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Report for Sequence Feature Glyma.08g320900

Feature Type:gene_model
Chromosome:Gm08
Start:43982231
stop:43986056
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.08g320900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G19440.1AT NAD(P)-binding Rossmann-fold superfamily protein JGI N/AIEA
GO:0006694GO-bp steroid biosynthetic process EnsemblGenomesN/AIEA
GO:0006694GO-bp steroid biosynthetic process JGI N/AIEA
GO:0055114GO-bp oxidation-reduction process EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process JGI N/AIEA
GO:0003854GO-mf 3-beta-hydroxy-delta5-steroid dehydrogenase activity EnsemblGenomesN/AIEA
GO:0003854GO-mf 3-beta-hydroxy-delta5-steroid dehydrogenase activity JGI N/AIEA
GO:0016616GO-mf oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor EnsemblGenomesN/AIEA
GO:0016616GO-mf oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor JGI N/AIEA
PTHR10366Panther NAD DEPENDENT EPIMERASE/DEHYDRATASE JGI N/AIEA
PTHR10366:SF9Panther JGI N/AIEA
PF01073PFAM 3-beta hydroxysteroid dehydrogenase/isomerase family JGI N/AIEA
GN7V-60927SoyCyc9-rxn cinnamyl-alcohol dehydrogenase Plant Metabolic Network ISS

Expression Patterns of Glyma.08g320900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.08g320900 not represented in the dataset
Glyma.08g320900 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.08g320900 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma08g43313 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.08g320900
>Glyma.08g320900.1 sequence-type=CDS polypeptide=Glyma.08g320900.1.p locus=Glyma.08g320900 ID=Glyma.08g320900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTGTGGTGTGCCAGATGATCCGAAAAAGATAAACCACTTGGTTAGCCTCGATGGTGCTAAGGAGAGGCTGCACCTCTACAAGGCGAATCTTCTCGAAGAAGGTTCCTTTGACTCTGTCTTTCAAGGTTGCCATGCTGTGTTTCACACTGCTTCTCCCTTTTATCACGATGTCAAGGACCCCCAGGCTGAATTGTTAGACCCAGCTTTGAAGGGGACTCTCAATGTTCTGAAGTCGTGTGTGAACTTGCCAACGCTGGAACGTGTCGTTTTAACCTCTTCTGTTGCTGCAGTTGCGTACAACGGAAAGCCTCGTACTCCCGATGTAGTGGTTGATGAGACATGGTTTTCTGACCCGGATTTCTGTAGGGAATCACAGATGTGGTATACACTTTCAAAGACTTTGGCCGAAGATGCCTACTCTATTGTAAATACAATAATTTTATCGTCCATTGTTAGGTCTTTTCTCTTTGTAAACATAAAAAAGTGCAAGGCAACAGGTTTCCTTTAG
Predicted protein sequences of Glyma.08g320900
>Glyma.08g320900.1.p sequence-type=predicted peptide transcript=Glyma.08g320900.1 locus=Glyma.08g320900 ID=Glyma.08g320900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MCGVPDDPKKINHLVSLDGAKERLHLYKANLLEEGSFDSVFQGCHAVFHTASPFYHDVKDPQAELLDPALKGTLNVLKSCVNLPTLERVVLTSSVAAVAYNGKPRTPDVVVDETWFSDPDFCRESQMWYTLSKTLAEDAYSIVNTIILSSIVRSFLFVNIKKCKATGFL*






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