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Report for Sequence Feature Glyma.08g236400

Feature Type:gene_model
Chromosome:Gm08
Start:20009675
stop:20029987
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.08g236400
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G56050.1AT GTP-binding protein-related JGI N/AIEA
GO:0015684GO-bp ferrous iron transport JGI N/AIEA
GO:0005737GO-cc cytoplasm EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane JGI N/AIEA
GO:0000166GO-mf nucleotide binding EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding EnsemblGenomesN/AIEA
GO:0005525GO-mf GTP binding EnsemblGenomesN/AIEA
GO:0005525GO-mf GTP binding JGI N/AIEA
GO:0015093GO-mf ferrous iron transmembrane transporter activity JGI N/AIEA
GO:0016787GO-mf hydrolase activity EnsemblGenomesN/AIEA
GO:0016887GO-mf ATPase activity EnsemblGenomesN/AIEA
GO:0043022GO-mf ribosome binding EnsemblGenomesN/AIEA
GO:0043023GO-mf ribosomal large subunit binding EnsemblGenomesN/AIEA
KOG1491 KOG Predicted GTP-binding protein (ODN superfamily) JGI N/AIEA
PTHR23305Panther GTP-BINDING PROTEIN-RELATED JGI N/AIEA
PTHR23305:SF5Panther JGI N/AIEA
PF01926PFAM 50S ribosome-binding GTPase JGI N/AIEA
PF06071PFAM Protein of unknown function (DUF933) JGI N/AIEA

