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Report for Sequence Feature Glyma.08g317500

Feature Type:gene_model
Chromosome:Gm08
Start:43703032
stop:43704635
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.08g317500
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G26900.1AT HIS HF JGI N/AIEA
GO:0000105GO-bp histidine biosynthetic process EnsemblGenomesN/AIEA
GO:0000105GO-bp histidine biosynthetic process JGI N/AIEA
GO:0008152GO-bp metabolic process EnsemblGenomesN/AIEA
GO:0008652GO-bp cellular amino acid biosynthetic process EnsemblGenomesN/AIEA
GO:0000107GO-mf imidazoleglycerol-phosphate synthase activity EnsemblGenomesN/AIEA
GO:0003824GO-mf catalytic activity EnsemblGenomesN/AIEA
PTHR21235Panther IMIDAZOLE GLYCEROL PHOSPHATE SYNTHASE SUBUNIT HISF/H (IGP SYNTHASE SUBUNIT HISF/H) JGI N/AIEA
PTHR21235:SF2Panther IMIDAZOLE GLYCEROL PHOSPHATE SYNTHASE HISHF JGI N/AIEA
PF00977PFAM Histidine biosynthesis protein JGI N/AIEA
GLUTAMINDEG-PWYSoyCyc9 L-glutamine degradation I Plant Metabolic Network ISS
HISTSYN-PWYSoyCyc9 L-histidine biosynthesis Plant Metabolic Network ISS
GN7V-66383SoyCyc9-rxn Enzyme name not determined Plant Metabolic Network ISS

Expression Patterns of Glyma.08g317500
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.08g317500 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma08g42940 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.08g317500
>Glyma.08g317500.1 sequence-type=CDS polypeptide=Glyma.08g317500.1.p locus=Glyma.08g317500 ID=Glyma.08g317500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAGAAATTGCAAGAAATTGCAGTGTCCTTGGCGGTTGATTATTTGCTTCCCCCCTTAAAGAAGGCCAGCCAATTGTCTTCCCAATTGAAGGGGAGTAAAATAAGATATATGCCTTCTACCTTGACCCTCAACTTGTTATGTGGATTAATTATCAGTATAGGTATGGGTCAAGGAAAAGGATTTGATGTAGATTTAATTAAGTTGATATCAGATGCTGTAAGTATCCCTGTTATTGCAAGTGGCGGTGCTGGTGCTCCTCAACACTTCTCTGAGGGGAATGATTTTGATTTGTTAACCATAAAACCCTTTGTCTTTAAAAAATACCACAAACAAATATGGGATCATTTGGTGCCTATTCAGTCGGTAAAAGAGCATTTGTTGAAGGAAGGCATAGAAGTTTAA
Predicted protein sequences of Glyma.08g317500
>Glyma.08g317500.1.p sequence-type=predicted peptide transcript=Glyma.08g317500.1 locus=Glyma.08g317500 ID=Glyma.08g317500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEKLQEIAVSLAVDYLLPPLKKASQLSSQLKGSKIRYMPSTLTLNLLCGLIISIGMGQGKGFDVDLIKLISDAVSIPVIASGGAGAPQHFSEGNDFDLLTIKPFVFKKYHKQIWDHLVPIQSVKEHLLKEGIEV*






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