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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G38020.1 | AT | vacuoleless1 (VCL1) | JGI | N/A | IEA |
| GO:0006886 | GO-bp | intracellular protein transport | EnsemblGenomes | N/A | IEA |
| GO:0006886 | GO-bp | intracellular protein transport | JGI | N/A | IEA |
| GO:0007033 | GO-bp | vacuole organization | EnsemblGenomes | N/A | IEA |
| GO:0016197 | GO-bp | endosomal transport | EnsemblGenomes | N/A | IEA |
| GO:0032889 | GO-bp | regulation of vacuole fusion, non-autophagic | EnsemblGenomes | N/A | IEA |
| GO:0035542 | GO-bp | regulation of SNARE complex assembly | EnsemblGenomes | N/A | IEA |
| GO:0005737 | GO-cc | cytoplasm | EnsemblGenomes | N/A | IEA |
| GO:0005737 | GO-cc | cytoplasm | JGI | N/A | IEA |
| GO:0005765 | GO-cc | lysosomal membrane | EnsemblGenomes | N/A | IEA |
| GO:0005768 | GO-cc | endosome | EnsemblGenomes | N/A | IEA |
| GO:0030897 | GO-cc | HOPS complex | EnsemblGenomes | N/A | IEA |
| GO:0003779 | GO-mf | actin binding | EnsemblGenomes | N/A | IEA |
| GO:0005515 | GO-mf | protein binding | EnsemblGenomes | N/A | IEA |
| KOG2280 | KOG | Vacuolar assembly/sorting protein VPS16 | JGI | N/A | IEA |
| PTHR12811 | Panther | VACUOLAR PROTEIN SORTING VPS16 | JGI | N/A | IEA |
| PF04840 | PFAM | Vps16, C-terminal region | JGI | N/A | IEA |
| PF04841 | PFAM | Vps16, N-terminal region | JGI | N/A | IEA |
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Glyma.08g307900 not represented in the dataset |
Glyma.08g307900 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.18g109800 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma08g42080 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.08g307900.1 sequence-type=CDS polypeptide=Glyma.08g307900.1.p locus=Glyma.08g307900 ID=Glyma.08g307900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCCAACGTCTCCGTCGCGGCGGAGTGGCAGCTCCTCTACAACCGCTACTACCGCAAGCCAGAGCTCTACCCTATGCCGTGGAAGCACGTGGACCTCGCCCGGACCAAGGTCGCCGCCGCGCCCTTCGGCGGCCCCGTCGCCGTCATCCGCGATGACTCAAAGATCGTCCAGCTCCACGCCGAGTCCGCTCTCCGCAAGCTCCGCCTCTTCTCCTCCTCCGGCCGCCCCCTCGCCGACGCCGTATGGCGCCACCCCGGCGGCCGCCTCGTCGGCATGTCCTGGACCGACGATCAAACTCTTCTCTGCGTCGTCCAGGACGGCACCGTTTACCGCTACGACGTCCACGCGAACCTAATCGAACCAAACCTCTCCCTCGGGAAAGAGTGCTTCGAAGACAACGTTGCGGATTGCGCGTTTTGGGGGCACGGTTTGGTCTGCATCACCGAGGCGAATCAGTTGTTCTGTATTGCTGATTTCAGGAACCCTAGCGCGGTGAAGCTCGCGGATCCCGGGATCGACGAGATGCCGCATTGTATGGCCGTGATTGAGCCGCAGTACACGGTTTCGGGGAATGTCGAGGTTCTGCTCGGCGTGGATGATGCTGTGGTGCTCGCTGTGGAGGAGGATGGCGTGCAGAGGCTTGGAGAGGGATTGTTGCGGGGGCCGCTGCAGAAGATGGTGGTTTCGCGCGACGGCAAGTGGCTCGCTTCGTTTACCCATGATGGGAGGCTCTTGGTGACGACTTCGGACTTGACTGGAGTTATCATCGAGAGGGATTGCGAGTCAGCTCTTCCTCCGCAGCAGATTGCTTGGTGTGGAATGGATGCTGTGCTGCTGTACTGGGATGATATGCTTTTAATGATGGGTCCTGAGGGAGAGCCAGTTCACTACCTTTTTGATGAACCAATAATTCTTATACCTGAGTGTGATGGAGTGAGGATATTGTCCAATACTAGTATGGAATTTCTACAGCGGGTGCCTGATTCCACCGTTTCGATCTTCACAATTGGAAGTACATCACCTGCTGCTTTACTATATGATGCCTTGGATCATTTTGATAGGCGAAGTGCCAAGGCAGATGAAAATTTGAGATTGATAAGATCATCCCTTCCTGAGGCTGTTGAAGCATGTGTTGATGCTGCAGGTCATGAATTTGATGTTTCACGCCAGCAAACTCTCCTAAGGGCAGCCAGTTATGGGCAAGCCTTTTGTAGCAATTTTCAACGTGATCGTATCCAAGAGATGTGTAAAATTCTGCGGGTCTTGAATGCAGTGCGCAGCCCTGAGATTGGCATTCCTCTTAGTATTCAGCAATACAAGTTGCTTACACCATCTGTTCTGATTGGTCGCCTGATTAATGCTCACCAACATCTGCTTGCACTGAAAGTATCAGAATATCTTGGAATGAATCAAGAGGTGGTGATAATGCACTGGGCATGTTCAAAGATAACTGCTTCACTGGCAATTCCTGATGTGACTCTTCTGGAGATTCTGCTGGATAAGTTAAAACTGTGCAAAGGCATTTCCTATGCAGCAGTTGCTGCTCATGCAGACAAAAATGACCGACGAAAGTTAGCTGCCTTGCTTGTTGAACACGAGCCTCGTTCATCGAAACAGGTTCCTCTCCTGTTAAGCATTGGAGAAGAAGATATAGCCTTGATAAAGGCGACCGAATGTGGTGATACAGATCTTGTTTACCTTGTACTTTTTCATATTTGGCAAAAGAGGCAACCATTGGAGTTCTTTGGCACTATACAGGCGAGACCATTGGCACGGGACTTATTTGTAACTTATGCACGGATTTATAAACACGAATTTTTGAAGGATTTCTTCTTATCAACTGGGCAACTTCAAGATGTGGCATTTCTTTTGTGGAAAGAATCATGGGAACTTGGGAAAAATCCCATGGCAAGCAAAGGATCTCCACTTCATGGTCCTCGAATAAAACTTATTGAGAAGGCACATGGTCTTTTTGCTGAAACCAAGGAGCATACCTTTGAATCAAAGGCAGCTGAAGAGCATGCAAAACTGTTAAGAATTCAGCATGAACTTGAAGTGACTACAAAGCAAGCCATTTTTGTGGATTCTAGTATAAGTGATACAATCCGTACTTGTATTGTCTTGGGAAATAATCGAGCTGCAATGAAAGTGAAAACGGAATTTAAGGTGTCTGAGAAGAGATGGTATTGGCTTAAAGTTTTTGCATTAGCTACAATCAAGGATTGGGTTGCCCTAGAGAAATTTTCAAAGGAGAAGAAACCTCCAATTGGTTATAGGCCATTTGTGGAGGCATGCATTGAAGCAGACGAAAAGGGAGAAGCTATTAAATATATCCCAAAACTTGCAGACCCTCGAGAAAGAGCTGAGTCATATGCTCGAATTGGTATGGCCAAGGAAGCTGCCGATGCTGCTTCACAGGCAAAAGATGGTGAATTACTTGGTCGGTTGAAATTGACTTTTGCACAAAATGCAGCAGCTTCATCAATATTTGATACTCTTCGAGATCGGTTGTCTTTCCAAGGTGCTTAA
>Glyma.08g307900.1.p sequence-type=predicted peptide transcript=Glyma.08g307900.1 locus=Glyma.08g307900 ID=Glyma.08g307900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MANVSVAAEWQLLYNRYYRKPELYPMPWKHVDLARTKVAAAPFGGPVAVIRDDSKIVQLHAESALRKLRLFSSSGRPLADAVWRHPGGRLVGMSWTDDQTLLCVVQDGTVYRYDVHANLIEPNLSLGKECFEDNVADCAFWGHGLVCITEANQLFCIADFRNPSAVKLADPGIDEMPHCMAVIEPQYTVSGNVEVLLGVDDAVVLAVEEDGVQRLGEGLLRGPLQKMVVSRDGKWLASFTHDGRLLVTTSDLTGVIIERDCESALPPQQIAWCGMDAVLLYWDDMLLMMGPEGEPVHYLFDEPIILIPECDGVRILSNTSMEFLQRVPDSTVSIFTIGSTSPAALLYDALDHFDRRSAKADENLRLIRSSLPEAVEACVDAAGHEFDVSRQQTLLRAASYGQAFCSNFQRDRIQEMCKILRVLNAVRSPEIGIPLSIQQYKLLTPSVLIGRLINAHQHLLALKVSEYLGMNQEVVIMHWACSKITASLAIPDVTLLEILLDKLKLCKGISYAAVAAHADKNDRRKLAALLVEHEPRSSKQVPLLLSIGEEDIALIKATECGDTDLVYLVLFHIWQKRQPLEFFGTIQARPLARDLFVTYARIYKHEFLKDFFLSTGQLQDVAFLLWKESWELGKNPMASKGSPLHGPRIKLIEKAHGLFAETKEHTFESKAAEEHAKLLRIQHELEVTTKQAIFVDSSISDTIRTCIVLGNNRAAMKVKTEFKVSEKRWYWLKVFALATIKDWVALEKFSKEKKPPIGYRPFVEACIEADEKGEAIKYIPKLADPRERAESYARIGMAKEAADAASQAKDGELLGRLKLTFAQNAAASSIFDTLRDRLSFQGA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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