Glyma.08g260400

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Report for Sequence Feature Glyma.08g260400

Feature Type:	gene_model
Chromosome:	Gm08
Start:	23848825
stop:	23851235
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.08g260400

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G13330.1	AT	Arabidopsis Hop2 homolog	JGI	N/A	IEA
GO:0007131	GO-bp	reciprocal meiotic recombination	EnsemblGenomes	N/A	IEA
KOG4603	KOG	TBP-1 interacting protein	JGI	N/A	IEA
PTHR15938	Panther	TBP-1 INTERACTING PROTEIN	JGI	N/A	IEA
PF07106	PFAM	Tat binding protein 1(TBP-1)-interacting protein (TBPIP)	JGI	N/A	IEA

Expression Patterns of Glyma.08g260400

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.08g260400 not represented in the dataset	Glyma.08g260400 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Gene model name correspondences to Glyma.08g260400 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma08g29460	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.08g260400

Limit To All Plant Sequences

>Glyma.08g260400.2 sequence-type=transcript locus=Glyma.08g260400 ID=Glyma.08g260400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TCACCTCACGTGGCACACCTTTGTTCCCTTTGCCTTCAATTATCATGCATGCTAACTTCAATTCTGTACCACATCAGCAACACAATTGAAATTAAAGTTGAAATTAAAAAATGCCCCAATTTTCTGAGTTGAATGGTAGTTAAGCAAAATAGGCCGGTGAATGCACAGAACGTGGCGGATGCATTGCAAAAGTTCAATCTCAAGAAAGCGGCGATTCAGAAAGCGTTGGATAATCTGGCAGATGGAGGTCGAATTTCGTTCAAGGAGTATGGGAAGCAGAAGATATACCTTGCGCGGCAAGATCAATTTCAAATTCCCAACACTGAAGAGCTGAATCAGATGAAGGAACAGAATGCTGAGCTGCAAAAACAGCTGGAGGATCAGAAAAAGGCTACTAGTGAGGTTGAAGCCGAAATTAAGTCATTGCAATCAAATTTGACACTGGAACAGATATTTGAAAGAGAAGTGAATCTGAGATTGGAGGTTCAAGAAATGGAGGAAAAATTGACCAAGTTACGTGGAGGTGTTACTCTGGTGAAGCCAGAAGAACGAAAGGCAGTTGAGAATATGTTGTCAGAGATGATAGGTCAGTGGAGAAAGCGGAAAAGAATGTTCAAGGATTTATGGGATACCCTCACTGAGAACTCACCTAAGGATCCCAAAGAATTTAAGGAGGAGCTTGGAATAGAATATGATGAAGATGTTGGGGTAAGTTTGCAGTCATACAATGACCTGATTCAACAGGGTAAGAAGAGGCCTAGGGGGAAGTGATGTATTTATTGGAATCAACAAATTAGGAATACAGATTGTTTGGTGTTCTGACCTCGGTGAAAATTACTGCAAATTACATATAGCCTTATGCATTAAGTTTTCACAATTCTGACTTAGTTTGGGTTTATTCCCTAAAATTACTAGCCTGGCTCATCACTGGAGCATAGTCTCAATGCAATATTATTGTTAATATCTCTTTGGGCGCAGGCATTGGTCCTATTTACATTGCTTACTTTTCTAGTGCTCATGTTTCAAGGACAAACTTTATCGTAATTCTTGAACTTCATATCTCCTGAAGAATGATTATTGACATCAACAGATTCTAGGGAAGAAAAAAAACTAACTCTAAGCAGAAAGCACTTATATTCCATTTTCTGGAACCCTGCATGCTCCCC

