein transport EnsemblGenomesN/AIEA
GO:0016192GO-bp vesicle-mediated transport EnsemblGenomesN/AIEA
GO:0090114GO-bp COPII-coated vesicle budding EnsemblGenomesN/AIEA
GO:1904263GO-bp positive regulation of TORC1 signaling EnsemblGenomesN/AIEA
GO:0000139GO-cc Golgi membrane EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0030127GO-cc COPII vesicle coat EnsemblGenomesN/AIEA
GO:0005198GO-mf structural molecule activity EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding JGI N/AIEA
KOG1332 KOG Vesicle coat complex COPII, subunit SEC13 JGI N/AIEA
PTHR11024Panther PROTEIN TRANSPORT PROTEIN SEC13-RELATED JGI N/AIEA
PF00400PFAM WD domain, G-beta repeat JGI N/AIEA

Expression Patterns of Glyma.08g321800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.08g321800
ParalogEvidenceComments
Glyma.18g090700 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.08g321800 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma08g43390 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.08g321800
>Glyma.08g321800.1 sequence-type=CDS polypeptide=Glyma.08g321800.1.p locus=Glyma.08g321800 ID=Glyma.08g321800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCCTTCTCAGAAAGTTGAAACGGGTCATCAAGACACGGTCCATGATGTTGCAATGGATTACTATGGTAAGAGGCTGGCCACGGCTTCATCAGATCACACAATTAAGATAATTGGGGTGAGTAATACGGCCTCTCAGCATCTCGCAACATTGACTGGTCACCAAGGACCTGTTTGGCAAGTGGCGTGGGCTCACCCTAAGTTTGGTTCTCTACTTGCATCGTGTTCCTATGATGGTCGTGTCATTGTTTGGAAGGAGGGCAACCAAAATGAATGGACTCAAGCTCATGTGTTTGATGACCACAAGTCATCTGTGAATTCGGTTGCTTGGGCGCCTCACGAGTTGGGTCTTTGCTTGGCTTGTGGCTCGTCTGATGGGAATATATCTGTTCTGACTGCAAGAGCAGACGGTGGCTGGGACACTGTGAGAATTGATCAGGCTCATCCAGTTGGTGTCACTTCGGTGTCATGGGCGCCATCGATGGCACCCGGAGCCCTTGTCGGTGCAGGGTTGCTTGATCCAGTACAGAAGCTGTGCTCTGGTGGTTGTGATAATACTGTGAAGGTATGGAAGCTAAACAATGGACTCTGGAAGATGGACTGCTTCCCTGCTCTTCAGATGCACACGGATTGGGTTCGAGATGTTGCTTGGGCACCCAATTTAGGGCTCCCTAAATCTACCATTGCTAGCGCATCACAGGACGGTAAAGTGATTATATGGACCGTGGCGAAAGAGGGGGATCAGTGGGAAGGCAAGGTTTTGAATGATTTCAACACCCCTGTTTGGAGGGTCTCATGGTCATTGACAGGAAACATATTGGCTGTGGCTGATGGGAACAACAATGTGACATTGTGGAAGGAAGCAGTTGATGGGGAATGGCAACAGGTGACAACAGTGGAGCCTTAG
Predicted protein sequences of Glyma.08g321800
>Glyma.08g321800.1.p sequence-type=predicted peptide transcript=Glyma.08g321800.1 locus=Glyma.08g321800 ID=Glyma.08g321800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MPSQKVETGHQDTVHDVAMDYYGKRLATASSDHTIKIIGVSNTASQHLATLTGHQGPVWQVAWAHPKFGSLLASCSYDGRVIVWKEGNQNEWTQAHVFDDHKSSVNSVAWAPHELGLCLACGSSDGNISVLTARADGGWDTVRIDQAHPVGVTSVSWAPSMAPGALVGAGLLDPVQKLCSGGCDNTVKVWKLNNGLWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASQDGKVIIWTVAKEGDQWEGKVLNDFNTPVWRVSWSLTGNILAVADGNNNVTLWKEAVDGEWQQVTTVEP*






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