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Report for Sequence Feature Glyma.08g301000

Feature Type:gene_model
Chromosome:Gm08
Start:41904108
stop:41904767
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.08g301000
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
ATMG00270.1AT NADH dehydrogenase 6 JGI N/AIEA
GO:0055114GO-bp oxidation-reduction process EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process JGI N/AIEA
GO:0005739GO-cc mitochondrion EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0008137GO-mf NADH dehydrogenase (ubiquinone) activity EnsemblGenomesN/AIEA
GO:0008137GO-mf NADH dehydrogenase (ubiquinone) activity JGI N/AIEA
GO:0016491GO-mf oxidoreductase activity EnsemblGenomesN/AIEA
PF00499PFAM NADH-ubiquinone/plastoquinone oxidoreductase chain 6 JGI N/AIEA
PWY-3781SoyCyc9 aerobic respiration I (cytochrome c) Plant Metabolic Network ISS
PWY-4302SoyCyc9 aerobic respiration III (alternative oxidase pathway) Plant Metabolic Network ISS
PWY-5083SoyCyc9 NAD/NADH phosphorylation and dephosphorylation Plant Metabolic Network ISS
GN7V-53974SoyCyc9-rxn NADH:ubiquinone reductase (H+-translocating) Plant Metabolic Network ISS

Expression Patterns of Glyma.08g301000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.08g301000 not represented in the dataset
Glyma.08g301000 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.08g301000 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma08g41251 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.08g301000
>Glyma.08g301000.1 sequence-type=CDS polypeptide=Glyma.08g301000.1.p locus=Glyma.08g301000 ID=Glyma.08g301000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGATACTTTCTGTTTTGTCGAGCCCTGCTTTGGTCTCTGGTTTGATGGTTGCACGTGCTAAAAATCCGGTACATTCTGTTTTGTTTCCCATCCCAGTCTTTCGCGACACTTCAGGTTTACTTCTTTTGTTAGGTCTCGACTTCTCCGCTATGATCTTCCCAGTAGTTCATATAGGAGCTATAGCCGTATCATTCCTATTCGTTGTTATGATGTTCCATATTCAAATAGCGGAGATTCACGAAGAAGTATTGCGCTATTTACCAGTGAGTGGTATTATTGGACTGATCCTTTGGTGGGAAATGTTCTTCATTTTAGATAATGAAACCATTCCATTACTACCAACCCAAAGAAATACTACCTCTCTTAGATATACGGTTTATGCCGGAAAGGTACGAAGTTGGACTAATTTGGAAACATTGGGCAATTTACTTTATACCTACTATTTCGTCTGGTTTTTGGTTCCTAGTCTAATTTTATTAGTTGCCATGATTGGGGCTATAGTACTTACTATGCATAGGACTACTGAGGTAAAAAGACAGGATGTTTTCCGACTAAATGCTATTGATTTTAGGAGGACTATAATGAGGAGGACGACAGACCACTCACGATCGACTAAAAGGAAAGTCGCCCGGAGATATTGGTTCAAATCCAATTCGTGA
Predicted protein sequences of Glyma.08g301000
>Glyma.08g301000.1.p sequence-type=predicted peptide transcript=Glyma.08g301000.1 locus=Glyma.08g301000 ID=Glyma.08g301000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MILSVLSSPALVSGLMVARAKNPVHSVLFPIPVFRDTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKVRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTEVKRQDVFRLNAIDFRRTIMRRTTDHSRSTKRKVARRYWFKSNS*






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