>Glyma.08g260400.3 sequence-type=transcript locus=Glyma.08g260400 ID=Glyma.08g260400.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
TTTTACTTCTTCAGAAAGGCCTGAAAATGTTGATTTGTTGTTTTCAGTTTTGGCAAAATAGGCCGGTGAATGCACAGAACGTGGCGGATGCATTGCAAAAGTTCAATCTCAAGAAAGCGGCGATTCAGAAAGCGTTGGATAATCTGGCAGATGGAGGTCGAATTTCGTTCAAGGAGTATGGGAAGCAGAAGATATACCTTGCGCGGCAAGATCAATTTCAAATTCCCAACACTGAAGAGCTGAATCAGATGAAGGAACAGAATGCTGAGCTGCAAAAACAGCTGGAGGATCAGAAAAAGGCTACTAGTGAGGTTGAAGCCGAAATTAAGTCATTGCAATCAAATTTGACACTGGAACAGATATTTGAAAGAGAAGTGAATCTGAGATTGGAGGTTCAAGAAATGGAGGAAAAATTGACCAAGTTACGTGGAGGTGTTACTCTGGTGAAGCCAGAAGAACGAAAGGCAGTTGAGAATATGTTGTCAGAGATGATAGGTCAGTGGAGAAAGCGGAAAAGAATGTTCAAGGATTTATGGGATACCCTCACTGAGAACTCACCTAAGGATCCCAAAGAATTTAAGGAGGAGCTTGGAATAGAATATGATGAAGATGTTGGGGTAAGTTTGCAGTCATACAATGACCTGATTCAACAGGGTAAGAAGAGGCCTAGGGGGAAGTGATGTATTTATTGGAATCAACAAATTAGGAATACAGATTGTTTGGTGTTCTGACCTCGGTGAAAATTACTGCAAATTACATATAGCCTTATGCATTAAGTTTTCACAATTCTGACTTAGTTTGGGTTTATTCCCTAAAATTACTAGCCTGGCTCATCACTGGAGCATAGTCTCAATGCAATATTATTGTTAATATCTCTTTGGGCGCAGGCATTGGTCCTATTTACATTGCTTACTTTTCTAGTGCTCATGTTTCAAGGACAAACTTTATCGTAATTCTTGAACTTCATATCTCCTGAAGAATGATTATTGACATCAACAGATTCTAGGGAAGAAAAAAAACTAACTCTAAGCAGAAAGCACTTATATTCCATTTTCTGGAACCCTGCATGCTCCCC

Coding sequences of Glyma.08g260400

Limit To All Plant Sequences

>Glyma.08g260400.1 sequence-type=CDS polypeptide=Glyma.08g260400.1.p locus=Glyma.08g260400 ID=Glyma.08g260400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCACCAAAATCCGATAGCGCCGAAGCGATCGTGTTAAACTTCGTCAACGAGCAAAATAGGCCGGTGAATGCACAGAACGTGGCGGATGCATTGCAAAAGTTCAATCTCAAGAAAGCGGCGATTCAGAAAGCGTTGGATAATCTGGCAGATGGAGGTCGAATTTCGTTCAAGGAGTATGGGAAGCAGAAGATATACCTTGCGCGGCAAGATCAATTTCAAATTCCCAACACTGAAGAGCTGAATCAGATGAAGGAACAGAATGCTGAGCTGCAAAAACAGCTGGAGGATCAGAAAAAGGCTACTAGTGAGGTTGAAGCCGAAATTAAGTCATTGCAATCAAATTTGACACTGGAACAGATATTTGAAAGAGAAGTGAATCTGAGATTGGAGGTTCAAGAAATGGAGGAAAAATTGACCAAGTTACGTGGAGGTGTTACTCTGGTGAAGCCAGAAGAACGAAAGGCAGTTGAGAATATGTTGTCAGAGATGATAGGTCAGTGGAGAAAGCGGAAAAGAATGTTCAAGGATTTATGGGATACCCTCACTGAGAACTCACCTAAGGATCCCAAAGAATTTAAGGAGGAGCTTGGAATAGAATATGATGAAGATGTTGGGGTAAGTTTGCAGTCATACAATGACCTGATTCAACAGGGTAAGAAGAGGCCTAGGGGGAAGTGA

>Glyma.08g260400.2 sequence-type=CDS polypeptide=Glyma.08g260400.2.p locus=Glyma.08g260400 ID=Glyma.08g260400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGTAGTTAAGCAAAATAGGCCGGTGAATGCACAGAACGTGGCGGATGCATTGCAAAAGTTCAATCTCAAGAAAGCGGCGATTCAGAAAGCGTTGGATAATCTGGCAGATGGAGGTCGAATTTCGTTCAAGGAGTATGGGAAGCAGAAGATATACCTTGCGCGGCAAGATCAATTTCAAATTCCCAACACTGAAGAGCTGAATCAGATGAAGGAACAGAATGCTGAGCTGCAAAAACAGCTGGAGGATCAGAAAAAGGCTACTAGTGAGGTTGAAGCCGAAATTAAGTCATTGCAATCAAATTTGACACTGGAACAGATATTTGAAAGAGAAGTGAATCTGAGATTGGAGGTTCAAGAAATGGAGGAAAAATTGACCAAGTTACGTGGAGGTGTTACTCTGGTGAAGCCAGAAGAACGAAAGGCAGTTGAGAATATGTTGTCAGAGATGATAGGTCAGTGGAGAAAGCGGAAAAGAATGTTCAAGGATTTATGGGATACCCTCACTGAGAACTCACCTAAGGATCCCAAAGAATTTAAGGAGGAGCTTGGAATAGAATATGATGAAGATGTTGGGGTAAGTTTGCAGTCATACAATGACCTGATTCAACAGGGTAAGAAGAGGCCTAGGGGGAAGTGA

