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Report for Sequence Feature Glyma.08g237800

Feature Type:gene_model
Chromosome:Gm08
Start:20272407
stop:20273172
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.08g237800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G17200.1AT Pectin lyase-like superfamily protein JGI N/AIEA
GO:0005975GO-bp carbohydrate metabolic process EnsemblGenomesN/AIEA
GO:0005975GO-bp carbohydrate metabolic process JGI N/AIEA
GO:0008152GO-bp metabolic process EnsemblGenomesN/AIEA
GO:0004650GO-mf polygalacturonase activity EnsemblGenomesN/AIEA
GO:0004650GO-mf polygalacturonase activity JGI N/AIEA
GO:0016787GO-mf hydrolase activity EnsemblGenomesN/AIEA
GO:0016798GO-mf hydrolase activity, acting on glycosyl bonds EnsemblGenomesN/AIEA
PF00295PFAM Glycosyl hydrolases family 28 JGI N/AIEA
PWY-1081SoyCyc9 homogalacturonan degradation Plant Metabolic Network ISS
GN7V-47870SoyCyc9-rxn polygalacturonase Plant Metabolic Network ISS

Expression Patterns of Glyma.08g237800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.08g237800 not represented in the dataset
Glyma.08g237800 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.08g237800 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma08g25901 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.08g237800
>Glyma.08g237800.1 sequence-type=CDS polypeptide=Glyma.08g237800.1.p locus=Glyma.08g237800 ID=Glyma.08g237800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTTGAAACCTCTTCAATTCAGTTGTCCCTGCAGTTTCTCTTTGGTTCATTTTCAAGTTGAAGGAGATGTTGTTACACCAAAGAGCACCGAAGCATGGAAGGGTCAGGACTCTAGCAAGTGGATTGATTTTTCAAATGTCAATGGCCTTATAATCGATGAAGGTGGACAAATTGACGGCAGTGGTTCTATCTGGTGGAATTCTTGTAAAGTGAAATGCTGCTTAAGACCAACGGCCCTTTCTATTCACAATTGCAACAACCTACAACTAACTGGGATTCGTCATCTCAATAGTGCAAGAAACCATATATCTATAAATAATTCTAATCACAATCACATATTCAATGTCAATATCGATGCACCTCTAGATAGCCCAAACATTAATGGAATTGACGTTTCTCAATCAAGCTACACTCTAATTCAGCACTCAACCATTGCAATAGGTAAGAGGCATTAA
Predicted protein sequences of Glyma.08g237800
>Glyma.08g237800.1.p sequence-type=predicted peptide transcript=Glyma.08g237800.1 locus=Glyma.08g237800 ID=Glyma.08g237800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLKPLQFSCPCSFSLVHFQVEGDVVTPKSTEAWKGQDSSKWIDFSNVNGLIIDEGGQIDGSGSIWWNSCKVKCCLRPTALSIHNCNNLQLTGIRHLNSARNHISINNSNHNHIFNVNIDAPLDSPNINGIDVSQSSYTLIQHSTIAIGKRH*






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