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Report for Sequence Feature Glyma.08g286200

Feature Type:gene_model
Chromosome:Gm08
Start:39593360
stop:39596858
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.08g286200
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G60820.1AT N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein JGI N/AIEA
GO:0006508GO-bp proteolysis EnsemblGenomesN/AIEA
GO:0051603GO-bp proteolysis involved in cellular protein catabolic process EnsemblGenomesN/AIEA
GO:0051603GO-bp proteolysis involved in cellular protein catabolic process JGI N/AIEA
GO:0000502GO-cc proteasome complex EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0005737GO-cc cytoplasm EnsemblGenomesN/AIEA
GO:0005839GO-cc proteasome core complex EnsemblGenomesN/AIEA
GO:0005839GO-cc proteasome core complex JGI N/AIEA
GO:0004175GO-mf endopeptidase activity EnsemblGenomesN/AIEA
GO:0004298GO-mf threonine-type endopeptidase activity EnsemblGenomesN/AIEA
GO:0004298GO-mf threonine-type endopeptidase activity JGI N/AIEA
GO:0008233GO-mf peptidase activity EnsemblGenomesN/AIEA
GO:0016787GO-mf hydrolase activity EnsemblGenomesN/AIEA
KOG0179 KOG 20S proteasome, regulatory subunit beta type PSMB1/PRE7 JGI N/AIEA
KOG0180 KOG 20S proteasome, regulatory subunit beta type PSMB3/PUP3 JGI N/AIEA
PTHR11599Panther PROTEASOME SUBUNIT ALPHA/BETA JGI N/AIEA
PTHR11599:SF8Panther JGI N/AIEA
PF00227PFAM Proteasome subunit JGI N/AIEA

Expression Patterns of Glyma.08g286200
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.08g286200
ParalogEvidenceComments
Glyma.18g138900 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.08g286200 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma08g39420 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.08g286200
>Glyma.08g286200.2 sequence-type=transcript locus=Glyma.08g286200 ID=Glyma.08g286200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AGCGAAGACAGACAGATCTGAAGTGTGTAGAGTTAAAGACTGAGAGAGACGAAGCCAGAGAAAACCAAAAACCTTACTCTTTTTCACGCGACGCCCTAGTTCATttttcttctccgttctcttctctctctgttcttcactcactctcattcATTCACCATGACGAAACAACATGCCAATTGGTCTCCTTACGATAACAACGGAGGGTAAGATCATGTGTTGCGATTGCTGGAGCAGATTACTGCGTTATCGCCGCAGATACGAGAATGTCCACCGGTTACAACATCCTCACTCGCGATTACTCCAAAATCTCCCAACTGGCTGAGAAGTGTGTGATGGCTTCATCTGGCTTTCAAGCTGATGTCAAAGCTTTGCAGAAGGTTTTGTCTGCTAGGCATTTGATTTATCAGCATCAACACAACAAGCAAATGAGTTGCCCTGCGATGGCTCAGTTGCTCTCAAACACTCTTTATTACAAACGGTTCTTTCCTTATTATGCTTTCAATGTTTTGGGTGGCCTTGACAATGAAGGAAAGGGATGTGTCTTCACATATGATGCTGTTGGTTCTTATGAGAGGGTTGGATATAGCTCTCAGGGTTCTGGATCCACACTTATTATGCCATTTCTTGATAACCAGCTGAAGTCTCCTAGCCCACTCCTGTTACCTGCCCAGGATGCTGTTACTCCATTGTCTGAAGCAGAAGCAGTTGATCTGGTCAAAACTGTTTTTGCATCTGCAACTGAGAGAGATATATACACCGGAGATAAGGTTGAAATCGTCATCCTAAATGCCAGTGGTATTCATCGTGAATACATGGACCTAAGGAAAGACTAATGCTTTACAGGAAATTGTTGTTGGAGATACCTGTCTTGGATTGAGAATGTTTGAAATGCTTCTAAAATTTAAAATGACGTAGTGGGTTTTTCCCATGAGGCGAAATTAAGAATAGCATTTCCAGTGAAATTGCTTTGAACAAGTACTAGTCTGCTCACATTATAACTAGACTGCTTTCACTTAAATTTGCATTGGATTTTTGTCTGAGTCAATTTATTTATAGCTTTAGTGTGCATTTTCTATCCTATTCT

