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Report for Sequence Feature Glyma.08g273300

Feature Type:gene_model
Chromosome:Gm08
Start:35939200
stop:35942979
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.08g273300
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G37880.1AT LisH/CRA/RING-U-box domains-containing protein JGI N/AIEA
GO:0016567GO-bp protein ubiquitination EnsemblGenomesN/AIEA
GO:0043161GO-bp proteasome-mediated ubiquitin-dependent protein catabolic process EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0005737GO-cc cytoplasm EnsemblGenomesN/AIEA
GO:0034657GO-cc GID complex EnsemblGenomesN/AIEA
GO:0004842GO-mf ubiquitin-protein transferase activity EnsemblGenomesN/AIEA
GO:0046872GO-mf metal ion binding EnsemblGenomesN/AIEA
KOG2817 KOG Predicted E3 ubiquitin ligase JGI N/AIEA
PTHR12170Panther MACROPHAGE ERYTHROBLAST ATTACHER-RELATED JGI N/AIEA
PTHR12170:SF3Panther REQUIRED FOR MEIOTIC NUCLEAR DIVISION 5 HOMOLOG B (S. CEREVISIAE) JGI N/AIEA
PF10607PFAM CTLH/CRA C-terminal to LisH motif domain JGI N/AIEA

Expression Patterns of Glyma.08g273300
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.08g273300
ParalogEvidenceComments
Glyma.01g097700 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.08g273300 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma08g37050 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.08g273300
>Glyma.08g273300.1 sequence-type=CDS polypeptide=Glyma.08g273300.1.p locus=Glyma.08g273300 ID=Glyma.08g273300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAGCTGAGTGCTATAAAAGACGCTTTTGACCGTGTTACTAAGAAGCAAAAGTTATCTTGTTCCAAGACTCAAGAAGCAATTGATCTGATCAGACAGGAAATTGAGAGTGTTTTAGACACGCTGCAGTCAGTGAATAACACTGACCATGAACTTGATTATAAAACTGTCCTGAATGAGCTTAAGGCCAGTTTACTTAAAATTGCTCCACTTAGTCAAATGGAAGGTACACAGAAGGAGCTAAATTTAGCACTCACCAAGTATGGGAAGCTTCATGAGAAACATTTTAACCCTGATATATCCAAGGCTTACAGAAATGTCGACATTGATATACATACATTAAACCAAATAATTGCCAACCATTTTTATCGCCAGGGCCTTTTTGAGATAGGGGACCATTTTATGAGTGTGGTTGGAGAGCTAGAATCCGCAGCCATTATGAAATCTCCATTTCTGGAAATGTATCAAATACTTGAAGCCATGCAGAATCTGAACCTAGAGCCAGCCCTCAACTGGGCTGCCACTAATGGTGACAAACTTGCTCAAAGTGGATCTGATATTGTGTTGAAACTTAACTCCATGCAATTTGTGAAAATACTTCAAAATGGAAGTAGAGAGGAAGCTCTTCATTATGCTCGAACACACCTTTCTCCTTTTGCTACCAGTCACATGACTGATATTCAGAAACTTATGGGCTGTCTTCTATGGACGGGAAAGCTTGATCGATCTCCTTACCATGCATTACTATCAGCATCTAACTGGGATAAGTTGGCCGAGGAACTTAAAAGGCAGTTCTGCAATCTTTTGGGACAGTCGTATAATAGTCCATTGAGCGTGACTGTAGCAGCAGGGGTCCAGGTTTTGCCACCTCTCCTCAAATTTATGAATGTCATGGCAGGGAAGAAGCATGAATGGCAGTCTATGAACCAGTTACCGGTGCTGGTTGAGTTGGACCGTGAGTTCCAGTTCCATTCTATTTTCGTTTGTCCTGTCTCCAAGGAACAAGCAACTGAGGATAACCCTCCGATGTTAATGTCCTGTGGCCATGTCCTCTGCAAGCAGTCTATCTTGAAGATGTCCAAGAATAGCACAAAAATGTTTAAGTGCCCATATTGTCCCTTTGATATTGATGCAGCACAGTGCAAGCAGCTATATTTCTGA
Predicted protein sequences of Glyma.08g273300
>Glyma.08g273300.1.p sequence-type=predicted peptide transcript=Glyma.08g273300.1 locus=Glyma.08g273300 ID=Glyma.08g273300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MELSAIKDAFDRVTKKQKLSCSKTQEAIDLIRQEIESVLDTLQSVNNTDHELDYKTVLNELKASLLKIAPLSQMEGTQKELNLALTKYGKLHEKHFNPDISKAYRNVDIDIHTLNQIIANHFYRQGLFEIGDHFMSVVGELESAAIMKSPFLEMYQILEAMQNLNLEPALNWAATNGDKLAQSGSDIVLKLNSMQFVKILQNGSREEALHYARTHLSPFATSHMTDIQKLMGCLLWTGKLDRSPYHALLSASNWDKLAEELKRQFCNLLGQSYNSPLSVTVAAGVQVLPPLLKFMNVMAGKKHEWQSMNQLPVLVELDREFQFHSIFVCPVSKEQATEDNPPMLMSCGHVLCKQSILKMSKNSTKMFKCPYCPFDIDAAQCKQLYF*






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