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Report for Sequence Feature Glyma.08g259800

Feature Type:gene_model
Chromosome:Gm08
Start:23445751
stop:23451765
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.08g259800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G48360.2AT zinc ion binding;nucleic acid binding;hydrolases, acting on acid anhydrides, in phosphorus-containing anhydrides JGI N/AIEA
GO:0036297GO-bp interstrand cross-link repair EnsemblGenomesN/AIEA
GO:0090305GO-bp nucleic acid phosphodiester bond hydrolysis EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0003676GO-mf nucleic acid binding EnsemblGenomesN/AIEA
GO:0003676GO-mf nucleic acid binding JGI N/AIEA
GO:0004518GO-mf nuclease activity EnsemblGenomesN/AIEA
GO:0008270GO-mf zinc ion binding EnsemblGenomesN/AIEA
GO:0008270GO-mf zinc ion binding JGI N/AIEA
GO:0008409GO-mf 5'-3' exonuclease activity EnsemblGenomesN/AIEA
GO:0016788GO-mf hydrolase activity, acting on ester bonds EnsemblGenomesN/AIEA
GO:0016788GO-mf hydrolase activity, acting on ester bonds JGI N/AIEA
GO:0016818GO-mf hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides EnsemblGenomesN/AIEA
GO:0016818GO-mf hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides JGI N/AIEA
GO:0017108GO-mf 5'-flap endonuclease activity EnsemblGenomesN/AIEA
GO:0070336GO-mf flap-structured DNA binding EnsemblGenomesN/AIEA
KOG2143 KOG Uncharacterized conserved protein JGI N/AIEA
PTHR15749Panther FAMILY NOT NAMED JGI N/AIEA
PTHR15749:SF6Panther JGI N/AIEA
PF08774PFAM VRR-NUC domain JGI N/AIEA
PF08797PFAM HIRAN domain JGI N/AIEA

