Glyma.08g241800

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.08g241800

Feature Type:	gene_model
Chromosome:	Gm08
Start:	20673271
stop:	20676811
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.08g241800

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G39380.1	AT	Plant calmodulin-binding protein-related	JGI	N/A	IEA
GO:0005516	GO-mf	calmodulin binding	EnsemblGenomes	N/A	IEA
GO:0005516	GO-mf	calmodulin binding	JGI	N/A	IEA
PF07839	PFAM	Plant calmodulin-binding domain	JGI	N/A	IEA

Expression Patterns of Glyma.08g241800

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.08g241800

Paralog	Evidence	Comments
Glyma.18g264100	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.08g241800 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma08g26390	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.08g241800

Limit To All Plant Sequences

>Glyma.08g241800.2 sequence-type=transcript locus=Glyma.08g241800 ID=Glyma.08g241800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
gCTGAAAAATGTTTCCTTGGCCGTTACGGTTGCTATGGGTTCTGTAGTTTGGAGAATCGGCAAAAGGATTTTGCCCCCGATCTTCTTCTGCATAGCTCATATCCCATCCGATGGCTAAGGAAAGTGTTGATTTACCACTGATTCCAAAAGTAACTATGTCAAGTGGGGTTGCATTAAGAAGGCACTCAGCGGGAATAGCAAATTCTGGAAATAATGAAAAAAAACTTGTCCCTCATTATCTCAGAGCATCTACTGGCTCCTGTCATGATTTTTGTAAATATGGGAGGAAGAATGTGGAAGAAGCAAGGGAGAAACTCTCCATTATTAAGAGAGCTGGAAGAAAATCACTTTCCCGAAGTTCAGAAGACATTATTGATGGGATAATGACATCAGTTGCCAAGCAAAAAACATCTCTTGATTCCACGTCAACAAAGATGTCAACAGTGAAACATAGTGAATCAGTTGGCACAAATAAGATGGAACTCCCAACAAAATCATCTGGCAGCCAAAAACAAATGGGGAATAAAGTTCTAGTGAACACAAGCAAGGCATCATTGGTCAGTGTCAAACCATCATTCCTTCCAAAATCACATATTTCTTCAATCCCCGAAGCAAGGAGAGGGGGGATTTCTTTAAGTTTTGAGGTGGAAGCTCTATCAAAACCAACTTCCAAAAGGGTGGAAGCTTCACCAACAGAAACTTCTGAGAGGGTGAAAACTCATCCTAAATCAACTTCCCAAATTGTCAAAACTTCACCAAAATCCATGTTCAAGAAGAAGCAAACTTTAAAGGTGTCTCCTTTTGAAGAAAAAGAAATGGAGTTGTCTGATAAACATGTGACTTCTTTGAATCCAGATTTCATCACAAAGCAGACCATATCTTCTGTGAATTCTTCTGATGTCTTTGGCGGCCAAAGGAATAGTAAGATTAAGATGAACAAGAAAGAAGTCTCCTCCAAATCTTCTTCCAGAGGAATTGGAAGTGTTAGTGCAAGAAAGCACAAGGGCCTGAAAATTGTGCCTCATCTTATGAATCAACCCAAGCCTATAAAAGTTGAACTTGAGGAACACAACAATGAGGCTCAGGAAAAGACTTTGTACATCATCAAGATGGAAAGTACAAAGCAAAGTTCGCACTCTGATCAAAATGAAAGCCAGGATATTGAAGACCAAGAGGAATCTGAATACTCAAATAGTGAATTTGAGGAGGATGCTTGTCCAGAAAACCATGAAATTGAATACATGGCTAATGTGGACACTTTGGAAGTTGAGAAGAATGGAAAGCCTCAAAATGATGAGATTGTTTGTTCTGAAGAGAAGGAGTGCCAACAGTTAGGGGGGAAATTGGTTGAAACTCAAATTGAATATATGGCTAATGTAGACACTTTTGAAGCTGAGAAGAATGGAAAGCCTCAAAAGGATGGAATTGTTTGTTCTGAAGACAAGGAGTGCCATAAATTAAGGGGAGAATTGGTTGAAACTCAAATTGAATACATGGCTAATGTGGACACTTTGGAAGCTGAGGAGAATGGAAAGCCTCAAAAGCATGGGATTAATTGTTCTGAAGCCAAGGAGTGCCAAAAATTAGGGGGAGAATTGCTTGAAACTCATATTGAAAAGGGTAGTCTGAGGAGCCTTGAAGTCCAGAAAGAAGTGTTGGGGGCCATCACTACTGATGTCAAGGCCGTTGCTATAACTGCTCCAGAGAAGGTTCTTTTGAGACATCAACATGTGCAGGTCAAGAAAGATGGACAAGGATTGTACAATAATGTGATTAAGGAAACAACTAAACATGTTGAAACTCAGAAGGGCAAGGTTAAAGCACTGATTGATGCCTTTGAAGCTGTAATCTCTCTTGAAGAGAAAAGTATTTCTGCTGCAAACATTGTCAATTGATCTTGGCAGACTTTTTTTAGATTTCTCTTACATTGTAAAGAAATGGTAGGAAAACAAATCCAAGGTTGTGGCAGTTAGTGTGCCCCAACAAGCTATTGTTCAGCTGAAAATATAGATAGATTTGTCTTGTGTCTTGTCTGTAGAAGAACTGGGAGTGTAGAGTTGAACTGGGGAACTTATGTTCACCACCACTCTTGTGTGAGAACTTATACTCATCATTCTGTTCTTGAAACTTATACCTGTTGTGATTGATTTTTATCTTTTGAATAAAACAATGATAGCATGGTTTTAGCATTC