>Glyma.08g286200.3 sequence-type=transcript locus=Glyma.08g286200 ID=Glyma.08g286200.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
TTATTTATTGTTTCGCCTGACAGGGCTGAGAAGTGTGTGATGGCTTCATCTGGCTTTCAAGCTGATGTCAAAGCTTTGCAGAAGGTTTTGTCTGCTAGGCATTTGATTTATCAGCATCAACACAACAAGCAAATGAGTTGCCCTGCGATGGCTCAGTTGCTCTCAAACACTCTTTATTACAAACGGTTCTTTCCTTATTATGCTTTCAATGTTTTGGGTGGCCTTGACAATGAAGGAAAGGGATGTGTCTTCACATATGATGCTGTTGGTTCTTATGAGAGGGTTGGATATAGCTCTCAGGGTTCTGGATCCACACTTATTATGCCATTTCTTGATAACCAGCTGAAGTCTCCTAGCCCACTCCTGTTACCTGCCCAGGATGCTGTTACTCCATTGTCTGAAGCAGAAGCAGTTGATCTGGTCAAAACTGTTTTTGCATCTGCAACTGAGAGAGATATATACACCGGAGATAAGGTTGAAATCGTCATCCTAAATGCCAGTGGTATTCATCGTGAATACATGGACCTAAGGAAAGACTAATGCTTTACAGGAAATTGTTGTTGGAGATACCTGTCTTGGATTGAGAATGTTTGAAATGCTTCTAAAATTTAAAATGACGTAGTGGGTTTTTCCCATGAGGCGAAATTAAGAATAGCATTTCCAGTGAAATTGCTTTGAACAAGTACTAGTCTGCTCACATTATAACTAGACTGCTTTCACTTAAATTTGCATTGGATTTTTGTCTGAGTCAATTTATTTATAGCTTTAGTGTGCATTTTCTATCCTATTCT

