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A previous version of this gene model can be found here:
Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
---|---|---|---|---|---|
AT2G43020.1 | AT | polyamine oxidase 2 | JGI | N/A | IEA |
AT3G59050.1 | AT | polyamine oxidase 3 | JGI | N/A | IEA |
GO:0055114 | GO-bp | oxidation-reduction process | EnsemblGenomes | N/A | IEA |
GO:0055114 | GO-bp | oxidation-reduction process | JGI | N/A | IEA |
GO:0016491 | GO-mf | oxidoreductase activity | EnsemblGenomes | N/A | IEA |
GO:0016491 | GO-mf | oxidoreductase activity | JGI | N/A | IEA |
KOG0029 | KOG | Amine oxidase | JGI | N/A | IEA |
PTHR10742 | Panther | AMINE OXIDASE | JGI | N/A | IEA |
PTHR10742:SF30 | Panther | POLYAMINE OXIDASE 1 | JGI | N/A | IEA |
PF01593 | PFAM | Flavin containing amine oxidoreductase | JGI | N/A | IEA |
PWY-6441 | SoyCyc9 | spermine and spermidine degradation III | Plant Metabolic Network | ISS | |
GN7V-59157 | SoyCyc9-rxn | non-specific polyamine oxidase | Plant Metabolic Network | ISS |
Glyma.08g303800 not represented in the dataset |
Glyma.08g303800 not represented in the dataset |
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
Paralog | Evidence | Comments |
---|---|---|
Glyma.18g116300 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
Corresponding Name | Annotation Version | Evidence | Comments |
---|---|---|---|
Glyma08g41570 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.08g303800.2 sequence-type=transcript locus=Glyma.08g303800 ID=Glyma.08g303800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATCGCTCCTCAACCGTtcttcttctttttctctctctagaattttttttttctctctctctctcccatctctcGGAAAATTTTTCAGAGCTTCCTAAAGCCTTTAGAATTCTCTGGAACCTTTTTGTTCGTCCGCCGAGGATCGCAATTCCTCCAAATCGTCGTCACTCGTCGCTTAGTTCGGTTCTAACTGCATGAACTGGTTCGGGAAGCTGGATTCATCATCGTCGAACTTGAACTTCAATCACTTCGTTACTTGTCTGTTGATTTTTATCCTCCATTTTTCGCCTCAATCGCTCTCTTCCACCTTCGATAGTAACACTAATCTCGAATTTAATTCCGAATATGGAGTCGAGAACTAAGAGTAATCCCCAATTAACAAGAGCTCTTTGCTATGCAAACGATGGCAATCAGCAGGGAAGGTCACCATCTGTTATTGTCATTGGTGGTGGCATGGCTGGGATTGCTGCTGCTCGTTCGCTCCATGATGCTTCGTTACAGGTTGTTCTCTTAGAGTCAAGGGAAAGAATTGGTGGCCGAATTCACACTGATTACTCATTTGGTTTTCCTGTGGACATGGGAGCATCATGGTTGCATGGAGTTTCCAATGAAAATCCACTGGCTTCGGTGATTGGGAGGCTAGGTCTACCCCTTTACCGTACTAGTGGGGATAATTCCATACTCTATGACCATGATTTGGAAAGCTATGGACTTTTTGATATGGATGGGAAACAGGTTCCTCAAGAGTTGGTAGCAAAAGTTGGTGAAATATTTGAGGCAATTTTGCAGGAGACAGATAAAATAAGGCAAGAATCCAGTGAAGACATGTCTGTACTTCGTGGTCTTTCAATCGTTTTCGATAGGAAGCCAGAACTGAGGTTGGAGGGGATTGCTTATAAGGTACTTCAGTGGTATTTATGTAGACTGGAGGGCTGGTTTGCTGCAGACACTGATGCTATTTCACTGAAAGGATGGGACCAGGAGGTACTGCTCCCTGGTGGTCATGGTCTTATGGTCCGTGGCTACTTGCCTGTTGTAAATAGCCTAGCCAAGGGTCTTGATATTCGATTGGGGCACAGGGTCACAAAAGTAGTTAGGCGATATAATGGAGTAAAGGTAACTGTGGAAAATGGGAAAACGTTTTTTGCTGATGCTGCTGTTATTGCTGTCCCACTTGGGGTGCTTAAGGCGAAGAAAATATTGTTTGAGCCAAAGCTTCCAGACTGGAAGGAAGCTGCCATTGCTGATCTTGGGATTGGACTTGAGAATAAAATCATTTTACACTTTGAAAATGTGTTTTGGCCTAATGTGGAGTTCTTGGGAGTAGTTGCAGATACACCTTATGAATGTAGCTACTTCCTTAATCTCCACAAGGCCACAGGTCGTGCTGTTCTCGTTTACATGCCTTCTGGGCAGCTTGCCAAAGACGTTGAAAAGATGCCTGATGAAGCAGCTGTCAACTTCGCTTTCATGCAGCTCAAGAAGATTTTTCCAGATGCTTCTTCACCGGGGAAGCAACAAGCATGAGCTATCCAGGATCTGTCCATGGGGCATACTCCACTGGAACGATGGCTGCTGAAGATTGCCGGATGCGTGTGCTCGAGCGATATGGAGAGGTTGATTTATTCCAGCCAGTGATGGGAGAAGAGGGTTCCATGTCTATCCCGCTTCAGATATCGCGTCTTTAATCGTCTTTGGGTCACAACTAGTGGACAGAAACACAATCTATCTATGCTTGTTCTTTTGTTATCAACCTATATATAAGTTATATAGCAAATGTTTTGGCAAATAGTCTTTAAGAGTATATGTCCACTTGTGAAATCACATTTTGTGTTGGATTTCCTTAGTCAGTGTTTCCAGTAACTGGTAATGTGAATATTGCGCACCTAAGAGGCGTTGTCACTTCTATCAGTATACTTATAATAAAATTGGGACAACAATTTATGTGTTTTTCTCGT >Glyma.08g303800.3 sequence-type=transcript locus=Glyma.08g303800 ID=Glyma.08g303800.3.Wm82.a2.v1 annot-version=Wm82.a2.v1 GTACGACGATTAGTTAGGAGAAAAGTCAGTTGTTTTATATCTGTACGCTATTGTTTTGTATATACCAAATGTGTACACCAAATCTTTGTTAGGAGATTTGAAAAAAGCAACTGTTTTTTCGTAGTTTGTAAACTATATACACTAATGAATTTAGGAAATGATTTTGATATTTACCGACCATACTTTTTGATAAATAATCCATCATGGTACAAAAATAATGTTCATATGAGGTTAGAGATAATTATAAGATAAGATAGATAATGTAATGAAAAGAGCTCTTTGCTATGCAAACGATGGCAATCAGCAGGGAAGGTCACCATCTGTTATTGTCATTGGTGGTGGCATGGCTGGGATTGCTGCTGCTCGTTCGCTCCATGATGCTTCGTTACAGGTTGTTCTCTTAGAGTCAAGGGAAAGAATTGGTGGCCGAATTCACACTGATTACTCATTTGGTTTTCCTGTGGACATGGGAGCATCATGGTTGCATGGAGTTTCCAATGAAAATCCACTGGCTTCGGTGATTGGGAGGCTAGGTCTACCCCTTTACCGTACTAGTGGGGATAATTCCATACTCTATGACCATGATTTGGAAAGCTATGGACTTTTTGATATGGATGGGAAACAGGTTCCTCAAGAGTTGGTAGCAAAAGTTGGTGAAATATTTGAGGCAATTTTGCAGGAGACAGATAAAATAAGGCAAGAATCCAGTGAAGACATGTCTGTACTTCGTGGTCTTTCAATCGTTTTCGATAGGAAGCCAGAACTGAGGTTGGAGGGGATTGCTTATAAGGTACTTCAGTGGTATTTATGTAGACTGGAGGGCTGGTTTGCTGCAGACACTGATGCTATTTCACTGAAAGGATGGGACCAGGAGGTACTGCTCCCTGGTGGTCATGGTCTTATGGTCCGTGGCTACTTGCCTGTTGTAAATAGCCTAGCCAAGGGTCTTGATATTCGATTGGGGCACAGGGTCACAAAAGTAGTTAGGCGATATAATGGAGTAAAGGTAACTGTGGAAAATGGGAAAACGTTTTTTGCTGATGCTGCTGTTATTGCTGTCCCACTTGGGGTGCTTAAGGCGAAGAAAATATTGTTTGAGCCAAAGCTTCCAGACTGGAAGGAAGCTGCCATTGCTGATCTTGGGATTGGACTTGAGAATAAAATCATTTTACACTTTGAAAATGTGTTTTGGCCTAATGTGGAGTTCTTGGGAGTAGTTGCAGATACACCTTATGAATGTAGCTACTTCCTTAATCTCCACAAGGCCACAGGTCGTGCTGTTCTCGTTTACATGCCTTCTGGGCAGCTTGCCAAAGACGTTGAAAAGATGCCTGATGAAGCAGCTGTCAACTTCGCTTTCATGCAGCTCAAGAAGATTTTTCCAGATGCTTCTTCACCGATTCAGTATCTTGTGTCTCGTTGGGGATCAGATATAAATTCACTAGGTTCATATAGCTATGATGCAGTTGGGAAACCCCATGAACTATATGAGAGGCTACGGGTCCCAGTAGATAACTTGTTCTTTGCAGGGGAAGCAACAAGCATGAGCTATCCAGGATCTGTCCATGGGGCATACTCCACTGGAACGATGGCTGCTGAAGATTGCCGGATGCGTGTGCTCGAGCGATATGGAGAGGTTGATTTATTCCAGCCAGTGATGGGAGAAGAGGGTTCCATGTCTATCCCGCTTCAGATATCGCGTCTTTAATCGTCTTTGGGTCACAACTAGTGGACAGAAACACAATCTATCTATGCTTGTTCTTTTGTTATCAACCTATATATAAGTTATATAGCAAATGTTTTGGCAAATAGTCTTTAAGAGTATATGTCCACTTGTGAAATCACATTTTGTGTTGGATTTCCTTAGTCAGTGTTTCCAGTAACTGGTAATGTGAATATTGCGCACCTAAGAGGCGTTGTCACTTCTATCAGTATACTTATAATAAAATTGGGACAACAATTTATGTGTTTTTCTCGT
>Glyma.08g303800.1 sequence-type=CDS polypeptide=Glyma.08g303800.1.p locus=Glyma.08g303800 ID=Glyma.08g303800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGAGTCGAGAACTAAGAGTAATCCCCAATTAACAAGAGCTCTTTGCTATGCAAACGATGGCAATCAGCAGGGAAGGTCACCATCTGTTATTGTCATTGGTGGTGGCATGGCTGGGATTGCTGCTGCTCGTTCGCTCCATGATGCTTCGTTACAGGTTGTTCTCTTAGAGTCAAGGGAAAGAATTGGTGGCCGAATTCACACTGATTACTCATTTGGTTTTCCTGTGGACATGGGAGCATCATGGTTGCATGGAGTTTCCAATGAAAATCCACTGGCTTCGGTGATTGGGAGGCTAGGTCTACCCCTTTACCGTACTAGTGGGGATAATTCCATACTCTATGACCATGATTTGGAAAGCTATGGACTTTTTGATATGGATGGGAAACAGGTTCCTCAAGAGTTGGTAGCAAAAGTTGGTGAAATATTTGAGGCAATTTTGCAGGAGACAGATAAAATAAGGCAAGAATCCAGTGAAGACATGTCTGTACTTCGTGGTCTTTCAATCGTTTTCGATAGGAAGCCAGAACTGAGGTTGGAGGGGATTGCTTATAAGGTACTTCAGTGGTATTTATGTAGACTGGAGGGCTGGTTTGCTGCAGACACTGATGCTATTTCACTGAAAGGATGGGACCAGGAGGTACTGCTCCCTGGTGGTCATGGTCTTATGGTCCGTGGCTACTTGCCTGTTGTAAATAGCCTAGCCAAGGGTCTTGATATTCGATTGGGGCACAGGGTCACAAAAGTAGTTAGGCGATATAATGGAGTAAAGGTAACTGTGGAAAATGGGAAAACGTTTTTTGCTGATGCTGCTGTTATTGCTGTCCCACTTGGGGTGCTTAAGGCGAAGAAAATATTGTTTGAGCCAAAGCTTCCAGACTGGAAGGAAGCTGCCATTGCTGATCTTGGGATTGGACTTGAGAATAAAATCATTTTACACTTTGAAAATGTGTTTTGGCCTAATGTGGAGTTCTTGGGAGTAGTTGCAGATACACCTTATGAATGTAGCTACTTCCTTAATCTCCACAAGGCCACAGGTCGTGCTGTTCTCGTTTACATGCCTTCTGGGCAGCTTGCCAAAGACGTTGAAAAGATGCCTGATGAAGCAGCTGTCAACTTCGCTTTCATGCAGCTCAAGAAGATTTTTCCAGATGCTTCTTCACCGATTCAGTATCTTGTGTCTCGTTGGGGATCAGATATAAATTCACTAGGTTCATATAGCTATGATGCAGTTGGGAAACCCCATGAACTATATGAGAGGCTACGGGTCCCAGTAGATAACTTGTTCTTTGCAGGGGAAGCAACAAGCATGAGCTATCCAGGATCTGTCCATGGGGCATACTCCACTGGAACGATGGCTGCTGAAGATTGCCGGATGCGTGTGCTCGAGCGATATGGAGAGGTTGATTTATTCCAGCCAGTGATGGGAGAAGAGGGTTCCATGTCTATCCCGCTTCAGATATCGCGTCTTTAA >Glyma.08g303800.2 sequence-type=CDS polypeptide=Glyma.08g303800.2.p locus=Glyma.08g303800 ID=Glyma.08g303800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGAGTCGAGAACTAAGAGTAATCCCCAATTAACAAGAGCTCTTTGCTATGCAAACGATGGCAATCAGCAGGGAAGGTCACCATCTGTTATTGTCATTGGTGGTGGCATGGCTGGGATTGCTGCTGCTCGTTCGCTCCATGATGCTTCGTTACAGGTTGTTCTCTTAGAGTCAAGGGAAAGAATTGGTGGCCGAATTCACACTGATTACTCATTTGGTTTTCCTGTGGACATGGGAGCATCATGGTTGCATGGAGTTTCCAATGAAAATCCACTGGCTTCGGTGATTGGGAGGCTAGGTCTACCCCTTTACCGTACTAGTGGGGATAATTCCATACTCTATGACCATGATTTGGAAAGCTATGGACTTTTTGATATGGATGGGAAACAGGTTCCTCAAGAGTTGGTAGCAAAAGTTGGTGAAATATTTGAGGCAATTTTGCAGGAGACAGATAAAATAAGGCAAGAATCCAGTGAAGACATGTCTGTACTTCGTGGTCTTTCAATCGTTTTCGATAGGAAGCCAGAACTGAGGTTGGAGGGGATTGCTTATAAGGTACTTCAGTGGTATTTATGTAGACTGGAGGGCTGGTTTGCTGCAGACACTGATGCTATTTCACTGAAAGGATGGGACCAGGAGGTACTGCTCCCTGGTGGTCATGGTCTTATGGTCCGTGGCTACTTGCCTGTTGTAAATAGCCTAGCCAAGGGTCTTGATATTCGATTGGGGCACAGGGTCACAAAAGTAGTTAGGCGATATAATGGAGTAAAGGTAACTGTGGAAAATGGGAAAACGTTTTTTGCTGATGCTGCTGTTATTGCTGTCCCACTTGGGGTGCTTAAGGCGAAGAAAATATTGTTTGAGCCAAAGCTTCCAGACTGGAAGGAAGCTGCCATTGCTGATCTTGGGATTGGACTTGAGAATAAAATCATTTTACACTTTGAAAATGTGTTTTGGCCTAATGTGGAGTTCTTGGGAGTAGTTGCAGATACACCTTATGAATGTAGCTACTTCCTTAATCTCCACAAGGCCACAGGTCGTGCTGTTCTCGTTTACATGCCTTCTGGGCAGCTTGCCAAAGACGTTGAAAAGATGCCTGATGAAGCAGCTGTCAACTTCGCTTTCATGCAGCTCAAGAAGATTTTTCCAGATGCTTCTTCACCGGGGAAGCAACAAGCATGA >Glyma.08g303800.3 sequence-type=CDS polypeptide=Glyma.08g303800.3.p locus=Glyma.08g303800 ID=Glyma.08g303800.3.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGAAAAGAGCTCTTTGCTATGCAAACGATGGCAATCAGCAGGGAAGGTCACCATCTGTTATTGTCATTGGTGGTGGCATGGCTGGGATTGCTGCTGCTCGTTCGCTCCATGATGCTTCGTTACAGGTTGTTCTCTTAGAGTCAAGGGAAAGAATTGGTGGCCGAATTCACACTGATTACTCATTTGGTTTTCCTGTGGACATGGGAGCATCATGGTTGCATGGAGTTTCCAATGAAAATCCACTGGCTTCGGTGATTGGGAGGCTAGGTCTACCCCTTTACCGTACTAGTGGGGATAATTCCATACTCTATGACCATGATTTGGAAAGCTATGGACTTTTTGATATGGATGGGAAACAGGTTCCTCAAGAGTTGGTAGCAAAAGTTGGTGAAATATTTGAGGCAATTTTGCAGGAGACAGATAAAATAAGGCAAGAATCCAGTGAAGACATGTCTGTACTTCGTGGTCTTTCAATCGTTTTCGATAGGAAGCCAGAACTGAGGTTGGAGGGGATTGCTTATAAGGTACTTCAGTGGTATTTATGTAGACTGGAGGGCTGGTTTGCTGCAGACACTGATGCTATTTCACTGAAAGGATGGGACCAGGAGGTACTGCTCCCTGGTGGTCATGGTCTTATGGTCCGTGGCTACTTGCCTGTTGTAAATAGCCTAGCCAAGGGTCTTGATATTCGATTGGGGCACAGGGTCACAAAAGTAGTTAGGCGATATAATGGAGTAAAGGTAACTGTGGAAAATGGGAAAACGTTTTTTGCTGATGCTGCTGTTATTGCTGTCCCACTTGGGGTGCTTAAGGCGAAGAAAATATTGTTTGAGCCAAAGCTTCCAGACTGGAAGGAAGCTGCCATTGCTGATCTTGGGATTGGACTTGAGAATAAAATCATTTTACACTTTGAAAATGTGTTTTGGCCTAATGTGGAGTTCTTGGGAGTAGTTGCAGATACACCTTATGAATGTAGCTACTTCCTTAATCTCCACAAGGCCACAGGTCGTGCTGTTCTCGTTTACATGCCTTCTGGGCAGCTTGCCAAAGACGTTGAAAAGATGCCTGATGAAGCAGCTGTCAACTTCGCTTTCATGCAGCTCAAGAAGATTTTTCCAGATGCTTCTTCACCGATTCAGTATCTTGTGTCTCGTTGGGGATCAGATATAAATTCACTAGGTTCATATAGCTATGATGCAGTTGGGAAACCCCATGAACTATATGAGAGGCTACGGGTCCCAGTAGATAACTTGTTCTTTGCAGGGGAAGCAACAAGCATGAGCTATCCAGGATCTGTCCATGGGGCATACTCCACTGGAACGATGGCTGCTGAAGATTGCCGGATGCGTGTGCTCGAGCGATATGGAGAGGTTGATTTATTCCAGCCAGTGATGGGAGAAGAGGGTTCCATGTCTATCCCGCTTCAGATATCGCGTCTTTAA
