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Report for Sequence Feature Glyma.08g250800

Feature Type:gene_model
Chromosome:Gm08
Start:21975176
stop:21987424
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.08g250800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G60910.1AT AGAMOUS-like 8 JGI N/AIEA
GO:0006351GO-bp transcription, DNA-templated EnsemblGenomesN/AIEA
GO:0006355GO-bp regulation of transcription, DNA-templated EnsemblGenomesN/AIEA
GO:0006355GO-bp regulation of transcription, DNA-templated JGI N/AIEA
GO:0045944GO-bp positive regulation of transcription by RNA polymerase II EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus JGI N/AIEA
GO:0000977GO-mf RNA polymerase II regulatory region sequence-specific DNA binding EnsemblGenomesN/AIEA
GO:0003677GO-mf DNA binding EnsemblGenomesN/AIEA
GO:0003677GO-mf DNA binding JGI N/AIEA
GO:0003700GO-mf DNA binding transcription factor activity EnsemblGenomesN/AIEA
GO:0003700GO-mf sequence-specific DNA binding transcription factor activity JGI N/AIEA
GO:0046983GO-mf protein dimerization activity EnsemblGenomesN/AIEA
GO:0046983GO-mf protein dimerization activity JGI N/AIEA
KOG0014 KOG MADS box transcription factor JGI N/AIEA
PTHR11945Panther MADS BOX PROTEIN JGI N/AIEA
PTHR11945:SF19Panther JGI N/AIEA
PF00319PFAM SRF-type transcription factor (DNA-binding and dimerisation domain) JGI N/AIEA
PF01486PFAM K-box region JGI N/AIEA

Proteins Associated with Glyma.08g250800
LocusGene SymbolProtein Name
AP1c Apetella 1 gene c

Expression Patterns of Glyma.08g250800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.08g250800
ParalogEvidenceComments
Glyma.18g273600 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.08g250800 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma08g27680 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.08g250800
>Glyma.08g250800.2 sequence-type=transcript locus=Glyma.08g250800 ID=Glyma.08g250800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GTTTTGCTTTCATGTTCCTTTTTTATTTTTCTCTTTCTCAGTCTTCGTTTGCTCAGAATTGCTAGTTACGTTGGAAAATTAAGCAAAAGAAGATGGGAAGGGGTAGGGTTCAGCTGAAACGGATCGAGAACAAAACTAGCCAGCAAGTGACGTTTTCCAAGCGTAGATCGGGACTTCTCAAGAAAGCCAACGAAATCTCTGTGCTATGTGATGCTCAAGTTGCTTTGATTATGTTCTCTACCAAAGGAAAACTTTTTGAGTATTCCTCTGAACGCAGCATGGAAGACGTCCTGGAACGTTACGAGAGATATACACATACAGCACTTACTGGAGCTAATAACAATGAATCACAGGGAAATTGGTCTTTCGAATATATCAAGCTCACCGCCAAAGTTGAAGTCTTGGACAGGAACGTAAGGAATTTCTTGGGAAATGATCTGGATCCCTTGAGTTTGAAAGAGCTTCAGAGTTTGGAGCAGCAGCTTGACACAGCTCTGAAGCGCATCCGAACAAGAAAGAATCAAGTTATGAATGAATCCATCTCAGACCTGCATAAAAGGATGAAGGAGAAAGCGAAAACAGTGACTGAAGGTCCACATACTGGCCCAGAAACTCTAGGCCCAAATTCATCGACCCTTAACTTAACTTCTCCACAGCTACCACCACCACCACAAAGACTGGTTCCTTCTCTAACTCTCTGTGAGACATTCCAAGGAAGAGCATTGGTGGAAGAAACGGGAAAGGCTCAAACAGTCCCTAGTGGCAATTCTCTCATCCCACCATGGATGCTTCATATCTGACTAGTTAGGCTGGCATGATTCTGCCAAGTATGTGACATGTGATATTATGACAAAGGCTCAACTATATATATATGTTAGAACTTAGAATAGCCAATTATATGCCGATCGAGCTTAATAACTGCTCAAACTTCTCGCATGAACTGTGCCCTTCACTTTGAAATCAATGGTATTAAGCAGTTATTTTGACAAATGG
Coding sequences of Glyma.08g250800
>Glyma.08g250800.1 sequence-type=CDS polypeptide=Glyma.08g250800.1.p locus=Glyma.08g250800 ID=Glyma.08g250800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGAAGGGGTAGGGTTCAGCTGAAACGGATCGAGAACAAAACTAGCCAGCAAGTGACGTTTTCCAAGCGTAGATCGGGACTTCTCAAGAAAGCCAACGAAATCTCTGTGCTATGTGATGCTCAAGTTGCTTTGATTATGTTCTCTACCAAAGGAAAACTTTTTGAGTATTCCTCTGAACGCAGCATGGAAGACGTCCTGGAACGTTACGAGAGATATACACATACAGCACTTACTGGAGCTAATAACAATGAATCACAGGGAAATTGGTCTTTCGAATATATCAAGCTCACCGCCAAAGTTGAAGTCTTGGACAGGAACGTAAGGAATTTCTTGGGAAATGATCTGGATCCCTTGAGTTTGAAAGAGCTTCAGAGTTTGGAGCAGCAGCTTGACACAGCTCTGAAGCGCATCCGAACAAGAAAGAATCAAGTTATGAATGAATCCATCTCAGACCTGCATAAAAGGGCAAGGACATTACAAGAGCAAAACAGCAAGCTAGCAAAGATGAAGGAGAAAGCGAAAACAGTGACTGAAGGTCCACATACTGGCCCAGAAACTCTAGGCCCAAATTCATCGACCCTTAACTTAACTTCTCCACAGCTACCACCACCACCACAAAGACTGGTTCCTTCTCTAACTCTCTGTGAGACATTCCAAGGAAGAGCATTGGTGGAAGAAACGGGAAAGGCTCAAACAGTCCCTAGTGGCAATTCTCTCATCCCACCATGGATGCTTCATATCTGA