Expression Patterns of Glyma.08g236400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.08g236400 not represented in the dataset
Glyma.08g236400 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.08g236400 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma08g25673 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.08g236400
>Glyma.08g236400.2 sequence-type=transcript locus=Glyma.08g236400 ID=Glyma.08g236400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GCACCCACCATACACACCCATTGGAAACCGTTCAAAAGAGATACCTTACAATCGTTTTACAATGCAGCATAAGAACAACTAACAGTAGCACGCTACTCTCTTTTTCTCTCGTGTGTGTAATCCTGCAAGTAAATGGCAAGAGCAGCTTGCAATCACCTTCACTTGGTTCCCAGTTTAGTTCATCCTCTAAAGTCAACCCTCTTCACAAATCACACTCTTTCCACCACACGCACTCGCTTCTATGGCATTCACCGAAGGTTCTCTTCTTCTTCATCCAAAATAAGCATGAGCCTCAAGGCTGGTATTGTTGGCCTTCCCAACGTTGGCAAGTCCACTCTCTTCAATGCCGTTGTGGAAAATGGAAAGGCTCAAGCTGCTAATTTTCCATTTTGTACAATAGAGCCAAATGTAGGGATTGTTGCTGTTCCAGATTCTCGTCTTCACGTGCTTTCTGATCTCAGCAAATCTCAACGAGCAGTTCCAGCATCAATAGAGTTTGTAGATATTGCTGGGCTTGTCAAGGGTGCAAGTCAAGGAGAGGGTTTGGGCAATAAGTTTTTGTCTCATATTCGTGAGGTGGACTCTATACTTCAGGTTGTACGATGTTTTGAAGACAACGACATTGTTCATGTGAATGGGAAAGTTGATCCCAAGTCTGATATTGATGTTATCAATTTGGAGCTTGTTTTCTCAGATTTGGACCAGATTGAAAAAAGAATTGATAAGCTAAAGAAAGGCAAGGCAAAGGATTCACAAAAACTCAAGGAAGAGGCAGAAAAGTCTGCACTGGAAAAGATTCGTGAGGCGCTTATGGATGGAAAACCTGCGCGATCTGTTACCTTAACTGATTTTGAAAGGGATGCTGTAAAGCATCTCTGCTTGCTCACCATGAAACCTGTTATATATGTGGCAAATGTTGCAGAATCTGATCTAGCTGATCCTGCAAACAATAATTATGTCAAGGACGTAACAAATGTTGTGTCTGAGTTGCAGTCCAGAATTGTAACAATTTCAGCACAGGTTGAGGCAGAGCTTACTGAACTACCAGTTGAAGAACGACAAGAATATTTGCAATCTCTTGGTGTTAGTGAAAGTGGTCTTGGCAACCTAATAAGGGCAACATATGACCTTCTGGGTCTCAGAACTTACTTTACTTCTGGTGAGAAGGAGACAAAGGCATGGACAATACTTGCAGGAATGACTGCACCTCAAGCAGCTGGAGTTATTCACTCTGACTTTGAGAAGGGTTTCATTCGAGCAGAGACAGTGTCTTATGAGGATTTTGTTGCTGCTGGTTCACTTTCTGCAGCACGAGAGAAAGGACTGtaaggatggcatcaccccaatgatgaactggagcatttgcaccaaacaata
Coding sequences of Glyma.08g236400
>Glyma.08g236400.1 sequence-type=CDS polypeptide=Glyma.08g236400.1.p locus=Glyma.08g236400 ID=Glyma.08g236400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCAAGAGCAGCTTGCAATCACCTTCACTTGGTTCCCAGTTTAGTTCATCCTCTAAAGTCAACCCTCTTCACAAATCACACTCTTTCCACCACACGCACTCGCTTCTATGGCATTCACCGAAGGTTCTCTTCTTCTTCATCCAAAATAAGCATGAGCCTCAAGGCTGGTATTGTTGGCCTTCCCAACGTTGGCAAGTCCACTCTCTTCAATGCCGTTGTGGAAAATGGAAAGGCTCAAGCTGCTAATTTTCCATTTTGTACAATAGAGCCAAATGTAGGGATTGTTGCTGTTCCAGATTCTCGTCTTCACGTGCTTTCTGATCTCAGCAAATCTCAACGAGCAGTTCCAGCATCAATAGAGTTTGTAGATATTGCTGGGCTTGTCAAGGGTGCAAGTCAAGGAGAGGGTTTGGGCAATAAGTTTTTGTCTCATATTCGTGAGGTGGACTCTATACTTCAGGTTGTACGATGTTTTGAAGACAACGACATTGTTCATGTGAATGGGAAAGTTGATCCCAAGTCTGATATTGATGTTATCAATTTGGAGCTTGTTTTCTCAGATTTGGACCAGATTGAAAAAAGAATTGATAAGCTAAAGAAAGGCAAGGCAAAGGATTCACAAAAACTCAAGGAAGAGGCAGAAAAGTCTGCACTGGAAAAGATTCGTGAGGCGCTTATGGATGGAAAACCTGCGCGATCTGTTACCTTAACTGATTTTGAAAGGGATGCTGTAAAGCATCTCTGCTTGCTCACCATGAAACCTGTTATATATGTGGCAAATGTTGCAGAATCTGATCTAGCTGATCCTGCAAACAATAATTATGTCAAGGACGTAACAAATGTTGTGTCTGAGTTGCAGTCCAGAATTGTAACAATTTCAGCACAGGTTGAGGCAGAGCTTACTGAACTACCAGTTGAAGAACGACAAGAATATTTGCAATCTCTTGGTGTTAGTGAAAGTGGTCTTGGCAACCTAATAAGGGCAACATATGACCTTCTGGGTCTCAGAACTTACTTTACTTCTGGTGAGAAGGAGACAAAGGCATGGACAATACTTGCAGGAATGACTGCACCTCAAGCAGCTGGAGTTATTCACTCTGACTTTGAGAAGGGTTTCATTCGAGCAGAGACAGTGTCTTATGAGGATTTTGTTGCTGCTGGTTCACTTTCTGCAGCACGAGAGAAAGGACTGTTGAGATCTGAAGGTAAAGACTACGTTGTACAAGAAGCAGATGTCATGTTGTTTCGATTCAATGTTTAG

