SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.08g296900

Feature Type:gene_model
Chromosome:Gm08
Start:40715449
stop:40719426
Source:JGI
Version:Wm82.a4.v1
High confidence:yes



Annotations for Glyma.08g296900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G14420.1AT AT59 JGI N/AIEA
4.2.2.2EC pectate lyase JGI N/AIEA
GO:0030570GO-mf pectate lyase activity JGI N/AIEA
K01728KEGG Quorum sensing JGI N/AIEA
PTHR31683PantherFam PECTATE LYASE 18-RELATED JGI N/AIEA
PF00544Pfam Pectate lyase JGI N/AIEA
PF04431Pfam Pectate lyase, N terminus JGI N/AIEA

Gene model name correspondences to Glyma.08g296900 Gene Call Version Wm82.a4.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma08g40820 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.08g296900
>Glyma.08g296900.1 sequence-type=CDS polypeptide=Glyma.08g296900.1.p locus=Glyma.08g296900 id=Glyma.08g296900.1.Wm82.a4.v1 annot-version=Wm82.a4.v1
ATGGCGAACTGTCAGCAATATTATTTTCTTTTGCTTTCTCTGGCAATTTTTATTCCTACCCTGAATGCCAATTCCTTAGAGAAAGATGAGTATTGGCAGAGCCATGTCTATGAGTTTGATAGTTATTGGCAGGAAAGGGCAAAAGCCGCTAAAGTGGACAGTCAGGCAGCTTATTTTGAAGACCCATATTCAGTCTCCAGCAACTTCACTTCCAGTGTTAGCGAACTCACAATTGGCAAGAAGGATTTACGAAGGAACTTGAAGGGAAAATATCGTGGTGACGGTCCATGCATAGCCACAAACCCCATCGACAGGTGTTGGAGGTGTGACCCCAATTGGGCCAACAATCGCCAGAAGCTCGCAGATTGCGTCCAAGGCTTCGGTAGAAACACCGTTGGAGGCAAAGGTGGACCATTCTACGTGGTCACCGATCCCTCCGACGATGATATGGTGAACCCTAAACCCGGCACGCTCCGCCACGCGGTCACGCGTGACGGCCCGTTGTGGATCATCTTTGCTCGAAGCATGTTCATCACCCTCCAACAGGAGCTCATCATGAACAGCAACAAGACCATTGATGGAAGAGGTGTCGATGTTTACATTGCCAAGGGTGCTGGCATCACGGTGCAGTTTGTGAAGAACATCATCATCCATGGGATCAAGGTCTTTGACATCGTGATTCGTGAGGGTGGGATGATCAGAGATTCTGAGACACATTATGGTTTCAGGACTAAGAGTGATGGTGATGGCATTTCCATCTTTGGTAGCAGCAATGTTTGGATTGACCATGTTTCCATGAGAAATTGTAGTGATGGACTCATTGATGCCATCATGGGATCCACTGCTATTACCATCTCCAACAGCCATTTCACAGACCACAATGAGGTGATGTTGTTTGGTGCCAGTGACAGTTATTCTGATGATAAGATCATGCAAATCACCTTGGCATTCAACCACTTCGGCAAAAGATTAGTTCAAAGGATGCCCAGAGTTCGATATGGTTTTGTCCATTCGGTAAATAATGACTACACTCACTGGGAAATGTATGCCATTGGTGGTAGCAAGAACCCCACCATTATCAGTGAGGGTAACCGTTTTATTGCCCCTGACAACCAATTCGCTAAACAGATTACAAAGAGGGAATACGCACCAGAAAACGTATGGGCAAATTGGCAGTGGAGATCAATTAACGATGTGTACATGAATGGAGCATTTTTTGTGCAATCTGGGCCTGAGCTGGCTAGCAGACCATTCTCAAGAGAAGACATGATCACCGCTAAGGTAGGAAATTATGTAGGAAGGCTTACACGCTATTCTGGCAACCTGTTGAAGTGCAGAGTGGGTCGCCCTTGTTAA
Predicted protein sequences of Glyma.08g296900
>Glyma.08g296900.1.p sequence-type=predicted peptide transcript=Glyma.08g296900.1 locus=Glyma.08g296900 id=Glyma.08g296900.1.p.Wm82.a4.v1 annot-version=Wm82.a4.v1
MANCQQYYFLLLSLAIFIPTLNANSLEKDEYWQSHVYEFDSYWQERAKAAKVDSQAAYFEDPYSVSSNFTSSVSELTIGKKDLRRNLKGKYRGDGPCIATNPIDRCWRCDPNWANNRQKLADCVQGFGRNTVGGKGGPFYVVTDPSDDDMVNPKPGTLRHAVTRDGPLWIIFARSMFITLQQELIMNSNKTIDGRGVDVYIAKGAGITVQFVKNIIIHGIKVFDIVIREGGMIRDSETHYGFRTKSDGDGISIFGSSNVWIDHVSMRNCSDGLIDAIMGSTAITISNSHFTDHNEVMLFGASDSYSDDKIMQITLAFNHFGKRLVQRMPRVRYGFVHSVNNDYTHWEMYAIGGSKNPTIISEGNRFIAPDNQFAKQITKREYAPENVWANWQWRSINDVYMNGAFFVQSGPELASRPFSREDMITAKVGNYVGRLTRYSGNLLKCRVGRPC*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo