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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G72090.1 | AT | Methylthiotransferase | JGI | N/A | IEA |
| GO:0035600 | GO-bp | tRNA methylthiolation | EnsemblGenomes | N/A | IEA |
| GO:0005783 | GO-cc | endoplasmic reticulum | EnsemblGenomes | N/A | IEA |
| GO:0016020 | GO-cc | membrane | EnsemblGenomes | N/A | IEA |
| GO:0016021 | GO-cc | integral component of membrane | EnsemblGenomes | N/A | IEA |
| GO:0003824 | GO-mf | catalytic activity | EnsemblGenomes | N/A | IEA |
| GO:0003824 | GO-mf | catalytic activity | JGI | N/A | IEA |
| GO:0035598 | GO-mf | N6-threonylcarbomyladenosine methylthiotransferase activity | EnsemblGenomes | N/A | IEA |
| GO:0051536 | GO-mf | iron-sulfur cluster binding | EnsemblGenomes | N/A | IEA |
| GO:0051536 | GO-mf | iron-sulfur cluster binding | JGI | N/A | IEA |
| GO:0051539 | GO-mf | 4 iron, 4 sulfur cluster binding | EnsemblGenomes | N/A | IEA |
| KOG4355 | KOG | Predicted Fe-S oxidoreductase | JGI | N/A | IEA |
| PTHR11918 | Panther | RADICAL SAM PROTEINS | JGI | N/A | IEA |
| PTHR11918:SF41 | Panther | JGI | N/A | IEA | |
| PF04055 | PFAM | Radical SAM superfamily | JGI | N/A | IEA |
| GN7V-65835 | SoyCyc9-rxn | Enzyme name not determined | Plant Metabolic Network | ISS |
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Glyma.08g239200 not represented in the dataset |
Glyma.08g239200 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.12g001400 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
>Glyma.08g239200.1 sequence-type=CDS polypeptide=Glyma.08g239200.1.p locus=Glyma.08g239200 ID=Glyma.08g239200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGATACCATCATAACCAAAGGAAAATCTTCGAATAAACCACTAGTTGTTGCTGGCTGTGTCCCTCAAGGAAGTCGAGATTTGAAAGAGCTCCAAGGGATCAGCATAGTTGGAGTCCAGCAAATCCATCGTGTTGTTGAAATTGTAGAGGAGACTCTAAAAGGTCATGAAGTGCGCCTTTTGACCCGTAAGAAATTGCCCACACTTGACCTTCCAAAGGTAAGGAAGAACAAGTTTGTTGAGATTCTTCCTATTAATGTTGGTTGTTTAGGTGCTTGCACTTATTGCAAGACAAAGCATGCTCGGGGTCACCTAGGAAGTTACACAATTGATAGCCTTGTTAGGCGTGTAAAATCTGTCATATCTGAAGGGATTGCAGAGATTTTGCGGCATCCATGTGTTTACTCTTTTCTGCATGTACCAGTTCAATCTGGAAGTGATACTATTTTGAGTGCAATGAATCGAGAATATACTGTGAGTGAGTTCAGGACTGTTGTAGATACTCTAACTGAGCTTGTGCCAGAGATGCAGATTGCCACTGATATAATATGCAGATTTCCTGGTGAAACTGATGAAGATTTTGTGCAAACTGTCAACCTTATTGAAGAGTACAAGTTCCCTCAAGTTCACATTTCACAATTTTATCCTCGACCAGGGACACCTGCTGCAAGGATGAAAAAGGTTCCAAGTAATGTGGTTAAGAGAAGAAGCCGTGAACTGACATGCAAAGTAGAAAGAATTTGGATTACTGATATTGCATCTGATGGAGTTCACTTGGTTGGTCATACAAAAGGATATATACAAGTTCTTGTACTTGCTCCAGACAATATGCTGGGAACTTCAGCTGTGGTTAAGATAACATCTGTGGGAAGGTGGTCAGTTTTTGGGGAAATATTTGAGACAATCAACCATGCAAGTGACAATAAAGCTCTAAACAAATTGGTTCCTAATCAGGATTTGTCTTCTCTCTGCGGTGGATTTTCAGAAGAGCAAGAATCTTGTGCCTGTGGAAATGACATCTGTTGTGGTCAGGAGGGTACTCTCGAAAAGAGTGACAATTCAAGAGGCAGTCAGAACCAAAGCAAAAGAAATTTCATTGGATGGATGCTGAGGAAGCGGGGGCATCTGCACAAAACGGTTGAGAGTGAGCTTGCCTCAGGATCTGTTAAAAAGCAAGAAGGAAGCATGAGGAAGTGGGACTTGGTTGATAAGGTTCTTTTGGGTGGAATATCTATCAGCATCTTGACGATTATGGCTCTAGTAGTAGCTGTTATGTTTCGAGTTATTTGGTCCCAATAA
>Glyma.08g239200.1.p sequence-type=predicted peptide transcript=Glyma.08g239200.1 locus=Glyma.08g239200 ID=Glyma.08g239200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MDTIITKGKSSNKPLVVAGCVPQGSRDLKELQGISIVGVQQIHRVVEIVEETLKGHEVRLLTRKKLPTLDLPKVRKNKFVEILPINVGCLGACTYCKTKHARGHLGSYTIDSLVRRVKSVISEGIAEILRHPCVYSFLHVPVQSGSDTILSAMNREYTVSEFRTVVDTLTELVPEMQIATDIICRFPGETDEDFVQTVNLIEEYKFPQVHISQFYPRPGTPAARMKKVPSNVVKRRSRELTCKVERIWITDIASDGVHLVGHTKGYIQVLVLAPDNMLGTSAVVKITSVGRWSVFGEIFETINHASDNKALNKLVPNQDLSSLCGGFSEEQESCACGNDICCGQEGTLEKSDNSRGSQNQSKRNFIGWMLRKRGHLHKTVESELASGSVKKQEGSMRKWDLVDKVLLGGISISILTIMALVVAVMFRVIWSQ*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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