Glyma.08g228000

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Report for Sequence Feature Glyma.08g228000

Feature Type:	gene_model
Chromosome:	Gm08
Start:	18584819
stop:	18594278
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.08g228000

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G04920.1	AT	EAP30/Vps36 family protein	JGI	N/A	IEA
GO:0032509	GO-bp	endosome transport via multivesicular body sorting pathway	EnsemblGenomes	N/A	IEA
GO:0043328	GO-bp	protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway	EnsemblGenomes	N/A	IEA
GO:0000814	GO-cc	ESCRT II complex	EnsemblGenomes	N/A	IEA
GO:0031902	GO-cc	late endosome membrane	EnsemblGenomes	N/A	IEA
GO:0032266	GO-mf	phosphatidylinositol-3-phosphate binding	EnsemblGenomes	N/A	IEA
GO:0032266	GO-mf	phosphatidylinositol-3-phosphate binding	JGI	N/A	IEA
GO:0043130	GO-mf	ubiquitin binding	EnsemblGenomes	N/A	IEA
GO:0043130	GO-mf	ubiquitin binding	JGI	N/A	IEA
KOG2760	KOG	Vacuolar sorting protein VPS36	JGI	N/A	IEA
PTHR13128	Panther	FAMILY NOT NAMED	JGI	N/A	IEA
PTHR13128:SF5	Panther		JGI	N/A	IEA
PF04157	PFAM	EAP30/Vps36 family	JGI	N/A	IEA
PF11605	PFAM	Vacuolar protein sorting protein 36 Vps36	JGI	N/A	IEA

Expression Patterns of Glyma.08g228000

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.08g228000 not represented in the dataset	Glyma.08g228000 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Gene model name correspondences to Glyma.08g228000 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma08g24460	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.08g228000

Limit To All Plant Sequences

>Glyma.08g228000.2 sequence-type=transcript locus=Glyma.08g228000 ID=Glyma.08g228000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GGACATCTATTCTCCCACTAGAAGAAGTCTAGAACTATAGCTGCCACTTTCAGAACGACGTCGAACCTCGCTTTTCGCCGATGGCCGGAAACTGCTTGCCGCCGGTGAAGCTCACCGGCAGCGGCCGCCCGGTGCTCGAACCCAACGAAATCGAGTGCTTCTTCCTCTCCGGCGTTGACCTTCTCAGCGAAGACGACCCCAGCTTCCCTCACCTCAAATCTGGCCTCCTCATCCTCACCACGCACCGCCTACTCTGGCTCCCGGACTccgccgcatccgccggcggcaccgccggcgccatccccctcgccgccgTCTCCCACATTTTCTCCCCCAAGATGTCCCTGCGGAAGGTGTTCGCCTCGCCGCGGGTCCGGTTCCAGGTGTCACTGTCGCCGGAGGGAAGGGTCTCCGCGGCGGGTTCGCGATCGGTGGTGGCGACGGCGGTGGTGAGAGGGAAGGGGGATTGCGACGCGTTTTTGGCGAAGTTTACGGAGAATTGCCGCGCCAGGGCGTGGCAGGAGGCGGAGAGTGGGTCCAGTTCGGGGTCGAATTCGGCAGTGATGGCGGCAACAGCGACATCATCATCGTCGGGCGGGATTTATTCGAGCGACGGAACGGTGAGGATGGTGGGAGTGTCTGGGATACTGAGGAAGGAGCAGGAAATGTGGGAGAGTACTGATAGGAGCTTGCAGGAGGCTTTTCAGGATTTGAATGCTCTCATGAGCAAGGCTAAAGAGATGGTGATGCTAGCAGAGAAAATGAGGCTAAAACTTTTGTCTGGCTCAAATTCTCAAACCAATGCAACTAATGATGAGGAGATGGGTTCGAAGGAAGAAATGCAAGATTGGTTATTGAGTGTTGGTATTATATCCCCTGTTACGAAAGAGTCTGCGGGTGCTTTGTATCATCAACAACTTTCTCGTCAGTTGGCAGATTTTGTTAAAGTTCCACTTGAGAAAGCTGGGGGAATTATCAATCTTATTGATATATATTGTCTCTTCAACCGTGCTCGTGGCACAGAATTGATCTCACCTGATGATTTGTTGCAAGCATGTTCTCTGTGGGAGAAGTTTGATGTCCAAGTGGTTCTGCGCAAGTTTGATAGTGGAGTCatggtaatacagacgaagtcccacagtgatgaggagGTTTTCAATAAAGTCAAGATGCTTGTTTTGAAACCTGACGCCCTTCGAGCTGGAATAAGTGCTAGTGATGCTGCAAGGACACTAGGGGTTGCTCCAGCAATGGCAAAGGAGCATCTCTTGTCTGCAGAGAGCAAAGGTTTACTATGCAGAGATATCAGCCCTGATGGATTTCGCTTTTATATTAACTTGTTTGTGGAAATTGACCGAGATTATATGTATTTAGTGAAAGATCAGGGAATTTATGCCTCGTGGGTACAGGCTAACGATACTCATGCTTGAGAGTCCCAAGCATGTTTAATTCAAGGTATGCATAAATTTTAAATTGATAAAGCGATGATAAGCAGGAAGGGAAAAATGTACACACACACGCATACAGTTTTACTGTGCTTCAATCAATGTGAGATTTTCATTGTAGAGGACACTTCACATAATCATTCTGTAGAAGGATTATAAATACTTGAAAAGACTCGAAGCAAAACTTATATGTATCATGTCATATCATTCCAAAAGCTATTGTTACTCTTAGCCTAGCTTTCCATACATGATGTATGATGATGTTGAGGATTACTCTGATATCCATCCCCCTTTTTTATTATGATACCAATACTCAACGTGAGTTCTTAATTATTTGTT