Coding sequences of Glyma.08g241800

Limit To All Plant Sequences

>Glyma.08g241800.1 sequence-type=CDS polypeptide=Glyma.08g241800.1.p locus=Glyma.08g241800 ID=Glyma.08g241800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTAAGGAAAGTGTTGATTTACCACTGATTCCAAAAGTAACTATGTCAAGTGGGGTTGCATTAAGAAGGCACTCAGCGGGAATAGCAAATTCTGGAAATAATGAAAAAAAACTTGTCCCTCATTATCTCAGAGCATCTACTGGCTCCTGTCATGATTTTTGTAAATATGGGAGGAAGAATGTGGAAGAAGCAAGGGAGAAACTCTCCATTATTAAGAGAGCTGGAAGAAAATCACTTTCCCGAAGTTCAGAAGACATTATTGATGGGATAATGACATCAGTTGCCAAGCAAAAAACATCTCTTGATTCCACGTCAACAAAGATGTCAACAGTGAAACATAGTGAATCAGTTGGCACAAATAAGATGGAACTCCCAACAAAATCATCTGGCAGCCAAAAACAAATGGGGAATAAAGTTCTAGTGAACACAAGCAAGGCATCATTGGTCAGTGTCAAACCATCATTCCTTCCAAAATCACATATTTCTTCAATCCCCGAAGCAAGGAGAGGGGGGATTTCTTTAAGTTTTGAGGTGGAAGCTCTATCAAAACCAACTTCCAAAAGGGTGGAAGCTTCACCAACAGAAACTTCTGAGAGGGTGAAAACTCATCCTAAATCAACTTCCCAAATTGTCAAAACTTCACCAAAATCCATGTTCAAGAAGAAGCAAACTTTAAAGGTGTCTCCTTTTGAAGAAAAAGAAATGGAGTTGTCTGATAAACATGTGACTTCTTTGAATCCAGATTTCATCACAAAGCAGACCATATCTTCTGTGAATTCTTCTGATGTCTTTGGCGGCCAAAGGAATAGTAAGATTAAGATGAACAAGAAAGAAGTCTCCTCCAAATCTTCTTCCAGAGGAATTGGAAGTGTTAGTGCAAGAAAGCACAAGGGCCTGAAAATTGTGCCTCATCTTATGAATCAACCCAAGCCTATAAAAGTTGAACTTGAGGAACACAACAATGAGGCTCAGGAAAAGACTTTGTACATCATCAAGATGGAAAGTACAAAGCAAAGTTCGCACTCTGATCAAAATGAAAGCCAGGATATTGAAGACCAAGAGGAATCTGAATACTCAAATAGTGAATTTGAGGAGGATGCTTGTCCAGAAAACCATGAAATTGAATACATGGCTAATGTGGACACTTTGGAAGTTGAGAAGAATGGAAAGCCTCAAAATGATGAGATTGTTTGTTCTGAAGAGAAGGAGTGCCAACAGTTAGGGGGGAAATTGGTTGAAACTCAAATTGAATATATGGCTAATGTAGACACTTTTGAAGCTGAGAAGAATGGAAAGCCTCAAAAGGATGGAATTGTTTGTTCTGAAGACAAGGAGTGCCATAAATTAAGGGGAGAATTGGTTGAAACTCAAATTGAATACATGGCTAATGTGGACACTTTGGAAGCTGAGGAGAATGGAAAGCCTCAAAAGCATGGGATTAATTGTTCTGAAGCCAAGGAGTGCCAAAAATTAGGGGGAGAATTGCTTGAAACTCATATTGAAAAGGGTAGTCTGAGGAGCCTTGAAGTCCAGAAAGAAGTGTTGGGGGCCATCACTACTGATGTCAAGGCCGTTGCTATAACTGCTCCAGAGAAGGTTCTTTTGAGACATCAACATGTGCAGGTCAAGAAAGATGGACAAGGATTGTACAATAATGTGATTAAGGAAACAACTAAACATGTTGAAACTCAGAAGGGCAAGGTTAAAGCACTGATTGATGCCTTTGAAGCTGTAATCTCTCTTGAAGAGAAAAGTATTTCTGCTGCAAACATTGTCAATTGA

