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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G69830.1 | AT | alpha-amylase-like 3 | JGI | N/A | IEA |
| GO:0005975 | GO-bp | carbohydrate metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0005975 | GO-bp | carbohydrate metabolic process | JGI | N/A | IEA |
| GO:0003824 | GO-mf | catalytic activity | EnsemblGenomes | N/A | IEA |
| GO:0003824 | GO-mf | catalytic activity | JGI | N/A | IEA |
| GO:0004556 | GO-mf | alpha-amylase activity | EnsemblGenomes | N/A | IEA |
| GO:0004556 | GO-mf | alpha-amylase activity | JGI | N/A | IEA |
| GO:0005509 | GO-mf | calcium ion binding | EnsemblGenomes | N/A | IEA |
| GO:0005509 | GO-mf | calcium ion binding | JGI | N/A | IEA |
| GO:0043169 | GO-mf | cation binding | JGI | N/A | IEA |
| KOG0471 | KOG | Alpha-amylase | JGI | N/A | IEA |
| PTHR10357 | Panther | ALPHA-AMYLASE | JGI | N/A | IEA |
| PTHR10357:SF9 | Panther | JGI | N/A | IEA | |
| PF00128 | PFAM | Alpha amylase, catalytic domain | JGI | N/A | IEA |
| PF07821 | PFAM | Alpha-amylase C-terminal beta-sheet domain | JGI | N/A | IEA |
| GN7V-50520 | SoyCyc9-rxn | 4-α-D-{(1![[arrow to right]](../../greek/ARROWR.GIF) 4)-α-D-glucano}trehalose trehalohydrolase |
Plant Metabolic Network | ISS |
| Locus | Gene Symbol | Protein Name |
|---|---|---|
| AMY3 | Alpha-amylase 3 gene 1 |
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Glyma.08g296800 not represented in the dataset |
Glyma.08g296800 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.18g125300 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma08g40810 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.08g296800.1 sequence-type=CDS polypeptide=Glyma.08g296800.1.p locus=Glyma.08g296800 ID=Glyma.08g296800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGAGTATCTCCACCACTACCACCACCCCTCTCTTCTGCTTCAACCACTACTTCACAAGAGAAAGAGAACTTTCCATTCACCGTTCCAGGCCAAAGCCATTCTCTCTCACTTCCGCTTCCACTCTCACCCTCTTCAACTCCAACAACAACAATAACTGTAACTATAGCTTTGCCTCTTGCAAACCACACAAGTTTCACACTCCAAAGTTTGAAGCTTTTGCCACAAACACGGATACCCTCGAGTCAATTCAGTCCTCTGATGTCTCGTTCGATCAGACTTTCCCCATCAACCGAACTGAACTGGTGGAGGGAAAGATCTTTGTAAGATTGGATCAGGGGAAGGATTTGGGAAATTGGGAGCTTACAGTGGGTTGCAATCTACCAGGGAAATGGATTCTTCACTGGGGAGTTTCCCGTGTGGATGATGTTGGAAGTGAATGGGATCAACCTCCTCGCGATATGATACCCCCTGGATCTATTCCTATTAAGGACTATGCAATAGAGACACCTATGAAGAAATCATTGTCATCTGCTGAAGGAGATATTTTACATGAAGTCAAGATTGATCTTAAACCCAACAATGATATTTCAGCTATTAATTTTGTTCTCAAGGATGAGGAAACCGGTGCTTGGTACCAACACAAAGGAAGAGATTTCAAGGTTCCTCTGGTCAACTACCTTAAAGAGGATGCTAATATAATTGGACCTAAAAAGGGTTTTAGTTTGTGGCCAGGGGCCTTGGGGCAGATATCTAACATTCTCCTCAAGTCAGAAGCAACACATGACAAAGATCAAGATGACAACAGTGGATCCATAAATACAAAAGTGGAAAATAGTCAACTGGAAGGTTTCTATGTAGACCTATCAATTACCAAGGAAGTTATTGTCGAAAACTCTATCAGTGTCTCCATTAGGAAGTGCTCTGAGACAGCTAAGAATATTTTATATTTAGAAACAGATATACCTGGAGATATTCTCCTTCACTGGGGTGTTTGTAGGGATGATTTGAAGTGGTGGGAAATTCCACCTGCTCCTCATCCACCAGAAACAATAGCATTTAAGGACAGAGCTTTAAGAACTAAATTACAGTCAAGAGACAGTGGAGAGGGAAGTTCAGTACAACTCTCTTTGGGAGAAGAATTTTCTGGATTTCTTTTTGTTCTTAAGCTAAATGACAGTACTTGGATAAATGACATGGGAGATGACTTTTATATCCCTCTCCCAAGTTCTGGAAGCATAATTACTGGCAACAGAGAAGATCAATCAGAAGGTGTGCAGAAGGAAGTGACTGAAGAGGCAGGTCAAGAGGAATCTATATCTGCATTTACTGATGAAATAATCAACGAAATAAGGCATTTGGTGACAGACATTTCCTCTGAGAAGAATCGAAAGACAAAATCCAAAGAAGCACAAGAAAGCATTCTTCAAGAAATTGAAAAACTAGCTGCTGAAGCTTATAGTATCTTCAGAAGCTCAGTTCCAAGTTTCTCAGAGGAAACTATTGCGGAATCTGAGGCTGCTGTGGAATCTAAGACACTATTATTGCCTGACTTGCCTCCACAAATTTCCTCGGGAACAGGCACAGGGTACGAAATTGTATGCCAAGGGTTTAATTGGGAATCTCATAAATCTGGAAGATGGTATATGGAGCTTAAAGAGAAAGCTGCAGAACTGGCATCATTTGGCTTTACTGTGATATGGTTACCACCACCTACAGAGTCTGTTTCACCTGAAGGATATATGCCAAAGGATTTATATAATTTAAATTCTAGATATGGAACTATTGATGAACTGAAGGATGTGGTGAAAACTTTGCATGAAGTTGGAATCAAAGTGCTTGGAGATGCTGTTTTAAATCACCGCTGTGCTCACTTCAAGAACCAGAGTGGTATTTGGAACTTATTTGGAGGTCGTCTCAACTGGGATGATCGTGCAATTGTAGCTGATGATCCACATTTTCAGGGGAGAGGCAACAAGAGTAGTGGAGACAATTTTCATGCTGCTCCAAACATTGATCATTCACAGGACTTTGTGAGAAAGGATCTTAAAGAATGGTTATGCTGGATGAGGGAAGAAATTGGGTATGATGGGTGGAGGCTTGACTTTGTCAGGGGATTTTGGGGTGGCTATGTAAAGGACTACCTGGAAGCAAGTGAACCTTACTTTGCGGTAGGAGAGTACTGGGATTCCCTTAGTTATACATATGGTGAAATGGATCATAATCAAGATGCACATAGGCAGAGGATCGTTGACTGGATCAATGCTACTGCTGGTACTGCTGGTGCATTTGATGTTACAACCAAAGGGATTCTTCACTCTGCTTTGGAAAGATGTGAATATTGGCGCTTGTCAGATCAGAAGGGGAAACCCCCCGGTGTTCTTGGATGGTGGCCGTCTCGTGCTGTTACTTTTATAGAAAATCATGACACTGGCTCTACCCAGGGTCATTGGAGATTTCCCAGTGGAAAAGAAATGCAGGGATATGCCTACACTCTTACTCACCCAGGAACACCATCAGTGTTCTATGACCATATTTTTTCTCACTATAAAACTGAAATAGCAACACTTATCTCTATCAGGAAGCGGAACAAGATCCACTGCAGGAGTACACTTAAAATTTGCAAGGCAGAAAGGGATGTTTATGCAGCTATCGTTGATGACAAAGTTGCTATGAAAATTGGACCTGGTCATTTTGAACCACCTAGTGGATCTCAAAGATGGTCCTCAGCTTTGGAGGGAAGGGACTATAAGATTTGGGAGGCATCATAA
>Glyma.08g296800.1.p sequence-type=predicted peptide transcript=Glyma.08g296800.1 locus=Glyma.08g296800 ID=Glyma.08g296800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MSISTTTTTPLFCFNHYFTRERELSIHRSRPKPFSLTSASTLTLFNSNNNNNCNYSFASCKPHKFHTPKFEAFATNTDTLESIQSSDVSFDQTFPINRTELVEGKIFVRLDQGKDLGNWELTVGCNLPGKWILHWGVSRVDDVGSEWDQPPRDMIPPGSIPIKDYAIETPMKKSLSSAEGDILHEVKIDLKPNNDISAINFVLKDEETGAWYQHKGRDFKVPLVNYLKEDANIIGPKKGFSLWPGALGQISNILLKSEATHDKDQDDNSGSINTKVENSQLEGFYVDLSITKEVIVENSISVSIRKCSETAKNILYLETDIPGDILLHWGVCRDDLKWWEIPPAPHPPETIAFKDRALRTKLQSRDSGEGSSVQLSLGEEFSGFLFVLKLNDSTWINDMGDDFYIPLPSSGSIITGNREDQSEGVQKEVTEEAGQEESISAFTDEIINEIRHLVTDISSEKNRKTKSKEAQESILQEIEKLAAEAYSIFRSSVPSFSEETIAESEAAVESKTLLLPDLPPQISSGTGTGYEIVCQGFNWESHKSGRWYMELKEKAAELASFGFTVIWLPPPTESVSPEGYMPKDLYNLNSRYGTIDELKDVVKTLHEVGIKVLGDAVLNHRCAHFKNQSGIWNLFGGRLNWDDRAIVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDLKEWLCWMREEIGYDGWRLDFVRGFWGGYVKDYLEASEPYFAVGEYWDSLSYTYGEMDHNQDAHRQRIVDWINATAGTAGAFDVTTKGILHSALERCEYWRLSDQKGKPPGVLGWWPSRAVTFIENHDTGSTQGHWRFPSGKEMQGYAYTLTHPGTPSVFYDHIFSHYKTEIATLISIRKRNKIHCRSTLKICKAERDVYAAIVDDKVAMKIGPGHFEPPSGSQRWSSALEGRDYKIWEAS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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