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Report for Sequence Feature Glyma.08g316200

Feature Type:gene_model
Chromosome:Gm08
Start:43611374
stop:43617841
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.08g316200
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G20390.1AT endoribonuclease L-PSP family protein JGI N/AIEA
KOG2317 KOG Putative translation initiation inhibitor UK114/IBM1 JGI N/AIEA
PTHR11803Panther TRANSLATION INITIATION INHIBITOR JGI N/AIEA
PF01042PFAM Endoribonuclease L-PSP JGI N/AIEA
PWY-702SoyCyc9 L-methionine biosynthesis II Plant Metabolic Network ISS
PWY-724SoyCyc9 superpathway of L-lysine, L-threonine and L-methionine biosynthesis II Plant Metabolic Network ISS
PWY0-1535SoyCyc9 D-serine degradation Plant Metabolic Network ISS
GN7V-65952SoyCyc9-rxn Enzyme name not determined Plant Metabolic Network ISS

Expression Patterns of Glyma.08g316200
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.08g316200 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma08g42820 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.08g316200
>Glyma.08g316200.2 sequence-type=transcript locus=Glyma.08g316200 ID=Glyma.08g316200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCACAGACAGTGAGTCACTGACAGTGTTTGTGTGTGTCTAAGAGAGAGAGAGATGGCATCGTTTTGTGCTGCAAGGACTTTCAACATTCCGGCGATGAACGCCGGCGTTCTTCGCCGCCGGGCATCGTGGGCCGCCGGAATAGTCGGAGCCTCGGTGGCCGGCGCTGCACTTTTGCGCTCTTGTTCGTCTAAGCGCTCTGCGCCATTCGCTTGCATGAGCCTCTCTACTGATACCAGTTTAAAGGAAGCTGTTCAAACTGAAAAGGCCCCAGCGGCATTGGGGCCATACTCTCAAGCAATCAAAGCCAACAACCTTCTGTTTGTGTCAGGTGTTCTTGGCCTTATTCCTGAGACAGGGAAGTTCATCTCTGATAATGTTGAAGATCAGACAGAGCAGGTTCTCAAAAATATGGGAGAGATCCTAAAATCTGGGGGTGCCAGCTATTCATCAGTTGTTAAGACAACTATTTTGTTGGCTGACTTGAAGGACTTCAAGAAAGTTAATGAGATCTATGCTAAATACTTCCCTTCACCTCCCCCGGCTCGGTCAACCTATCAAGTAGCTGGCTTGCCAATGGATGCCAAGATTGAAATTGAGTGCATAGCCGCACTTTGAGCACCATTCTAATAGTATATATGAGTCTTCAACAAACTCAGGGCATAAAACCAGAGGGATCAGCTTTTGGCTCAACACATTATGGGGCCAAGGATTTGGAGAGTCTACAGAGGAAAGAGAAGAAGAGGGACACATGGCAGAGGAGGCAGTTATGCAAAGTGGAGATTCTGTTGCAGCTGAAGCTATGAT
Coding sequences of Glyma.08g316200
>Glyma.08g316200.1 sequence-type=CDS polypeptide=Glyma.08g316200.1.p locus=Glyma.08g316200 ID=Glyma.08g316200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCATCGTTTTGTGCTGCAAGGACTTTCAACATTCCGGCGATGAACGCCGGCGTTCTTCGCCGCCGGGCATCGTGGGCCGCCGGAATAGTCGGAGCCTCGGTGGCCGGCGCTGCACTTTTGCGCTCTTGTTCGTCTAAGCGCTCTGCGCCATTCGCTTGCATGAGCCTCTCTACTGATACCAGTTTAAAGGAAGCTGTTCAAACTGAAAAGGCCCCAGCGGCATTGGGGCCATACTCTCAAGCAATCAAAGCCAACAACCTTCTGTTTGTGTCAGGTGTTCTTGGCCTTATTCCTGAGACAGGGAAGTTCATCTCTGATAATGTTGAAGATCAGACAGAGCAGGTTCTCAAAAATATGGGAGAGATCCTAAAATCTGGGGGTGCCAGCTATTCATCAGTTGTTAAGACAACTATTTTGTTGGCTGACTTGAAGGACTTCAAGAAAGTTAATGAGATCTATGCTAAATACTTCCCTTCACCTCCCCCGGCTCGGTCAACCTATCAAGTAGCTGGCTTGCCAATGGATGCCAAGATTGAAATTGAGTGCATAGCCGCACTTTGA

>Glyma.08g316200.2 sequence-type=CDS polypeptide=Glyma.08g316200.2.p locus=Glyma.08g316200 ID=Glyma.08g316200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCATCGTTTTGTGCTGCAAGGACTTTCAACATTCCGGCGATGAACGCCGGCGTTCTTCGCCGCCGGGCATCGTGGGCCGCCGGAATAGTCGGAGCCTCGGTGGCCGGCGCTGCACTTTTGCGCTCTTGTTCGTCTAAGCGCTCTGCGCCATTCGCTTGCATGAGCCTCTCTACTGATACCAGTTTAAAGGAAGCTGTTCAAACTGAAAAGGCCCCAGCGGCATTGGGGCCATACTCTCAAGCAATCAAAGCCAACAACCTTCTGTTTGTGTCAGGTGTTCTTGGCCTTATTCCTGAGACAGGGAAGTTCATCTCTGATAATGTTGAAGATCAGACAGAGCAGGTTCTCAAAAATATGGGAGAGATCCTAAAATCTGGGGGTGCCAGCTATTCATCAGTTGTTAAGACAACTATTTTGTTGGCTGACTTGAAGGACTTCAAGAAAGTTAATGAGATCTATGCTAAATACTTCCCTTCACCTCCCCCGGCTCGGTCAACCTATCAAGTAGCTGGCTTGCCAATGGATGCCAAGATTGAAATTGAGTGCATAGCCGCACTTTGA
Predicted protein sequences of Glyma.08g316200
>Glyma.08g316200.1.p sequence-type=predicted peptide transcript=Glyma.08g316200.1 locus=Glyma.08g316200 ID=Glyma.08g316200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MASFCAARTFNIPAMNAGVLRRRASWAAGIVGASVAGAALLRSCSSKRSAPFACMSLSTDTSLKEAVQTEKAPAALGPYSQAIKANNLLFVSGVLGLIPETGKFISDNVEDQTEQVLKNMGEILKSGGASYSSVVKTTILLADLKDFKKVNEIYAKYFPSPPPARSTYQVAGLPMDAKIEIECIAAL*

>Glyma.08g316200.2.p sequence-type=predicted peptide transcript=Glyma.08g316200.2 locus=Glyma.08g316200 ID=Glyma.08g316200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MASFCAARTFNIPAMNAGVLRRRASWAAGIVGASVAGAALLRSCSSKRSAPFACMSLSTDTSLKEAVQTEKAPAALGPYSQAIKANNLLFVSGVLGLIPETGKFISDNVEDQTEQVLKNMGEILKSGGASYSSVVKTTILLADLKDFKKVNEIYAKYFPSPPPARSTYQVAGLPMDAKIEIECIAAL*






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