>Glyma.08g236400.2 sequence-type=CDS polypeptide=Glyma.08g236400.2.p locus=Glyma.08g236400 ID=Glyma.08g236400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCAAGAGCAGCTTGCAATCACCTTCACTTGGTTCCCAGTTTAGTTCATCCTCTAAAGTCAACCCTCTTCACAAATCACACTCTTTCCACCACACGCACTCGCTTCTATGGCATTCACCGAAGGTTCTCTTCTTCTTCATCCAAAATAAGCATGAGCCTCAAGGCTGGTATTGTTGGCCTTCCCAACGTTGGCAAGTCCACTCTCTTCAATGCCGTTGTGGAAAATGGAAAGGCTCAAGCTGCTAATTTTCCATTTTGTACAATAGAGCCAAATGTAGGGATTGTTGCTGTTCCAGATTCTCGTCTTCACGTGCTTTCTGATCTCAGCAAATCTCAACGAGCAGTTCCAGCATCAATAGAGTTTGTAGATATTGCTGGGCTTGTCAAGGGTGCAAGTCAAGGAGAGGGTTTGGGCAATAAGTTTTTGTCTCATATTCGTGAGGTGGACTCTATACTTCAGGTTGTACGATGTTTTGAAGACAACGACATTGTTCATGTGAATGGGAAAGTTGATCCCAAGTCTGATATTGATGTTATCAATTTGGAGCTTGTTTTCTCAGATTTGGACCAGATTGAAAAAAGAATTGATAAGCTAAAGAAAGGCAAGGCAAAGGATTCACAAAAACTCAAGGAAGAGGCAGAAAAGTCTGCACTGGAAAAGATTCGTGAGGCGCTTATGGATGGAAAACCTGCGCGATCTGTTACCTTAACTGATTTTGAAAGGGATGCTGTAAAGCATCTCTGCTTGCTCACCATGAAACCTGTTATATATGTGGCAAATGTTGCAGAATCTGATCTAGCTGATCCTGCAAACAATAATTATGTCAAGGACGTAACAAATGTTGTGTCTGAGTTGCAGTCCAGAATTGTAACAATTTCAGCACAGGTTGAGGCAGAGCTTACTGAACTACCAGTTGAAGAACGACAAGAATATTTGCAATCTCTTGGTGTTAGTGAAAGTGGTCTTGGCAACCTAATAAGGGCAACATATGACCTTCTGGGTCTCAGAACTTACTTTACTTCTGGTGAGAAGGAGACAAAGGCATGGACAATACTTGCAGGAATGACTGCACCTCAAGCAGCTGGAGTTATTCACTCTGACTTTGAGAAGGGTTTCATTCGAGCAGAGACAGTGTCTTATGAGGATTTTGTTGCTGCTGGTTCACTTTCTGCAGCACGAGAGAAAGGACTGTAA
Predicted protein sequences of Glyma.08g236400
>Glyma.08g236400.1.p sequence-type=predicted peptide transcript=Glyma.08g236400.1 locus=Glyma.08g236400 ID=Glyma.08g236400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MARAACNHLHLVPSLVHPLKSTLFTNHTLSTTRTRFYGIHRRFSSSSSKISMSLKAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDSRLHVLSDLSKSQRAVPASIEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDIDVINLELVFSDLDQIEKRIDKLKKGKAKDSQKLKEEAEKSALEKIREALMDGKPARSVTLTDFERDAVKHLCLLTMKPVIYVANVAESDLADPANNNYVKDVTNVVSELQSRIVTISAQVEAELTELPVEERQEYLQSLGVSESGLGNLIRATYDLLGLRTYFTSGEKETKAWTILAGMTAPQAAGVIHSDFEKGFIRAETVSYEDFVAAGSLSAAREKGLLRSEGKDYVVQEADVMLFRFNV*

>Glyma.08g236400.2.p sequence-type=predicted peptide transcript=Glyma.08g236400.2 locus=Glyma.08g236400 ID=Glyma.08g236400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MARAACNHLHLVPSLVHPLKSTLFTNHTLSTTRTRFYGIHRRFSSSSSKISMSLKAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDSRLHVLSDLSKSQRAVPASIEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDIDVINLELVFSDLDQIEKRIDKLKKGKAKDSQKLKEEAEKSALEKIREALMDGKPARSVTLTDFERDAVKHLCLLTMKPVIYVANVAESDLADPANNNYVKDVTNVVSELQSRIVTISAQVEAELTELPVEERQEYLQSLGVSESGLGNLIRATYDLLGLRTYFTSGEKETKAWTILAGMTAPQAAGVIHSDFEKGFIRAETVSYEDFVAAGSLSAAREKGL*






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