>Glyma.08g260400.3 sequence-type=CDS polypeptide=Glyma.08g260400.3.p locus=Glyma.08g260400 ID=Glyma.08g260400.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTTGATTTGTTGTTTTCAGTTTTGGCAAAATAGGCCGGTGAATGCACAGAACGTGGCGGATGCATTGCAAAAGTTCAATCTCAAGAAAGCGGCGATTCAGAAAGCGTTGGATAATCTGGCAGATGGAGGTCGAATTTCGTTCAAGGAGTATGGGAAGCAGAAGATATACCTTGCGCGGCAAGATCAATTTCAAATTCCCAACACTGAAGAGCTGAATCAGATGAAGGAACAGAATGCTGAGCTGCAAAAACAGCTGGAGGATCAGAAAAAGGCTACTAGTGAGGTTGAAGCCGAAATTAAGTCATTGCAATCAAATTTGACACTGGAACAGATATTTGAAAGAGAAGTGAATCTGAGATTGGAGGTTCAAGAAATGGAGGAAAAATTGACCAAGTTACGTGGAGGTGTTACTCTGGTGAAGCCAGAAGAACGAAAGGCAGTTGAGAATATGTTGTCAGAGATGATAGGTCAGTGGAGAAAGCGGAAAAGAATGTTCAAGGATTTATGGGATACCCTCACTGAGAACTCACCTAAGGATCCCAAAGAATTTAAGGAGGAGCTTGGAATAGAATATGATGAAGATGTTGGGGTAAGTTTGCAGTCATACAATGACCTGATTCAACAGGGTAAGAAGAGGCCTAGGGGGAAGTGA

Predicted protein sequences of Glyma.08g260400

Limit To All Plant Sequences

>Glyma.08g260400.1.p sequence-type=predicted peptide transcript=Glyma.08g260400.1 locus=Glyma.08g260400 ID=Glyma.08g260400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAPKSDSAEAIVLNFVNEQNRPVNAQNVADALQKFNLKKAAIQKALDNLADGGRISFKEYGKQKIYLARQDQFQIPNTEELNQMKEQNAELQKQLEDQKKATSEVEAEIKSLQSNLTLEQIFEREVNLRLEVQEMEEKLTKLRGGVTLVKPEERKAVENMLSEMIGQWRKRKRMFKDLWDTLTENSPKDPKEFKEELGIEYDEDVGVSLQSYNDLIQQGKKRPRGK*

>Glyma.08g260400.2.p sequence-type=predicted peptide transcript=Glyma.08g260400.2 locus=Glyma.08g260400 ID=Glyma.08g260400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MVVKQNRPVNAQNVADALQKFNLKKAAIQKALDNLADGGRISFKEYGKQKIYLARQDQFQIPNTEELNQMKEQNAELQKQLEDQKKATSEVEAEIKSLQSNLTLEQIFEREVNLRLEVQEMEEKLTKLRGGVTLVKPEERKAVENMLSEMIGQWRKRKRMFKDLWDTLTENSPKDPKEFKEELGIEYDEDVGVSLQSYNDLIQQGKKRPRGK*

>Glyma.08g260400.3.p sequence-type=predicted peptide transcript=Glyma.08g260400.3 locus=Glyma.08g260400 ID=Glyma.08g260400.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLICCFQFWQNRPVNAQNVADALQKFNLKKAAIQKALDNLADGGRISFKEYGKQKIYLARQDQFQIPNTEELNQMKEQNAELQKQLEDQKKATSEVEAEIKSLQSNLTLEQIFEREVNLRLEVQEMEEKLTKLRGGVTLVKPEERKAVENMLSEMIGQWRKRKRMFKDLWDTLTENSPKDPKEFKEELGIEYDEDVGVSLQSYNDLIQQGKKRPRGK*

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