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Report for Sequence Feature Glyma.08g289900

Feature Type:gene_model
Chromosome:Gm08
Start:40304775
stop:40307300
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.08g289900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G16790.1AT P-loop containing nucleoside triphosphate hydrolases superfamily protein JGI N/AIEA
AT2G16790.2AT P-loop containing nucleoside triphosphate hydrolases superfamily protein JGI N/AIEA
GO:0000103GO-bp sulfate assimilation JGI N/AIEA
GO:0005975GO-bp carbohydrate metabolic process EnsemblGenomesN/AIEA
GO:0016310GO-bp phosphorylation EnsemblGenomesN/AIEA
GO:0046177GO-bp D-gluconate catabolic process EnsemblGenomesN/AIEA
GO:0000166GO-mf nucleotide binding EnsemblGenomesN/AIEA
GO:0004020GO-mf adenylylsulfate kinase activity JGI N/AIEA
GO:0005524GO-mf ATP binding EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding JGI N/AIEA
GO:0016301GO-mf kinase activity EnsemblGenomesN/AIEA
GO:0016740GO-mf transferase activity EnsemblGenomesN/AIEA
GO:0046316GO-mf gluconokinase activity EnsemblGenomesN/AIEA
KOG3354 KOG Gluconate kinase JGI N/AIEA
PTHR11603Panther AAA FAMILY ATPASE JGI N/AIEA
PTHR11603:SF49Panther GLUCONOKINASE-RELATED JGI N/AIEA
PTHR24220Panther FAMILY NOT NAMED JGI N/AIEA
PTHR24220:SF77Panther JGI N/AIEA
PF01202PFAM Shikimate kinase JGI N/AIEA
PWY-5530SoyCyc9 sorbitol biosynthesis II Plant Metabolic Network ISS
GN7V-40802SoyCyc9-rxn gluconokinase Plant Metabolic Network ISS

Expression Patterns of Glyma.08g289900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.08g289900 not represented in the dataset
Glyma.08g289900 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.08g289900
ParalogEvidenceComments
Glyma.18g134600 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.08g289900 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma08g40000 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.08g289900
>Glyma.08g289900.2 sequence-type=transcript locus=Glyma.08g289900 ID=Glyma.08g289900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
CTTTTCAAGGCTCTCTCTATTGTTTAGGTTCCAAAGTCAATATACAATTTCTGATCTCTGCATCTCAATCCAATAGATCAAATATGCCTTCAAACGATGCACAATAGGTCAGATGCTGGAAAAAGAGTTGAAATACAAGTATCTTGATGCTGATGATTTTCACTTAGAATCAAACAAAGAAAAGATGCGAATGGGAATCCCCCTAACCGATGAAGACCGGATGCCATGGCTTGAATCGCTATGCTACGCCATAAAAGAATACTTGAATAACAAAAAGGGTCTGGTTCTTGGTTGTTCTGCTTTGAAGAAGGAATATAGAGAAATTCTTAGATCAGGTGATACTAGTTATAATTGGGGGACTTATGCAAGTGCTGTCAACTTCATTCTCTTGGATGCTCCTGCTGAAGTGCTAAGTGTTCGAGTGAATAAGAGAGCTGCAGAAGGAAAACATTATATGCCTGCATCGCTTTTGCAATCTCAGTTAGATTTGCTTAAGATTGATGAGCCTGAGGGAGTACTTAGAGTTGATGCTACTTTGAGACCCCAAGACATTGTAAACACCATTCTAAACATGGATCAGTTTCAGGGCTGTTTCAATCATGATTTTGTTGAATCTCTTTGATAGATTTGGATAATTATTTTAGGTTTCAAATATAGGTTGTACAAATAAAAGGAAGAATAGGATTATGCTTGAGAGAAATGGAGAAGGGAATGGTTCAGAGCAGGATAACCAATAGAAAAAATAGGGGCAAGCTGCAAATATGAATTTTTAGCATTCCCTGGATTGATTCATGCCATTCAATTTCTTTTTCACCATATGGTGTCTATATATAGAACATTGCATGTCTAAATAGACCATTGTTTTGTAACTGAATTTTTTCTTACAATCATTTAATTAAACTTTAATGATTCGACTTAGAACAGGATAGTGTATTGTCCAATCTAAAACACCAAGTAATTTGAATCACAATTCAGTTTGTTTTG
Coding sequences of Glyma.08g289900
>Glyma.08g289900.1 sequence-type=CDS polypeptide=Glyma.08g289900.1.p locus=Glyma.08g289900 ID=Glyma.08g289900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCCTTCAAACGATGGTATAGTTATCGTGGTCATGGGTGTCAGCGGTGCTGGAAAAACCACAATAGGTCAGATGCTGGAAAAAGAGTTGAAATACAAGTATCTTGATGCTGATGATTTTCACTTAGAATCAAACAAAGAAAAGATGCGAATGGGAATCCCCCTAACCGATGAAGACCGGATGCCATGGCTTGAATCGCTATGCTACGCCATAAAAGAATACTTGAATAACAAAAAGGGTCTGGTTCTTGGTTGTTCTGCTTTGAAGAAGGAATATAGAGAAATTCTTAGATCAGGTGATACTAGTTATAATTGGGGGACTTATGCAAGTGCTGTCAACTTCATTCTCTTGGATGCTCCTGCTGAAGTGCTAAGTGTTCGAGTGAATAAGAGAGCTGCAGAAGGAAAACATTATATGCCTGCATCGCTTTTGCAATCTCAGTTAGATTTGCTTAAGATTGATGAGCCTGAGGGAGTACTTAGAGTTGATGCTACTTTGAGACCCCAAGACATTGTAAACACCATTCTAAACATGGATCAGTTTCAGGGCTGTTTCAATCATGATTTTGTTGAATCTCTTTGA

