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Report for Sequence Feature Glyma.08g291300

Feature Type:gene_model
Chromosome:Gm08
Start:40518158
stop:40525673
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.08g291300
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G24090.1AT RNase H family protein JGI N/AIEA
GO:0090502GO-bp RNA phosphodiester bond hydrolysis, endonucleolytic EnsemblGenomesN/AIEA
GO:0003676GO-mf nucleic acid binding EnsemblGenomesN/AIEA
GO:0003676GO-mf nucleic acid binding JGI N/AIEA
GO:0004523GO-mf RNA-DNA hybrid ribonuclease activity EnsemblGenomesN/AIEA
GO:0004523GO-mf RNA-DNA hybrid ribonuclease activity JGI N/AIEA
PTHR10178Panther GAG/POL/ENV POLYPROTEIN JGI N/AIEA
PTHR10178:SF22Panther JGI N/AIEA
PF00075PFAM RNase H JGI N/AIEA

Expression Patterns of Glyma.08g291300
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.08g291300 not represented in the dataset
Glyma.08g291300 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.08g291300
ParalogEvidenceComments
Glyma.18g133000 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.08g291300 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma08g40181 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.08g291300
>Glyma.08g291300.1 sequence-type=CDS polypeptide=Glyma.08g291300.1.p locus=Glyma.08g291300 ID=Glyma.08g291300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAACCGCTTGTCGCAGCTCTCATCGTACACCGCCGCCATAGTCGGAAGCACCGTTCGCCTCATCGCGAACCGCTCCCTGCGCCACCGGTGCTGCTCGTTCCCGGCGAAACCAGAGTACCGCGGAATTAGGTCTTTCCGTTCAGAATTCGCGTTGACCGCCGCTCGCTGCTACTCCGCCAAGAAAGGGCGCAAGAGCAAGGCGGAGCCTGAAGTGCCGGCGGTGGTGATGGAGCAGGAGAAAGACGCTTTCTACGTCGTTCGGAAAGGGGACGTTGTTGGAATCTATAACAGTCTCGCTGATTCTCAGGCTCAAGTTGGATCTTCCGTATGCAATCCTCCTGTTAGTGTGTACAAGGGATACTCGTTGTCAAAGGACACCGAGGAATATCTTGTCTCACATGGACTGAAGAATGCTTTATACACAATTAGAGCTACTGATTTGAAAGAGGATTTGTTTGGCATGCTTGTTCCTTGCCCTTTCCAGGAACCTTCTACCAAAGAGGGCACATCAAATAAGGACGTATCTAAACAGAGATCTTTGGGAGTGCTTGCACAAGATGAGAAAGTAATCTCTGAAGATCCCTTCAGAAAGCAAGTCAAGTTAGAATATGCTGAAGTGGCTGAAGCACCTTCACATGCAACTCGGACTTGTTTTGTTGAGTTTGATGGTGCGTCAAAAGGAAATCCTGGAAAAGCTGGTGCTGGGGCTATTCTGCGAGCTAATGATGGAAGCTTGATTTGTAGGGTGCGTGAAGGTGTTGGTATAGCAACAAACAATGCTGCTGAATATCGTGCAATGATATTGGGAATGAAATATGCTCTTAAAAAGGGATTTACTGGTATTTGTATCCAAGGTGATTCCAAACTTGTTTGCATGCAGATTGATGGTTCCTGGAAGGTCAAGAATGAAAACTTGTTTACATTGTATAATGTGGCCAAAGAACTCAAGGATAAATTTTCCTCATTCCAGATCAGTCATGTTCTAAGGAACTTCAACTCTGATGCTGACGCTCAAGCAAATTTGGCTATCAATCTTGTAGATGGCCAAGTCCAGGAAGAGTGTGTGTAA
Predicted protein sequences of Glyma.08g291300
>Glyma.08g291300.1.p sequence-type=predicted peptide transcript=Glyma.08g291300.1 locus=Glyma.08g291300 ID=Glyma.08g291300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MNRLSQLSSYTAAIVGSTVRLIANRSLRHRCCSFPAKPEYRGIRSFRSEFALTAARCYSAKKGRKSKAEPEVPAVVMEQEKDAFYVVRKGDVVGIYNSLADSQAQVGSSVCNPPVSVYKGYSLSKDTEEYLVSHGLKNALYTIRATDLKEDLFGMLVPCPFQEPSTKEGTSNKDVSKQRSLGVLAQDEKVISEDPFRKQVKLEYAEVAEAPSHATRTCFVEFDGASKGNPGKAGAGAILRANDGSLICRVREGVGIATNNAAEYRAMILGMKYALKKGFTGICIQGDSKLVCMQIDGSWKVKNENLFTLYNVAKELKDKFSSFQISHVLRNFNSDADAQANLAINLVDGQVQEECV*






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