Coding sequences of Glyma.08g228000

Limit To All Plant Sequences

>Glyma.08g228000.1 sequence-type=CDS polypeptide=Glyma.08g228000.1.p locus=Glyma.08g228000 ID=Glyma.08g228000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCCGGAAACTGCTTGCCGCCGGTGAAGCTCACCGGCAGCGGCCGCCCGGTGCTCGAACCCAACGAAATCGAGTGCTTCTTCCTCTCCGGCGTTGACCTTCTCAGCGAAGACGACCCCAGCTTCCCTCACCTCAAATCTGGCCTCCTCATCCTCACCACGCACCGCCTACTCTGGCTCCCGGACTCCGCCGCATCCGCCGGCGGCACCGCCGGCGCCATCCCCCTCGCCGCCGTCTCCCACATTTTCTCCCCCAAGATGTCCCTGCGGAAGGTGTTCGCCTCGCCGCGGGTCCGGTTCCAGGTGTCACTGTCGCCGGAGGGAAGGGTCTCCGCGGCGGGTTCGCGATCGGTGGTGGCGACGGCGGTGGTGAGAGGGAAGGGGGATTGCGACGCGTTTTTGGCGAAGTTTACGGAGAATTGCCGCGCCAGGGCGTGGCAGGAGGCGGAGAGTGGGTCCAGTTCGGGGTCGAATTCGGCAGTGATGGCGGCAACAGCGACATCATCATCGTCGGGCGGGATTTATTCGAGCGACGGAACGGTGAGGATGGTGGGAGTGTCTGGGATACTGAGGAAGGAGCAGGAAATGTGGGAGAGTACTGATAGGAGCTTGCAGGAGGCTTTTCAGGATTTGAATGCTCTCATGAGCAAGGCTAAAGAGATGGTGATGCTAGCAGAGAAAATGAGGCTAAAACTTTTGTCTGGCTCAAATTCTCAAACCAATGCAACTAATGATGAGGAGATGGGTTCGAAGGAAGAAATGCAAGATTGGTTATTGAGTGTTGGTATTATATCCCCTGTTACGAAAGAGTCTGCGGGTGCTTTGTATCATCAACAACTTTCTCGTCAGTTGGCAGATTTTGTTAAAGTTCCACTTGAGAAAGCTGGGGGAATTATCAATCTTATTGATATATATTGTCTCTTCAACCGTGCTCGTGGCACAGAATTGATCTCACCTGATGATTTGTTGCAAGCATGTTCTCTGTGGGAGAAGTTTGATGTCCAAGTGGTTCTGCGCAAGTTTGATAGTGGAGTCATGGTAATACAGACGAAGTCCCACAGTGATGAGGAGGTTTTCAATAAAGTCAAGATGCTTGTTTTGAAACCTGACGCCCTTCGAGCTGGAATAAGTGCTAGTGATGCTGCAAGGACACTAGGGGTTGCTCCAGCAATGGCAAAGGAGCATCTCTTGTCTGCAGAGAGCAAAGGTTTACTATGCAGAGATATCAGCCCTGATGGATTTCGCTTTTATATTAACTTGTTTGTGGAAATTGACCGAGATTATATGTATTTTGTTATTTTGCCATTTATGCAGAGTGAAAGATCAGGGAATTTATGCCTCGTGGGTACAGGCTAA

