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Report for Sequence Feature Glyma.08g246200

Feature Type:gene_model
Chromosome:Gm08
Start:21288285
stop:21295790
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.08g246200
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G25940.1AT TFIIB zinc-binding protein JGI N/AIEA
GO:0006351GO-bp transcription, DNA-templated EnsemblGenomesN/AIEA
GO:0006351GO-bp transcription, DNA-templated JGI N/AIEA
GO:0006363GO-bp termination of RNA polymerase I transcription EnsemblGenomesN/AIEA
GO:0006379GO-bp mRNA cleavage EnsemblGenomesN/AIEA
GO:0005736GO-cc DNA-directed RNA polymerase I complex EnsemblGenomesN/AIEA
GO:0001054GO-mf RNA polymerase I activity EnsemblGenomesN/AIEA
GO:0003676GO-mf nucleic acid binding EnsemblGenomesN/AIEA
GO:0003676GO-mf nucleic acid binding JGI N/AIEA
GO:0008270GO-mf zinc ion binding EnsemblGenomesN/AIEA
GO:0008270GO-mf zinc ion binding JGI N/AIEA
GO:0046872GO-mf metal ion binding EnsemblGenomesN/AIEA
PTHR11239Panther DNA-DIRECTED RNA POLYMERASE JGI N/AIEA
PF01096PFAM Transcription factor S-II (TFIIS) JGI N/AIEA

Expression Patterns of Glyma.08g246200
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.08g246200 not represented in the dataset
Glyma.08g246200 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.08g246200 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma08g26995 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.08g246200
>Glyma.08g246200.1 sequence-type=CDS polypeptide=Glyma.08g246200.1.p locus=Glyma.08g246200 ID=Glyma.08g246200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGTAGTTACACAGGATACCAGAAGAGAGCTTGGAATGGAAATAATTGAGGAACATACGGTGATGGAATATTCTAAGGTTAGCAAGAAATGTGAAAAATGTGGCCATGGGGAAGCTACCTATTATACTAGACAGATGAGATCAGCAGACAAAGGGCAAACTACTTTTTACACATGTACCGGTTGTGGTCATCAGTCTCAGGAGAATTAG
Predicted protein sequences of Glyma.08g246200
>Glyma.08g246200.1.p sequence-type=predicted peptide transcript=Glyma.08g246200.1 locus=Glyma.08g246200 ID=Glyma.08g246200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MVVTQDTRRELGMEIIEEHTVMEYSKVSKKCEKCGHGEATYYTRQMRSADKGQTTFYTCTGCGHQSQEN*






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