>Glyma.08g286200.4 sequence-type=transcript locus=Glyma.08g286200 ID=Glyma.08g286200.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
TTTGAAGGCATTTTAGTAACATTAGACTCCTCTGCAATCATGATGGAAAGAACTGCAAATATTTATTCTACCAATCTATTCTCTTCAATTCATTTTTTTTCTAATTGCACAGTTTCACTTGCTTTTTTGCCTTGAAAATTTTCAAGCACATCTACCTAAATATTATCTGCATCATATTAAAATTCTAATTTCAAATTCAAATGTTTTGCCCGCTTTCACTATGACAGTTACAATCTTTTCCAGCATATTGGTGTTTGAAATTAATGACCAAGAAGCAGATATGGGTGGATATATGAAAGAATAGAACAGAAAATACTTCTAGATTTGTATAAAGTGATCAGTTTTAGAGTTGGATCTGTGTCCAATGAAGTCAAGAATCTTCATGGATTTGCATAAAGTTATCACAATCATTAAAAGTCAGAGAGAAAGGAGAAAGTACAATGTACATATGCTTGCCTGATGTGACACAGGGAATACATACATTATGATTTTCTGCCCAAGTAGTAACAACATAAATGGATTTATCAGCATCAACACAACAAGCAAATGAGTTGCCCTGCGATGGCTCAGTTGCTCTCAAACACTCTTTATTACAAACGGTTCTTTCCTTATTATGCTTTCAATGTTTTGGGTGGCCTTGACAATGAAGGAAAGGGATGTGTCTTCACATATGATGCTGTTGGTTCTTATGAGAGGGTTGGATATAGCTCTCAGGGTTCTGGATCCACACTTATTATGCCATTTCTTGATAACCAGCTGAAGTCTCCTAGCCCACTCCTGTTACCTGCCCAGGATGCTGTTACTCCATTGTCTGAAGCAGAAGCAGTTGATCTGGTCAAAACTGTTTTTGCATCTGCAACTGAGAGAGATATATACACCGGAGATAAGGTTGAAATCGTCATCCTAAATGCCAGTGGTATTCATCGTGAATACATGGACCTAAGGAAAGACTAATGCTTTACAGGAAATTGTTGTTGGAGATACCTGTCTTGGATTGAGAATGTTTGAAATGCTTCTAAAATTTAAAATGACGTAGTGGGTTTTTCCCATGAGGCGAAATTAAGAATAGCATTTCCAGTGAAATTGCTTTGAACAAGTACTAGTCTGCTCACATTATAACTAGACTGCTTTCACTTAAATTTGCATTGGATTTTTGTCTGAGTCAATTTATTTATAGCTTTAGTGTGCATTTTCTATCCTATTCT
Coding sequences of Glyma.08g286200
>Glyma.08g286200.1 sequence-type=CDS polypeptide=Glyma.08g286200.1.p locus=Glyma.08g286200 ID=Glyma.08g286200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGACGAAACAACATGCCAATTGGTCTCCTTACGATAACAACGGAGGATCATGTGTTGCGATTGCTGGAGCAGATTACTGCGTTATCGCCGCAGATACGAGAATGTCCACCGGTTACAACATCCTCACTCGCGATTACTCCAAAATCTCCCAACTGGCTGAGAAGTGTGTGATGGCTTCATCTGGCTTTCAAGCTGATGTCAAAGCTTTGCAGAAGGTTTTGTCTGCTAGGCATTTGATTTATCAGCATCAACACAACAAGCAAATGAGTTGCCCTGCGATGGCTCAGTTGCTCTCAAACACTCTTTATTACAAACGGTTCTTTCCTTATTATGCTTTCAATGTTTTGGGTGGCCTTGACAATGAAGGAAAGGGATGTGTCTTCACATATGATGCTGTTGGTTCTTATGAGAGGGTTGGATATAGCTCTCAGGGTTCTGGATCCACACTTATTATGCCATTTCTTGATAACCAGCTGAAGTCTCCTAGCCCACTCCTGTTACCTGCCCAGGATGCTGTTACTCCATTGTCTGAAGCAGAAGCAGTTGATCTGGTCAAAACTGTTTTTGCATCTGCAACTGAGAGAGATATATACACCGGAGATAAGGTTGAAATCGTCATCCTAAATGCCAGTGGTATTCATCGTGAATACATGGACCTAAGGAAAGACTAA

>Glyma.08g286200.2 sequence-type=CDS polypeptide=Glyma.08g286200.2.p locus=Glyma.08g286200 ID=Glyma.08g286200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCCACCGGTTACAACATCCTCACTCGCGATTACTCCAAAATCTCCCAACTGGCTGAGAAGTGTGTGATGGCTTCATCTGGCTTTCAAGCTGATGTCAAAGCTTTGCAGAAGGTTTTGTCTGCTAGGCATTTGATTTATCAGCATCAACACAACAAGCAAATGAGTTGCCCTGCGATGGCTCAGTTGCTCTCAAACACTCTTTATTACAAACGGTTCTTTCCTTATTATGCTTTCAATGTTTTGGGTGGCCTTGACAATGAAGGAAAGGGATGTGTCTTCACATATGATGCTGTTGGTTCTTATGAGAGGGTTGGATATAGCTCTCAGGGTTCTGGATCCACACTTATTATGCCATTTCTTGATAACCAGCTGAAGTCTCCTAGCCCACTCCTGTTACCTGCCCAGGATGCTGTTACTCCATTGTCTGAAGCAGAAGCAGTTGATCTGGTCAAAACTGTTTTTGCATCTGCAACTGAGAGAGATATATACACCGGAGATAAGGTTGAAATCGTCATCCTAAATGCCAGTGGTATTCATCGTGAATACATGGACCTAAGGAAAGACTAA

>Glyma.08g286200.3 sequence-type=CDS polypeptide=Glyma.08g286200.3.p locus=Glyma.08g286200 ID=Glyma.08g286200.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTTCATCTGGCTTTCAAGCTGATGTCAAAGCTTTGCAGAAGGTTTTGTCTGCTAGGCATTTGATTTATCAGCATCAACACAACAAGCAAATGAGTTGCCCTGCGATGGCTCAGTTGCTCTCAAACACTCTTTATTACAAACGGTTCTTTCCTTATTATGCTTTCAATGTTTTGGGTGGCCTTGACAATGAAGGAAAGGGATGTGTCTTCACATATGATGCTGTTGGTTCTTATGAGAGGGTTGGATATAGCTCTCAGGGTTCTGGATCCACACTTATTATGCCATTTCTTGATAACCAGCTGAAGTCTCCTAGCCCACTCCTGTTACCTGCCCAGGATGCTGTTACTCCATTGTCTGAAGCAGAAGCAGTTGATCTGGTCAAAACTGTTTTTGCATCTGCAACTGAGAGAGATATATACACCGGAGATAAGGTTGAAATCGTCATCCTAAATGCCAGTGGTATTCATCGTGAATACATGGACCTAAGGAAAGACTAA

>Glyma.08g286200.4 sequence-type=CDS polypeptide=Glyma.08g286200.4.p locus=Glyma.08g286200 ID=Glyma.08g286200.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAGTTGCCCTGCGATGGCTCAGTTGCTCTCAAACACTCTTTATTACAAACGGTTCTTTCCTTATTATGCTTTCAATGTTTTGGGTGGCCTTGACAATGAAGGAAAGGGATGTGTCTTCACATATGATGCTGTTGGTTCTTATGAGAGGGTTGGATATAGCTCTCAGGGTTCTGGATCCACACTTATTATGCCATTTCTTGATAACCAGCTGAAGTCTCCTAGCCCACTCCTGTTACCTGCCCAGGATGCTGTTACTCCATTGTCTGAAGCAGAAGCAGTTGATCTGGTCAAAACTGTTTTTGCATCTGCAACTGAGAGAGATATATACACCGGAGATAAGGTTGAAATCGTCATCCTAAATGCCAGTGGTATTCATCGTGAATACATGGACCTAAGGAAAGACTAA
Predicted protein sequences of Glyma.08g286200
>Glyma.08g286200.1.p sequence-type=predicted peptide transcript=Glyma.08g286200.1 locus=Glyma.08g286200 ID=Glyma.08g286200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MTKQHANWSPYDNNGGSCVAIAGADYCVIAADTRMSTGYNILTRDYSKISQLAEKCVMASSGFQADVKALQKVLSARHLIYQHQHNKQMSCPAMAQLLSNTLYYKRFFPYYAFNVLGGLDNEGKGCVFTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTVFASATERDIYTGDKVEIVILNASGIHREYMDLRKD*

>Glyma.08g286200.2.p sequence-type=predicted peptide transcript=Glyma.08g286200.2 locus=Glyma.08g286200 ID=Glyma.08g286200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSTGYNILTRDYSKISQLAEKCVMASSGFQADVKALQKVLSARHLIYQHQHNKQMSCPAMAQLLSNTLYYKRFFPYYAFNVLGGLDNEGKGCVFTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTVFASATERDIYTGDKVEIVILNASGIHREYMDLRKD*

>Glyma.08g286200.3.p sequence-type=predicted peptide transcript=Glyma.08g286200.3 locus=Glyma.08g286200 ID=Glyma.08g286200.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MASSGFQADVKALQKVLSARHLIYQHQHNKQMSCPAMAQLLSNTLYYKRFFPYYAFNVLGGLDNEGKGCVFTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTVFASATERDIYTGDKVEIVILNASGIHREYMDLRKD*

>Glyma.08g286200.4.p sequence-type=predicted peptide transcript=Glyma.08g286200.4 locus=Glyma.08g286200 ID=Glyma.08g286200.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSCPAMAQLLSNTLYYKRFFPYYAFNVLGGLDNEGKGCVFTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTVFASATERDIYTGDKVEIVILNASGIHREYMDLRKD*






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