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Report for Sequence Feature Glyma.08g311400

Feature Type:gene_model
Chromosome:Gm08
Start:43070284
stop:43077054
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.08g311400
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G25660.1AT Amidase family protein JGI N/AIEA
GO:0006412GO-bp translation EnsemblGenomesN/AIEA
GO:0032543GO-bp mitochondrial translation EnsemblGenomesN/AIEA
GO:0070681GO-bp glutaminyl-tRNAGln biosynthesis via transamidation EnsemblGenomesN/AIEA
GO:0005739GO-cc mitochondrion EnsemblGenomesN/AIEA
GO:0009507GO-cc chloroplast EnsemblGenomesN/AIEA
GO:0009536GO-cc plastid EnsemblGenomesN/AIEA
GO:0009570GO-cc chloroplast stroma EnsemblGenomesN/AIEA
GO:0030956GO-cc glutamyl-tRNA(Gln) amidotransferase complex EnsemblGenomesN/AIEA
GO:0000166GO-mf nucleotide binding EnsemblGenomesN/AIEA
GO:0004040GO-mf amidase activity EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding EnsemblGenomesN/AIEA
GO:0016874GO-mf ligase activity EnsemblGenomesN/AIEA
GO:0016884GO-mf carbon-nitrogen ligase activity, with glutamine as amido-N-donor EnsemblGenomesN/AIEA
GO:0016884GO-mf carbon-nitrogen ligase activity, with glutamine as amido-N-donor JGI N/AIEA
GO:0050567GO-mf glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity EnsemblGenomesN/AIEA
KOG1211 KOG Amidases JGI N/AIEA
PTHR11895Panther AMIDASE JGI N/AIEA
PTHR11895:SF7Panther GLUTAMYL-TRNA(GLN) AMIDOTRANSFERASE SUBUNIT A, MITOCHONDRIAL JGI N/AIEA
PF01425PFAM Amidase JGI N/AIEA
PWY-5921SoyCyc9 glutaminyl-tRNAgln biosynthesis via transamidation Plant Metabolic Network ISS
GN7V-44282SoyCyc9-rxn glutaminyl-tRNA synthase (glutamine-hydrolysing) Plant Metabolic Network ISS

Expression Patterns of Glyma.08g311400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.08g311400
ParalogEvidenceComments
Glyma.18g104200 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.08g311400 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma08g42430 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.08g311400
>Glyma.08g311400.1 sequence-type=CDS polypeptide=Glyma.08g311400.1.p locus=Glyma.08g311400 ID=Glyma.08g311400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCTATTATCCACACTTCAAACCCCTCGCTCCCTCTCTCGCCTCACGCGCCACCCTCACTCCTTCACCTCACGCGCCTCCCTCACCCACCAAACCCAAACGCTCACCCCCTCCTCCCCCTCCCCTCCGCCGCAGTCCGAAATCCTCTCCATCCGCCACGCCCTCCTCTCCCGCCGCGCCTCCGCCGCCGACCTTGTCCTCTCCCAACTCGCGCGCCTCCGCCTCGCCGAGCCCCGCCTCCGCTCCTTCCTCCACCTCCCCGACGATGACGCCCTCCTTGCCCACGCGCGCCGCCTCGACGCCCGCATCGCCGCCGGGGAGGACCCCGGCCCCCTCGCCGGCGTGCTGGTCGGCGTCAAGGACAACATTTGCACCGCCGACATGCCGTCGACCGCCGGGTCCCGCATCCTTGAAGGGTACCGGGCGCCGTTCGACGCCACCGCGGTGAAGAGAGTGAGGGAGTTAGGAGGGATCGTTGTTGGGAAAACCAATATGGATGAGTTTGGAATGGGTAGCACCACTGAAGCTTCTGCATTTCAGGTGACTGCCAACCCATGGGATGAGTCTAGGGTGCCAGGAGGATCATCAGGAGGATCAGCAGCTGCAGTTTCTGCCAGACAGTGTGTTGTATCGTTGGGAAGTGACACTGGTGGAAGTGTGAGGCAGCCAGCATCTTTTTGTGGTGTTGTAGGTTTGAAGCCAACTTATGGGCGTGTCTCAAGATTTGGACTTATGGCGTATGCATCATCACTTGATGCTATTGGCTGTTTTGGTTCATCGGTTGCTGATACTGGGACTCTCCTTCATGCAATTGCTGGCCATGATAGATTTGATGCCACCTCAAGTAAGCAGGATGTGCCTGACTTTCAATCTCATTTTGTCGCTGTGAGCTCCTTGGAAAGTAAGCCCTTGAAGGGACTGAGAGTTGGTTTGATCCGTGAAACTATTGATGATGGTGTTGATGCTGGAGTAATTTCTGCAATTCGGGCAGCTGCTTTGCATTTTGAGGAATTAGGATGCTCTGTGAATGAGGTTTCACTGCCATCCTTTTCCCTTGGGTTGCCAGCATATTATATCCTTGCTGTATCTGAATCATCTTCCAACTTGTCTCGTTATGATGGTATCAGATATGGAAACCAAGTTTATGCTGATGAGCTAGATTCTCTTTATGGAGGTTCCCGGGCTCAAGGGTTTGGTTCTGAGGTTAAAATGAGAATTTTGATGGGAACATATGCCCTTTCAGCTGGTTACTATGATGCATATTACAAACGTGCACAGCAGGTAAGGACCATAATTAGGAATAGCTTTAAGGAGGCCCTCAGTCAAAATGACATCTTGATTTCCCCTGCAGCTCCTTCAGCTGCTTATAAAATTGGTGAAAAGAAAAATGATCCATTGGCTATGTATGCAGGCGATATCATGACTGTAAATGTCAATCTAGCTGGACTACCTGCCTTGGTTTTGCCATGCGGATTTGTTGAGGGTGGGCCTTCAGGCCTTCCTGTTGGTCTGCAAATGATTGGTGCTGCATTTAATGAGGGAGAGCTGCTGAGAGTGGGACATATCTTTGAGCAAACCCTTGAAAATTGCAAATTCGTTCCACCAATTGTAGTTGATGACATTGCATACTGA
Predicted protein sequences of Glyma.08g311400
>Glyma.08g311400.1.p sequence-type=predicted peptide transcript=Glyma.08g311400.1 locus=Glyma.08g311400 ID=Glyma.08g311400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLLSTLQTPRSLSRLTRHPHSFTSRASLTHQTQTLTPSSPSPPPQSEILSIRHALLSRRASAADLVLSQLARLRLAEPRLRSFLHLPDDDALLAHARRLDARIAAGEDPGPLAGVLVGVKDNICTADMPSTAGSRILEGYRAPFDATAVKRVRELGGIVVGKTNMDEFGMGSTTEASAFQVTANPWDESRVPGGSSGGSAAAVSARQCVVSLGSDTGGSVRQPASFCGVVGLKPTYGRVSRFGLMAYASSLDAIGCFGSSVADTGTLLHAIAGHDRFDATSSKQDVPDFQSHFVAVSSLESKPLKGLRVGLIRETIDDGVDAGVISAIRAAALHFEELGCSVNEVSLPSFSLGLPAYYILAVSESSSNLSRYDGIRYGNQVYADELDSLYGGSRAQGFGSEVKMRILMGTYALSAGYYDAYYKRAQQVRTIIRNSFKEALSQNDILISPAAPSAAYKIGEKKNDPLAMYAGDIMTVNVNLAGLPALVLPCGFVEGGPSGLPVGLQMIGAAFNEGELLRVGHIFEQTLENCKFVPPIVVDDIAY*






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