>Glyma.08g250800.2 sequence-type=CDS polypeptide=Glyma.08g250800.2.p locus=Glyma.08g250800 ID=Glyma.08g250800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGAAGGGGTAGGGTTCAGCTGAAACGGATCGAGAACAAAACTAGCCAGCAAGTGACGTTTTCCAAGCGTAGATCGGGACTTCTCAAGAAAGCCAACGAAATCTCTGTGCTATGTGATGCTCAAGTTGCTTTGATTATGTTCTCTACCAAAGGAAAACTTTTTGAGTATTCCTCTGAACGCAGCATGGAAGACGTCCTGGAACGTTACGAGAGATATACACATACAGCACTTACTGGAGCTAATAACAATGAATCACAGGGAAATTGGTCTTTCGAATATATCAAGCTCACCGCCAAAGTTGAAGTCTTGGACAGGAACGTAAGGAATTTCTTGGGAAATGATCTGGATCCCTTGAGTTTGAAAGAGCTTCAGAGTTTGGAGCAGCAGCTTGACACAGCTCTGAAGCGCATCCGAACAAGAAAGAATCAAGTTATGAATGAATCCATCTCAGACCTGCATAAAAGGATGAAGGAGAAAGCGAAAACAGTGACTGAAGGTCCACATACTGGCCCAGAAACTCTAGGCCCAAATTCATCGACCCTTAACTTAACTTCTCCACAGCTACCACCACCACCACAAAGACTGGTTCCTTCTCTAACTCTCTGTGAGACATTCCAAGGAAGAGCATTGGTGGAAGAAACGGGAAAGGCTCAAACAGTCCCTAGTGGCAATTCTCTCATCCCACCATGGATGCTTCATATCTGA
Predicted protein sequences of Glyma.08g250800
>Glyma.08g250800.1.p sequence-type=predicted peptide transcript=Glyma.08g250800.1 locus=Glyma.08g250800 ID=Glyma.08g250800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGRGRVQLKRIENKTSQQVTFSKRRSGLLKKANEISVLCDAQVALIMFSTKGKLFEYSSERSMEDVLERYERYTHTALTGANNNESQGNWSFEYIKLTAKVEVLDRNVRNFLGNDLDPLSLKELQSLEQQLDTALKRIRTRKNQVMNESISDLHKRARTLQEQNSKLAKMKEKAKTVTEGPHTGPETLGPNSSTLNLTSPQLPPPPQRLVPSLTLCETFQGRALVEETGKAQTVPSGNSLIPPWMLHI*

>Glyma.08g250800.2.p sequence-type=predicted peptide transcript=Glyma.08g250800.2 locus=Glyma.08g250800 ID=Glyma.08g250800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGRGRVQLKRIENKTSQQVTFSKRRSGLLKKANEISVLCDAQVALIMFSTKGKLFEYSSERSMEDVLERYERYTHTALTGANNNESQGNWSFEYIKLTAKVEVLDRNVRNFLGNDLDPLSLKELQSLEQQLDTALKRIRTRKNQVMNESISDLHKRMKEKAKTVTEGPHTGPETLGPNSSTLNLTSPQLPPPPQRLVPSLTLCETFQGRALVEETGKAQTVPSGNSLIPPWMLHI*






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