>Glyma.08g241800.2 sequence-type=CDS polypeptide=Glyma.08g241800.2.p locus=Glyma.08g241800 ID=Glyma.08g241800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTAAGGAAAGTGTTGATTTACCACTGATTCCAAAAGTAACTATGTCAAGTGGGGTTGCATTAAGAAGGCACTCAGCGGGAATAGCAAATTCTGGAAATAATGAAAAAAAACTTGTCCCTCATTATCTCAGAGCATCTACTGGCTCCTGTCATGATTTTTGTAAATATGGGAGGAAGAATGTGGAAGAAGCAAGGGAGAAACTCTCCATTATTAAGAGAGCTGGAAGAAAATCACTTTCCCGAAGTTCAGAAGACATTATTGATGGGATAATGACATCAGTTGCCAAGCAAAAAACATCTCTTGATTCCACGTCAACAAAGATGTCAACAGTGAAACATAGTGAATCAGTTGGCACAAATAAGATGGAACTCCCAACAAAATCATCTGGCAGCCAAAAACAAATGGGGAATAAAGTTCTAGTGAACACAAGCAAGGCATCATTGGTCAGTGTCAAACCATCATTCCTTCCAAAATCACATATTTCTTCAATCCCCGAAGCAAGGAGAGGGGGGATTTCTTTAAGTTTTGAGGTGGAAGCTCTATCAAAACCAACTTCCAAAAGGGTGGAAGCTTCACCAACAGAAACTTCTGAGAGGGTGAAAACTCATCCTAAATCAACTTCCCAAATTGTCAAAACTTCACCAAAATCCATGTTCAAGAAGAAGCAAACTTTAAAGGTGTCTCCTTTTGAAGAAAAAGAAATGGAGTTGTCTGATAAACATGTGACTTCTTTGAATCCAGATTTCATCACAAAGCAGACCATATCTTCTGTGAATTCTTCTGATGTCTTTGGCGGCCAAAGGAATAGTAAGATTAAGATGAACAAGAAAGAAGTCTCCTCCAAATCTTCTTCCAGAGGAATTGGAAGTGTTAGTGCAAGAAAGCACAAGGGCCTGAAAATTGTGCCTCATCTTATGAATCAACCCAAGCCTATAAAAGTTGAACTTGAGGAACACAACAATGAGGCTCAGGAAAAGACTTTGTACATCATCAAGATGGAAAGTACAAAGCAAAGTTCGCACTCTGATCAAAATGAAAGCCAGGATATTGAAGACCAAGAGGAATCTGAATACTCAAATAGTGAATTTGAGGAGGATGCTTGTCCAGAAAACCATGAAATTGAATACATGGCTAATGTGGACACTTTGGAAGTTGAGAAGAATGGAAAGCCTCAAAATGATGAGATTGTTTGTTCTGAAGAGAAGGAGTGCCAACAGTTAGGGGGGAAATTGGTTGAAACTCAAATTGAATATATGGCTAATGTAGACACTTTTGAAGCTGAGAAGAATGGAAAGCCTCAAAAGGATGGAATTGTTTGTTCTGAAGACAAGGAGTGCCATAAATTAAGGGGAGAATTGGTTGAAACTCAAATTGAATACATGGCTAATGTGGACACTTTGGAAGCTGAGGAGAATGGAAAGCCTCAAAAGCATGGGATTAATTGTTCTGAAGCCAAGGAGTGCCAAAAATTAGGGGGAGAATTGCTTGAAACTCATATTGAAAAGGGTAGTCTGAGGAGCCTTGAAGTCCAGAAAGAAGTGTTGGGGGCCATCACTACTGATGTCAAGGCCGTTGCTATAACTGCTCCAGAGAAGGTTCTTTTGAGACATCAACATGTGCAGGTCAAGAAAGATGGACAAGGATTGTACAATAATGTGATTAAGGAAACAACTAAACATGTTGAAACTCAGAAGGGCAAGGTTAAAGCACTGATTGATGCCTTTGAAGCTGTAATCTCTCTTGAAGAGAAAAGTATTTCTGCTGCAAACATTGTCAATTGA

