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Report for Sequence Feature Glyma.08g283400

Feature Type:gene_model
Chromosome:Gm08
Start:38964625
stop:38975197
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.08g283400
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G60780.1AT Clathrin adaptor complexes medium subunit family protein JGI N/AIEA
GO:0006886GO-bp intracellular protein transport EnsemblGenomesN/AIEA
GO:0006886GO-bp intracellular protein transport JGI N/AIEA
GO:0015031GO-bp protein transport EnsemblGenomesN/AIEA
GO:0016192GO-bp vesicle-mediated transport EnsemblGenomesN/AIEA
GO:0016192GO-bp vesicle-mediated transport JGI N/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0030131GO-cc clathrin adaptor complex EnsemblGenomesN/AIEA
GO:0030131GO-cc clathrin adaptor complex JGI N/AIEA
GO:0005515GO-mf protein binding JGI N/AIEA
KOG0937 KOG Adaptor complexes medium subunit family JGI N/AIEA
PTHR11998Panther CLATHRIN COAT ASSEMBLY PROTEIN JGI N/AIEA
PTHR11998:SF11Panther AP-47 JGI N/AIEA
PF00928PFAM Adaptor complexes medium subunit family JGI N/AIEA
PF01217PFAM Clathrin adaptor complex small chain JGI N/AIEA

Expression Patterns of Glyma.08g283400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.08g283400
ParalogEvidenceComments
Glyma.18g143100 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.08g283400 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma08g39080 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.08g283400
>Glyma.08g283400.1 sequence-type=CDS polypeptide=Glyma.08g283400.1.p locus=Glyma.08g283400 ID=Glyma.08g283400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTGGGGCAGCCTCTGCTCTGTTCCTCCTTGACATCAAAGGCCGCGTCCTCATCTGGCGCGACTACCGCGGTGACGTCACCGCCGTCGAAGCTGAACGCTTCTTCACCAAACTCATCGAAAAAGAGGGGGATCCGCAGTCTCAAGATCCGGTTGTGTATGATAATGGTGTGACCTACTTGTTTATACAGCATAGCAATGTTTTCCTCATGATGGCTACCAGACAAAACTGCAATGCTGCTAGCCTCCTTTTCTTCCTACACCGTATCGTTGACGTGTTTAAGCATTATTTTGAAGAATTGGAAGAGGAGTCTCTTAGGGATAACTTTGTTGTTGTGTATGAATTACTTGATGAAATAATGGACTTTGGCTACCCGCAATACACTGAGGCAAAGATTCTTAGTGAGTTTATCAAGACGGATGCCTATAGAATGGAAGTTACACAGAGACCTCCCATGGCTGTGACAAATGCTGTATCCTGGCGCAGTGAAGGGATAAACTACAAGAAAAATGAGGTTTTCTTGGATGTGGTGGAGAGTGTTAACATACTTGTCAATAGCAATGGACAAATAATTAGGTCTGATGTTGTTGGGGCATTGAAGATGAGAACATATCTGAGTGGTATGCCTGAGTGTAAACTTGGATTAAATGATAGAGTATTATTAGAGGCACAAGGTAGAACAACCAAGGGAAAATCAATTGACTTGGAAGACATCAAATTTCATCAGTGTGTGCGTTTGGCCCGATTTGAGAATGATCGAACGATTTCATTTATCCCTCCTGATGGATCATTTGATTTAATGACATATAGGCTCAGTACACAGGTTAAGCCTTTAGTTTGGGTGGAAGCACAAGTTGAAAAACATTCAAAAAGCCGGATCGAGATTATGGTAAAAGCTAGGAGTCAATTTAAGGAACGCAGTACTGCCACAAATGTTGAGATTGAGTTGCCTGTTCCTGCTGATGCAACCAATCCAAATGTTCGGACTTCAATGGGATCTGCATCATATGCACCTGAAAAAGATGCATTAATCTGGAAAATAAGATCATTTCCTGGAGGAAAGGAGTACATGTTAAGGGCAGAGTTTCATCTTCCCAGTATAGTAGATGAGGAAGCAACTCCTGAGAGAAAAGCTCCTATACGTGTAAAATTTGAGATACCATATTTTACTGTGTCTGGGATACAGGTAAGATATTTGAAGATTATTGAGAAAAGTGGTTATCAGGCTCTTCCATGGGTGAGATACATAACAATGGCTGGAGAGTATGAACTGAGGCTCATTTGA
Predicted protein sequences of Glyma.08g283400
>Glyma.08g283400.1.p sequence-type=predicted peptide transcript=Glyma.08g283400.1 locus=Glyma.08g283400 ID=Glyma.08g283400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAGAASALFLLDIKGRVLIWRDYRGDVTAVEAERFFTKLIEKEGDPQSQDPVVYDNGVTYLFIQHSNVFLMMATRQNCNAASLLFFLHRIVDVFKHYFEELEEESLRDNFVVVYELLDEIMDFGYPQYTEAKILSEFIKTDAYRMEVTQRPPMAVTNAVSWRSEGINYKKNEVFLDVVESVNILVNSNGQIIRSDVVGALKMRTYLSGMPECKLGLNDRVLLEAQGRTTKGKSIDLEDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLSTQVKPLVWVEAQVEKHSKSRIEIMVKARSQFKERSTATNVEIELPVPADATNPNVRTSMGSASYAPEKDALIWKIRSFPGGKEYMLRAEFHLPSIVDEEATPERKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYQALPWVRYITMAGEYELRLI*






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