>Glyma.08g289900.2 sequence-type=CDS polypeptide=Glyma.08g289900.2.p locus=Glyma.08g289900 ID=Glyma.08g289900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCTGGAAAAAGAGTTGAAATACAAGTATCTTGATGCTGATGATTTTCACTTAGAATCAAACAAAGAAAAGATGCGAATGGGAATCCCCCTAACCGATGAAGACCGGATGCCATGGCTTGAATCGCTATGCTACGCCATAAAAGAATACTTGAATAACAAAAAGGGTCTGGTTCTTGGTTGTTCTGCTTTGAAGAAGGAATATAGAGAAATTCTTAGATCAGGTGATACTAGTTATAATTGGGGGACTTATGCAAGTGCTGTCAACTTCATTCTCTTGGATGCTCCTGCTGAAGTGCTAAGTGTTCGAGTGAATAAGAGAGCTGCAGAAGGAAAACATTATATGCCTGCATCGCTTTTGCAATCTCAGTTAGATTTGCTTAAGATTGATGAGCCTGAGGGAGTACTTAGAGTTGATGCTACTTTGAGACCCCAAGACATTGTAAACACCATTCTAAACATGGATCAGTTTCAGGGCTGTTTCAATCATGATTTTGTTGAATCTCTTTGA
Predicted protein sequences of Glyma.08g289900
>Glyma.08g289900.1.p sequence-type=predicted peptide transcript=Glyma.08g289900.1 locus=Glyma.08g289900 ID=Glyma.08g289900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MPSNDGIVIVVMGVSGAGKTTIGQMLEKELKYKYLDADDFHLESNKEKMRMGIPLTDEDRMPWLESLCYAIKEYLNNKKGLVLGCSALKKEYREILRSGDTSYNWGTYASAVNFILLDAPAEVLSVRVNKRAAEGKHYMPASLLQSQLDLLKIDEPEGVLRVDATLRPQDIVNTILNMDQFQGCFNHDFVESL*

>Glyma.08g289900.2.p sequence-type=predicted peptide transcript=Glyma.08g289900.2 locus=Glyma.08g289900 ID=Glyma.08g289900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLEKELKYKYLDADDFHLESNKEKMRMGIPLTDEDRMPWLESLCYAIKEYLNNKKGLVLGCSALKKEYREILRSGDTSYNWGTYASAVNFILLDAPAEVLSVRVNKRAAEGKHYMPASLLQSQLDLLKIDEPEGVLRVDATLRPQDIVNTILNMDQFQGCFNHDFVESL*






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