>Glyma.08g303800.1.p sequence-type=predicted peptide transcript=Glyma.08g303800.1 locus=Glyma.08g303800 ID=Glyma.08g303800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MESRTKSNPQLTRALCYANDGNQQGRSPSVIVIGGGMAGIAAARSLHDASLQVVLLESRERIGGRIHTDYSFGFPVDMGASWLHGVSNENPLASVIGRLGLPLYRTSGDNSILYDHDLESYGLFDMDGKQVPQELVAKVGEIFEAILQETDKIRQESSEDMSVLRGLSIVFDRKPELRLEGIAYKVLQWYLCRLEGWFAADTDAISLKGWDQEVLLPGGHGLMVRGYLPVVNSLAKGLDIRLGHRVTKVVRRYNGVKVTVENGKTFFADAAVIAVPLGVLKAKKILFEPKLPDWKEAAIADLGIGLENKIILHFENVFWPNVEFLGVVADTPYECSYFLNLHKATGRAVLVYMPSGQLAKDVEKMPDEAAVNFAFMQLKKIFPDASSPIQYLVSRWGSDINSLGSYSYDAVGKPHELYERLRVPVDNLFFAGEATSMSYPGSVHGAYSTGTMAAEDCRMRVLERYGEVDLFQPVMGEEGSMSIPLQISRL* >Glyma.08g303800.2.p sequence-type=predicted peptide transcript=Glyma.08g303800.2 locus=Glyma.08g303800 ID=Glyma.08g303800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 MESRTKSNPQLTRALCYANDGNQQGRSPSVIVIGGGMAGIAAARSLHDASLQVVLLESRERIGGRIHTDYSFGFPVDMGASWLHGVSNENPLASVIGRLGLPLYRTSGDNSILYDHDLESYGLFDMDGKQVPQELVAKVGEIFEAILQETDKIRQESSEDMSVLRGLSIVFDRKPELRLEGIAYKVLQWYLCRLEGWFAADTDAISLKGWDQEVLLPGGHGLMVRGYLPVVNSLAKGLDIRLGHRVTKVVRRYNGVKVTVENGKTFFADAAVIAVPLGVLKAKKILFEPKLPDWKEAAIADLGIGLENKIILHFENVFWPNVEFLGVVADTPYECSYFLNLHKATGRAVLVYMPSGQLAKDVEKMPDEAAVNFAFMQLKKIFPDASSPGKQQA* >Glyma.08g303800.3.p sequence-type=predicted peptide transcript=Glyma.08g303800.3 locus=Glyma.08g303800 ID=Glyma.08g303800.3.Wm82.a2.v1 annot-version=Wm82.a2.v1 MKRALCYANDGNQQGRSPSVIVIGGGMAGIAAARSLHDASLQVVLLESRERIGGRIHTDYSFGFPVDMGASWLHGVSNENPLASVIGRLGLPLYRTSGDNSILYDHDLESYGLFDMDGKQVPQELVAKVGEIFEAILQETDKIRQESSEDMSVLRGLSIVFDRKPELRLEGIAYKVLQWYLCRLEGWFAADTDAISLKGWDQEVLLPGGHGLMVRGYLPVVNSLAKGLDIRLGHRVTKVVRRYNGVKVTVENGKTFFADAAVIAVPLGVLKAKKILFEPKLPDWKEAAIADLGIGLENKIILHFENVFWPNVEFLGVVADTPYECSYFLNLHKATGRAVLVYMPSGQLAKDVEKMPDEAAVNFAFMQLKKIFPDASSPIQYLVSRWGSDINSLGSYSYDAVGKPHELYERLRVPVDNLFFAGEATSMSYPGSVHGAYSTGTMAAEDCRMRVLERYGEVDLFQPVMGEEGSMSIPLQISRL*
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