Predicted protein sequences of Glyma.08g241800

Limit To All Plant Sequences

>Glyma.08g241800.1.p sequence-type=predicted peptide transcript=Glyma.08g241800.1 locus=Glyma.08g241800 ID=Glyma.08g241800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAKESVDLPLIPKVTMSSGVALRRHSAGIANSGNNEKKLVPHYLRASTGSCHDFCKYGRKNVEEAREKLSIIKRAGRKSLSRSSEDIIDGIMTSVAKQKTSLDSTSTKMSTVKHSESVGTNKMELPTKSSGSQKQMGNKVLVNTSKASLVSVKPSFLPKSHISSIPEARRGGISLSFEVEALSKPTSKRVEASPTETSERVKTHPKSTSQIVKTSPKSMFKKKQTLKVSPFEEKEMELSDKHVTSLNPDFITKQTISSVNSSDVFGGQRNSKIKMNKKEVSSKSSSRGIGSVSARKHKGLKIVPHLMNQPKPIKVELEEHNNEAQEKTLYIIKMESTKQSSHSDQNESQDIEDQEESEYSNSEFEEDACPENHEIEYMANVDTLEVEKNGKPQNDEIVCSEEKECQQLGGKLVETQIEYMANVDTFEAEKNGKPQKDGIVCSEDKECHKLRGELVETQIEYMANVDTLEAEENGKPQKHGINCSEAKECQKLGGELLETHIEKGSLRSLEVQKEVLGAITTDVKAVAITAPEKVLLRHQHVQVKKDGQGLYNNVIKETTKHVETQKGKVKALIDAFEAVISLEEKSISAANIVN*

>Glyma.08g241800.2.p sequence-type=predicted peptide transcript=Glyma.08g241800.2 locus=Glyma.08g241800 ID=Glyma.08g241800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAKESVDLPLIPKVTMSSGVALRRHSAGIANSGNNEKKLVPHYLRASTGSCHDFCKYGRKNVEEAREKLSIIKRAGRKSLSRSSEDIIDGIMTSVAKQKTSLDSTSTKMSTVKHSESVGTNKMELPTKSSGSQKQMGNKVLVNTSKASLVSVKPSFLPKSHISSIPEARRGGISLSFEVEALSKPTSKRVEASPTETSERVKTHPKSTSQIVKTSPKSMFKKKQTLKVSPFEEKEMELSDKHVTSLNPDFITKQTISSVNSSDVFGGQRNSKIKMNKKEVSSKSSSRGIGSVSARKHKGLKIVPHLMNQPKPIKVELEEHNNEAQEKTLYIIKMESTKQSSHSDQNESQDIEDQEESEYSNSEFEEDACPENHEIEYMANVDTLEVEKNGKPQNDEIVCSEEKECQQLGGKLVETQIEYMANVDTFEAEKNGKPQKDGIVCSEDKECHKLRGELVETQIEYMANVDTLEAEENGKPQKHGINCSEAKECQKLGGELLETHIEKGSLRSLEVQKEVLGAITTDVKAVAITAPEKVLLRHQHVQVKKDGQGLYNNVIKETTKHVETQKGKVKALIDAFEAVISLEEKSISAANIVN*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain