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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G27070.1 | AT | tryptophan synthase beta-subunit 2 | JGI | N/A | IEA |
| GO:0000162 | GO-bp | tryptophan biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0006568 | GO-bp | tryptophan metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0008652 | GO-bp | cellular amino acid biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0009073 | GO-bp | aromatic amino acid family biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0005737 | GO-cc | cytoplasm | EnsemblGenomes | N/A | IEA |
| GO:0004834 | GO-mf | tryptophan synthase activity | EnsemblGenomes | N/A | IEA |
| GO:0016829 | GO-mf | lyase activity | EnsemblGenomes | N/A | IEA |
| KOG1395 | KOG | Tryptophan synthase beta chain | JGI | N/A | IEA |
| PTHR10314 | Panther | SER/THR DEHYDRATASE, TRP SYNTHASE | JGI | N/A | IEA |
| PTHR10314:SF3 | Panther | TRYPTOPHAN SYNTHASE | JGI | N/A | IEA |
| PF00291 | PFAM | Pyridoxal-phosphate dependent enzyme | JGI | N/A | IEA |
| TRPSYN-PWY | SoyCyc9 | L-tryptophan biosynthesis | Plant Metabolic Network | ISS | |
| GN7V-56577 | SoyCyc9-rxn | tryptophan synthase (indole-salvaging) | Plant Metabolic Network | ISS |
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Glyma.08g312300 not represented in the dataset |
Glyma.08g312300 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.18g102800 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma02g25300 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.08g312300.1 sequence-type=CDS polypeptide=Glyma.08g312300.1.p locus=Glyma.08g312300 ID=Glyma.08g312300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCTGCTTCAATCCCATTTACAGGTATCAACTCCTCAAGGGTGCTTCCCATTCCTAGAGAACCACACCACCCATTTTCCCATTTGCTCTCAAACATGTCAAAGTTTGCATCTTTGAGAACCCCTTCTTCTTCTTCTGCTTCTTCTTCTTCTTCTTCTGTGTCTTGCTCTCTCACCAAAGACCCTTACTCTGTTGTGCCATTGGAGGAACATAGCAAAATGGATAATGGGTCGGTTCTGCTTCAGAGACCCGATTCGTTTGGGAGGTTTGGCAAGTTTGGAGGGAAGTATGTCCCTGAGACTCTGATGCATGCTCTCACTGAGCTTGAGGCTGCTTTTTATTCCCTCTCTGCTGATGAAGAGTTTCAGAAAGAACTAGCTGGGATTCTAAAAGATTATGTTGGACGGGAGAGTCCTCTTTATTTTGCTGAAAGGTTGACGGAGCATTACAAGAGGCCTAATGGTGAAGGGCCTCACATTTATCTGAAGAGGGAAGATCTCAATCACACCGGGGCTCACAAAATTAACAATGCTGTTGCTCAAGCTTTGCTTGCTAAGAGGTTGGGCAAAAAACGCATTATTGCTGAAACTGGAGCGGGTCAGCATGGAGTTGCCACTGCTACTGTATGTGCTCGATTTGGTTTAGAATGCATTATTTATATGGGCGCACAGGATATGGAAAGGCAGGCTCTCAATGTTTTCAGAATGCGTCTTCTTGGTGCTGAGGTGAGACCCGTCCATTCTGGGACTGCTACACTGAAGGATGCGACATCAGAGGCTATAAGGGACTGGGTAACTAATGTGGAGACAACTCATTATATTTTGGGTTCTGTTGCTGGGCCGCATCCATATCCAATGATGGTAAGAGAGTTTCATGCTGTGATTGGCAAGGAGACCAGAAAGCAAGCTTTGGAAAAGTGGGGAGGGAAACCAGATATTCTGATTGCATGTGTTGGTGGAGGTTCAAACGCCATGGGACTTTTCAATGAATTTGTTGATGACAAAGATGTTAGGCTAATTGGCGTGGAGGCTGCTGGATTTGGCCTGGACAGTGGCAAGCACGCGGCAACGTTAACGAAGGGAGAAGTTGGGGTTTTACATGGAGCTATGAGCTACCTGCTGCAGGATGATGATGGACAAATAGTTGAGCCTCACTCAATTAGTGCAGGCTTGGACTACCCTGGTGTGGGTCCGGAACATAGCTTTTTGAAAGATTTAGGGCGTGCTGAATATCATAGCATCACAGATGAAGAAGCATTGGAAGCTTTTAAGAGAGTTTCGCGACTTGAAGGCATAATTCCAGCTCTGGAAACATCTCATGCGTTGGCATATCTAGAGAAAGTGTGTCCAACCCTTCCTAATGGAGCCAAGGTTGTGGTTAACTTCAGTGGCCGGGGTGATAAGGATGTTCAAACTGCTATCAAGTGCTTGAAGCTTTGA
>Glyma.08g312300.1.p sequence-type=predicted peptide transcript=Glyma.08g312300.1 locus=Glyma.08g312300 ID=Glyma.08g312300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MAASIPFTGINSSRVLPIPREPHHPFSHLLSNMSKFASLRTPSSSSASSSSSSVSCSLTKDPYSVVPLEEHSKMDNGSVLLQRPDSFGRFGKFGGKYVPETLMHALTELEAAFYSLSADEEFQKELAGILKDYVGRESPLYFAERLTEHYKRPNGEGPHIYLKREDLNHTGAHKINNAVAQALLAKRLGKKRIIAETGAGQHGVATATVCARFGLECIIYMGAQDMERQALNVFRMRLLGAEVRPVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVREFHAVIGKETRKQALEKWGGKPDILIACVGGGSNAMGLFNEFVDDKDVRLIGVEAAGFGLDSGKHAATLTKGEVGVLHGAMSYLLQDDDGQIVEPHSISAGLDYPGVGPEHSFLKDLGRAEYHSITDEEALEAFKRVSRLEGIIPALETSHALAYLEKVCPTLPNGAKVVVNFSGRGDKDVQTAIKCLKL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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