>Glyma.08g228000.2 sequence-type=CDS polypeptide=Glyma.08g228000.2.p locus=Glyma.08g228000 ID=Glyma.08g228000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCCGGAAACTGCTTGCCGCCGGTGAAGCTCACCGGCAGCGGCCGCCCGGTGCTCGAACCCAACGAAATCGAGTGCTTCTTCCTCTCCGGCGTTGACCTTCTCAGCGAAGACGACCCCAGCTTCCCTCACCTCAAATCTGGCCTCCTCATCCTCACCACGCACCGCCTACTCTGGCTCCCGGACTCCGCCGCATCCGCCGGCGGCACCGCCGGCGCCATCCCCCTCGCCGCCGTCTCCCACATTTTCTCCCCCAAGATGTCCCTGCGGAAGGTGTTCGCCTCGCCGCGGGTCCGGTTCCAGGTGTCACTGTCGCCGGAGGGAAGGGTCTCCGCGGCGGGTTCGCGATCGGTGGTGGCGACGGCGGTGGTGAGAGGGAAGGGGGATTGCGACGCGTTTTTGGCGAAGTTTACGGAGAATTGCCGCGCCAGGGCGTGGCAGGAGGCGGAGAGTGGGTCCAGTTCGGGGTCGAATTCGGCAGTGATGGCGGCAACAGCGACATCATCATCGTCGGGCGGGATTTATTCGAGCGACGGAACGGTGAGGATGGTGGGAGTGTCTGGGATACTGAGGAAGGAGCAGGAAATGTGGGAGAGTACTGATAGGAGCTTGCAGGAGGCTTTTCAGGATTTGAATGCTCTCATGAGCAAGGCTAAAGAGATGGTGATGCTAGCAGAGAAAATGAGGCTAAAACTTTTGTCTGGCTCAAATTCTCAAACCAATGCAACTAATGATGAGGAGATGGGTTCGAAGGAAGAAATGCAAGATTGGTTATTGAGTGTTGGTATTATATCCCCTGTTACGAAAGAGTCTGCGGGTGCTTTGTATCATCAACAACTTTCTCGTCAGTTGGCAGATTTTGTTAAAGTTCCACTTGAGAAAGCTGGGGGAATTATCAATCTTATTGATATATATTGTCTCTTCAACCGTGCTCGTGGCACAGAATTGATCTCACCTGATGATTTGTTGCAAGCATGTTCTCTGTGGGAGAAGTTTGATGTCCAAGTGGTTCTGCGCAAGTTTGATAGTGGAGTCATGGTAATACAGACGAAGTCCCACAGTGATGAGGAGGTTTTCAATAAAGTCAAGATGCTTGTTTTGAAACCTGACGCCCTTCGAGCTGGAATAAGTGCTAGTGATGCTGCAAGGACACTAGGGGTTGCTCCAGCAATGGCAAAGGAGCATCTCTTGTCTGCAGAGAGCAAAGGTTTACTATGCAGAGATATCAGCCCTGATGGATTTCGCTTTTATATTAACTTGTTTGTGGAAATTGACCGAGATTATATGTATTTAGTGAAAGATCAGGGAATTTATGCCTCGTGGGTACAGGCTAACGATACTCATGCTTGA

Predicted protein sequences of Glyma.08g228000

Limit To All Plant Sequences

>Glyma.08g228000.1.p sequence-type=predicted peptide transcript=Glyma.08g228000.1 locus=Glyma.08g228000 ID=Glyma.08g228000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAGNCLPPVKLTGSGRPVLEPNEIECFFLSGVDLLSEDDPSFPHLKSGLLILTTHRLLWLPDSAASAGGTAGAIPLAAVSHIFSPKMSLRKVFASPRVRFQVSLSPEGRVSAAGSRSVVATAVVRGKGDCDAFLAKFTENCRARAWQEAESGSSSGSNSAVMAATATSSSSGGIYSSDGTVRMVGVSGILRKEQEMWESTDRSLQEAFQDLNALMSKAKEMVMLAEKMRLKLLSGSNSQTNATNDEEMGSKEEMQDWLLSVGIISPVTKESAGALYHQQLSRQLADFVKVPLEKAGGIINLIDIYCLFNRARGTELISPDDLLQACSLWEKFDVQVVLRKFDSGVMVIQTKSHSDEEVFNKVKMLVLKPDALRAGISASDAARTLGVAPAMAKEHLLSAESKGLLCRDISPDGFRFYINLFVEIDRDYMYFVILPFMQSERSGNLCLVGTG*

>Glyma.08g228000.2.p sequence-type=predicted peptide transcript=Glyma.08g228000.2 locus=Glyma.08g228000 ID=Glyma.08g228000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAGNCLPPVKLTGSGRPVLEPNEIECFFLSGVDLLSEDDPSFPHLKSGLLILTTHRLLWLPDSAASAGGTAGAIPLAAVSHIFSPKMSLRKVFASPRVRFQVSLSPEGRVSAAGSRSVVATAVVRGKGDCDAFLAKFTENCRARAWQEAESGSSSGSNSAVMAATATSSSSGGIYSSDGTVRMVGVSGILRKEQEMWESTDRSLQEAFQDLNALMSKAKEMVMLAEKMRLKLLSGSNSQTNATNDEEMGSKEEMQDWLLSVGIISPVTKESAGALYHQQLSRQLADFVKVPLEKAGGIINLIDIYCLFNRARGTELISPDDLLQACSLWEKFDVQVVLRKFDSGVMVIQTKSHSDEEVFNKVKMLVLKPDALRAGISASDAARTLGVAPAMAKEHLLSAESKGLLCRDISPDGFRFYINLFVEIDRDYMYLVKDQGIYASWVQANDTHA*

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