|
A previous version of this gene model can be found here:
Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
---|---|---|---|---|---|
AT2G31300.1 | AT | actin-related protein C1B | JGI | N/A | IEA |
GO:0030833 | GO-bp | regulation of actin filament polymerization | EnsemblGenomes | N/A | IEA |
GO:0034314 | GO-bp | Arp2/3 complex-mediated actin nucleation | EnsemblGenomes | N/A | IEA |
GO:0005737 | GO-cc | cytoplasm | EnsemblGenomes | N/A | IEA |
GO:0005856 | GO-cc | cytoskeleton | EnsemblGenomes | N/A | IEA |
GO:0005885 | GO-cc | Arp2/3 protein complex | EnsemblGenomes | N/A | IEA |
GO:0015629 | GO-cc | actin cytoskeleton | EnsemblGenomes | N/A | IEA |
GO:0003779 | GO-mf | actin binding | EnsemblGenomes | N/A | IEA |
GO:0005515 | GO-mf | protein binding | EnsemblGenomes | N/A | IEA |
GO:0005515 | GO-mf | protein binding | JGI | N/A | IEA |
GO:0051015 | GO-mf | actin filament binding | EnsemblGenomes | N/A | IEA |
KOG1523 | KOG | Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC | JGI | N/A | IEA |
PTHR10709 | Panther | ACTIN-RELATED PROTEIN 2/3 COMPLEX SUBUNIT 1 | JGI | N/A | IEA |
PF00400 | PFAM | WD domain, G-beta repeat | JGI | N/A | IEA |
Glyma.08g311700 not represented in the dataset |
Glyma.08g311700 not represented in the dataset |
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
Paralog | Evidence | Comments |
---|---|---|
Glyma.18g103800 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
Corresponding Name | Annotation Version | Evidence | Comments |
---|---|---|---|
Glyma08g42471 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.08g311700.1 sequence-type=CDS polypeptide=Glyma.08g311700.1.p locus=Glyma.08g311700 ID=Glyma.08g311700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCGGTGATGGCGGTTCATCAATTCGCGCAATGCATCACTTGCCACGCTTGGAGCCCTGACCAATCCATGGTTGCTTTATGCCCAAACAATAATGAAGTGCACATCTATAGGTTGGTTGAAGACAAATGGGAAAAGGTGTATGTTCTTCAAAAGCATGACCAGGTAATTTCTGGGATAGACTGGAGTGCAAGATCAAATAGAATAGTTACTGCATCCCATGATCGGAATTCATATGTCTGGAACCTTGAAGGATCAGAATGGGTGCCAACTCTTGTTATCCTTAGACTAAACCGTGCTGCCCTTTGTGTTGAATGGAGTCCAAAAGAAAACAAATTTGCAGTGGGAAGTGGAGCCAAAACTGTTTGTATATGCTACTATGAGCAGGAGAACAACTGGTGGGTCAGCAAACTTATCAGGAAAAGACATGATTCTTCCGTGACAAGTGTTTCTTGGCATCCTGATAATATTCTTCTTGCTACAACATCCACAGATGGGAAATGCCGAGTATTCTCCACTTTTATAAAAGGCGTTGATGCAAAGGATTCGAAAAAGGGTACTTCATCAGATTCAAAATTTGGAGAGCTGATTGTTCAGCTTGATCTCTCATCGTCTTGGACATTCGGAGTCAAGTGGTCACCAAGTGGCAATACTCTAGCGTATGTAGGTCATAATTCTATGATATATTTTGTCGATGATGTTGGTCCTTCTCCTTTGGCCCAAAATGTTGTGTTCCGTGATTTGCCGCTCCATGATGTATTATTTGCCTCTGAGAGAAACGTGATAGGTGTGGGATTTGATTGTAACCCAATGGTTTTTGCCGCAGATGAAAGGGGAATTTGGAGTTTTGTCAGATATTTGGGAGAACGGAAAGCAGTATCTTCTGGATCAAGATATGGCTCACAGTTCTCTGAAGCATTTGGAAAGTTTTATGGCCAATCAAAGCATGGAGTGAGCAATGATGCAGTTGAAACTTCAAGAACTCGTGGAACTGTTCACGAAAACTGTATAAATTGTATTATGCCTCTTGGGGATCATGGCACATTGGTAAGGCGTTTCAGTACATCAGGATTGGATGGAAGAATTGTTGTATGGGATTTGGAAAACGAGCAAGACCTGTTGGAATTATAA
>Glyma.08g311700.1.p sequence-type=predicted peptide transcript=Glyma.08g311700.1 locus=Glyma.08g311700 ID=Glyma.08g311700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MAVMAVHQFAQCITCHAWSPDQSMVALCPNNNEVHIYRLVEDKWEKVYVLQKHDQVISGIDWSARSNRIVTASHDRNSYVWNLEGSEWVPTLVILRLNRAALCVEWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVSWHPDNILLATTSTDGKCRVFSTFIKGVDAKDSKKGTSSDSKFGELIVQLDLSSSWTFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVVFRDLPLHDVLFASERNVIGVGFDCNPMVFAADERGIWSFVRYLGERKAVSSGSRYGSQFSEAFGKFYGQSKHGVSNDAVETSRTRGTVHENCINCIMPLGDHGTLVRRFSTSGLDGRIVVWDLENEQDLLEL*
Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||