|
A previous version of this gene model can be found here:
Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
---|---|---|---|---|---|
AT5G14740.2 | AT | carbonic anhydrase 2 | JGI | N/A | IEA |
GO:0015976 | GO-bp | carbon utilization | EnsemblGenomes | N/A | IEA |
GO:0004089 | GO-mf | carbonate dehydratase activity | EnsemblGenomes | N/A | IEA |
GO:0004089 | GO-mf | carbonate dehydratase activity | JGI | N/A | IEA |
GO:0008270 | GO-mf | zinc ion binding | EnsemblGenomes | N/A | IEA |
GO:0008270 | GO-mf | zinc ion binding | JGI | N/A | IEA |
GO:0016829 | GO-mf | lyase activity | EnsemblGenomes | N/A | IEA |
KOG1578 | KOG | Predicted carbonic anhydrase involved in protection against oxidative damage | JGI | N/A | IEA |
PTHR11002 | Panther | CARBONIC ANHYDRASE | JGI | N/A | IEA |
PTHR11002:SF1 | Panther | JGI | N/A | IEA | |
PF00484 | PFAM | Carbonic anhydrase | JGI | N/A | IEA |
GN7V-57446 | SoyCyc9-rxn | carbonate dehydratase | Plant Metabolic Network | ISS |
Glyma.08g286700 not represented in the dataset |
Glyma.08g286700 not represented in the dataset |
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
Paralog | Evidence | Comments |
---|---|---|
Glyma.18g138400 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
Corresponding Name | Annotation Version | Evidence | Comments |
---|---|---|---|
Glyma08g39510 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.08g286700.1 sequence-type=CDS polypeptide=Glyma.08g286700.1.p locus=Glyma.08g286700 ID=Glyma.08g286700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCTGGAGGATCATACGAGGAAGCCATTGCAGCGTTGACGAAGCTTCTCAGCGAGAAAGCCGACCTGGGTGGTGTCGCCGCCGCAAAGATAAAACAGCTGACGGCGGAGCTGGATACCGCCACCGCAAACGGGTCGACGCCGTTTAACCCGGACGAGAGGATCCGAACCGGGTTCGCCCACTTCAAGAACGAGAAATACCAGAAGAACCCGGAATTATATGGCGAACTTGCCAAAGGCCAGAGTCCAAAGTTTATGGTTTTTGCTTGCTCAGACTCTCGAGTTTGCCCATCCCACATTCTGGATTTCAATCCGGGTGAAGCCTTTGTGGTCCGAAATATCGCCAACATGGTTCCACCATATGACAAGACCAAGTATTCAGGAACCGGGGCGGCCATTGAATATGCAGTCTTACATTTAAAGGTGGAGAATATTGTGGTCATTGGGCACAGCTGCTGTGGAGGTATAAAGGGCCTAATGTCTATCCCAGATGATGGGACCACTGCAAGTGAATTCATAGAGCACTGGGTCCAAATTTGCACTCCAGCAAAGTCCAAGGTTAAAACAGAAGCAAACACATTAGAATTCTCTGAGCAATGTACCAGCTGCGAGAAGGAAGCTGTGAATGTATCACTTGGGAACCTATTGACATATCGATTTGTGAGAGATGCAGTTGTGAAGAAAACTCTTGCCTTGAAAGGTGCACATTACAATTTCGTTAAGGGCACATTTGAGCTGTGGGATCTGGACTTGAAAATCTCTAACTCTGTATCCGTTTAA
>Glyma.08g286700.1.p sequence-type=predicted peptide transcript=Glyma.08g286700.1 locus=Glyma.08g286700 ID=Glyma.08g286700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MAGGSYEEAIAALTKLLSEKADLGGVAAAKIKQLTAELDTATANGSTPFNPDERIRTGFAHFKNEKYQKNPELYGELAKGQSPKFMVFACSDSRVCPSHILDFNPGEAFVVRNIANMVPPYDKTKYSGTGAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPDDGTTASEFIEHWVQICTPAKSKVKTEANTLEFSEQCTSCEKEAVNVSLGNLLTYRFVRDAVVKKTLALKGAHYNFVKGTFELWDLDLKISNSVSV*
Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||