Expression Patterns of Glyma.08g259800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.08g259800
ParalogEvidenceComments
Glyma.18g283900 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.08g259800 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma08g29160 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.08g259800
>Glyma.08g259800.1 sequence-type=CDS polypeptide=Glyma.08g259800.1.p locus=Glyma.08g259800 ID=Glyma.08g259800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGTCCTTAGCGGCAGAGAAAGCTTGATTCGATTAATCGGCAAACGGAGACGCTTCCTTCCCAATCGCCACTCTATCCTCTCCGATCCCAACCCTAACCCTAACCCTAACCCGGCTGTTGAACAACCACTGCAACGACATGCATGTCTCTCTCAATCAACACCAGCAACAAAACGAAAGTTCTCCCAACGCACCCTCCTTCAGTTAAACTTCACCCTATCCAATTCCAAACCCAAATTTCACAATCTCACTCACGACAGTAACACTTCTCCCGTTCCGCCGCCCCAGCACAACGAGTCTGAAGAAGAAGAACAAGTCCCTGAAGCTCACGAGACCGATCTTGATTCTACAATTAGTACCACTTCCTCATCTTCCTTGCCATCAAACAATGGGGTGCCTGGCATCACGCTTGAAACATTCATTGTTGGCCGTAAATACACTGATAATCCCGAAGAAATATGTGCTGGTACTGCCATCTCTCTTTTGAGGGACCCTCAAAATGTTAAGGACCTCAATGCCATTAAGGTTGTTTCTGTAGATGCTGTGTGCTACAAGTCATTAGGTTTTATCCCCCATGAGCTAGCACAATGCCTATCACCTCTTATTGACAACTATGGCCTTGGATTTCAGGGACACGTTACTTCTGTTCCAAAACATTCTCTTGATATTGTTCCAATTCAGATTACGTGCCACAGAACATCAGATGGTGAAAGCAAATATGCTGACGAGACCTTTAAATGCTTATGGAAAAATGCTCAATGTGTTGTTGAATTTGCTAGCAGGAGTCCTCCTTCATCTGTAAAGTATCAGCTGAATTTTTGTCTTATGCTACTAGAAGGACCTTGGTTTCACGTGTCTAGTATATCATATCCTGAAATAGTGGATACTCAAAAGGCAGTCAAGGGCCTAGCTGAGAATGAATACATACATTCTATTGAAGATGCAAATCAACCATGTGAGAGTAATGTGAATGATATCTTGAATGTCCTCAGCGTCTCTGAGTTGCATGAAATTTGGTGCATTTTGCTTAAAAAGAGTGGCGGTCACCAGATGAAGAAGCAGCATCTGATTTCATCTATTCTTTTTACTGGTGCTAGCGTACTATGGCCACAACTATCAACTATGATTTTGGATAGAACTGTTTTCTGTATTAGGATTTCTTCGAAAGCTGAATCTCTTATGTGGCGTATTGAGAGACTTTTCTTCTTAAATGGAGAACAGGATCTCTCGTCCTTTCTACTTGTTGATATGGGAAAAATAGTGTATCCAGCTTACAACTGCATAATATCAGAACCAATTTTCTCAAATCGCAATAATCTGCTCTCTTATGAAGAGGCCATTGAAGTTGCACAAATTATGGATGAAGCTCTTGATGCAAACAAAACTGACGTGGTATTAAGGTGCATAAAGATAGCTGAATCCTGTGTATCTACTGATTTTCCCATCCAGTGCTCAACTTCTGAATCAGTATCTTCAATTCGTCGTGTATTTACAGCATCATGGGTATACTCCAAAGTGGTCACAGTAGGGATTTCCTTCCTTGAGCGGGAGCGCAGGTACATTGATGCTATTAACTTACTCAAATGGCTGCTAAATGTTTTCACTTGCGATGTAAAAAGAGGATATTGGACACTGAGGTTATCGGTTGACTTGGAGTACCTGGGCTGCACTAATGAGAGCCTTCAAATAGCTGAAAATGGGTTGCTGGATCCATGGATACGTGCTGGTTCAAGAATGGCACTGCAAAGGCGGGTTCTTCACCTAGGAAAACAACCAAGGCACTGGAATGTTCCTAGTTTTTCTAGACCATTGAATTCTGAATTGGGAGAAAAGAATAGGTACTACAATGAAGAGGGGAAGCAATGTGGAGTGGAAGAACTTGCTTTGCATTACTATGCAAGGGATGGAGGTGGATGGCTAGGTGTCCATGCAGAGAGTGGCATATGGTTAACCATTTTTGGGCTTCTTATGTGGGATGTCATATATGCTGATGTGCCAAATGTCTTCTATACTAGATTTCAGAATGCTCCTTTAGATTTCGGTACTGATAGCTTTTATACTCAAATATGTGATGGCATGGCTGAGGAGTTTCTTATTAAGTCATGGGAAACACATATCGGAACAGCATGTAGAGGAGTTAATTGGGACTGCCATCCTTTAGATGAGCTTCATGCTATTGTTACTTGTGTTGGGGGAATTTGTTTGGCATCTCTCTGCAAACTTCTGGCTCAAGACTACCGGAGCTGGTCTAGTGGAATGCCAGATTTGCTGCTATGGCGTTTCCATGGAGAATACAGCGGTGAAGCCAAGCTTGTTGAAGTGAAAGGCCCCAAGGACCGACTCTCTGAGCAGCAGAGAGCATGGCTATTGCTGCTTATGGATAGTGGATTTACGATTGAGGTTTGCAAAGTGAAACCTTTGTAG
Predicted protein sequences of Glyma.08g259800
>Glyma.08g259800.1.p sequence-type=predicted peptide transcript=Glyma.08g259800.1 locus=Glyma.08g259800 ID=Glyma.08g259800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MVLSGRESLIRLIGKRRRFLPNRHSILSDPNPNPNPNPAVEQPLQRHACLSQSTPATKRKFSQRTLLQLNFTLSNSKPKFHNLTHDSNTSPVPPPQHNESEEEEQVPEAHETDLDSTISTTSSSSLPSNNGVPGITLETFIVGRKYTDNPEEICAGTAISLLRDPQNVKDLNAIKVVSVDAVCYKSLGFIPHELAQCLSPLIDNYGLGFQGHVTSVPKHSLDIVPIQITCHRTSDGESKYADETFKCLWKNAQCVVEFASRSPPSSVKYQLNFCLMLLEGPWFHVSSISYPEIVDTQKAVKGLAENEYIHSIEDANQPCESNVNDILNVLSVSELHEIWCILLKKSGGHQMKKQHLISSILFTGASVLWPQLSTMILDRTVFCIRISSKAESLMWRIERLFFLNGEQDLSSFLLVDMGKIVYPAYNCIISEPIFSNRNNLLSYEEAIEVAQIMDEALDANKTDVVLRCIKIAESCVSTDFPIQCSTSESVSSIRRVFTASWVYSKVVTVGISFLERERRYIDAINLLKWLLNVFTCDVKRGYWTLRLSVDLEYLGCTNESLQIAENGLLDPWIRAGSRMALQRRVLHLGKQPRHWNVPSFSRPLNSELGEKNRYYNEEGKQCGVEELALHYYARDGGGWLGVHAESGIWLTIFGLLMWDVIYADVPNVFYTRFQNAPLDFGTDSFYTQICDGMAEEFLIKSWETHIGTACRGVNWDCHPLDELHAIVTCVGGICLASLCKLLAQDYRSWSSGMPDLLLWRFHGEYSGEAKLVEVKGPKDRLSEQQRAWLLLLMDSGFTIEVCKVKPL*






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