Glyma.08g216700

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Report for Sequence Feature Glyma.08g216700

Feature Type:	gene_model
Chromosome:	Gm08
Start:	17592439
stop:	17597182
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.08g216700

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G15860.1	AT	Domain of unknown function (DUF298)	JGI	N/A	IEA
GO:0045116	GO-bp	protein neddylation	EnsemblGenomes	N/A	IEA
GO:0051443	GO-bp	positive regulation of ubiquitin-protein transferase activity	EnsemblGenomes	N/A	IEA
GO:0000151	GO-cc	ubiquitin ligase complex	EnsemblGenomes	N/A	IEA
GO:0016020	GO-cc	membrane	EnsemblGenomes	N/A	IEA
GO:0016021	GO-cc	integral component of membrane	EnsemblGenomes	N/A	IEA
GO:0031624	GO-mf	ubiquitin conjugating enzyme binding	EnsemblGenomes	N/A	IEA
GO:0032182	GO-mf	ubiquitin-like protein binding	EnsemblGenomes	N/A	IEA
GO:0097602	GO-mf	cullin family protein binding	EnsemblGenomes	N/A	IEA
KOG3077	KOG	Uncharacterized conserved protein	JGI	N/A	IEA
PTHR12281	Panther	RP42 RELATED	JGI	N/A	IEA
PF03556	PFAM	Cullin binding	JGI	N/A	IEA

Expression Patterns of Glyma.08g216700

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.08g216700 not represented in the dataset	Glyma.08g216700 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.08g216700

Paralog	Evidence	Comments
Glyma.07g025700	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.08g216700 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma08g23170	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.08g216700

Limit To All Plant Sequences

>Glyma.08g216700.2 sequence-type=transcript locus=Glyma.08g216700 ID=Glyma.08g216700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
CaccccacaccacaacttcagcgcatccacgtcatcaccctcaacctcaacctcTCCGAGCGAGAACCAGACACAAGAAAGAAAACGTGTTGCGTCAGTGTTACCCCTTTCTCCTTCTCTTTATCTTTCCTGAATTTGGCGCGTTTCGATTCTTCTTCTTCCGAATCAGAGAGAGTCTGGATTTCTTGTTGAAGATGCGACGCTCTTCTGCATCCAAAAAGACGGGTCAATCCAATTCCACCCCCATCGCCGCCGATCTCTTCCGCTCCGCTTCAAGTAAGGCAAGCTCGAAGGAATCAGAGCGAATTGATAGTCTATTCTATTCGTATGCCAATGGGTCTACTGGGTTGATTGACCCAGAAGGAATTGAAACACTTTGTGCTGATATGGAGGTGGACCATACAGATGTGAGGGTTTTGATGCTTGCGTGGAAAATGAAAGCTGAGGAGCAAGGATATTTTACCTTGGATGAGTGGAGGAGAGGCTTAAAAGCATTAAGGGCCGATACTGTAAGTAAATTGAAGAAGGCACTCCCAGACCTAGAAAAAGAGGTCAGGAGGCCATCAAACTTTGCAGATTTCTATTCTTATGCTTTCCAATATTGTTTAACAGAGGAGAAACAGAAAAGCATTGATATAGAGAGCATTTGTGAGTTACTTACTCTTGTTTTGGGTTCAACATTTCCAGCCCAAGTCAACTTGTTTGTGGAATATTTGAAGACTCAAAATGATTACAAGGTCATAAACATGGATCAATGGATGGGATTTTTCCGCTTTTGCAATGAGATAAGTTTTCCAACCCTTAATGACTATGATTCTGAACTTGCCTGGCCCTTGATCTTGGATAACTTCGTTGAATGGCTGCGAGAAAAACAAAAATAATCGATAAGCCACCCGATTCTCTGTAACTGCAACCACTGCACCCCTTTTAAGAGAAACTGTCGGATTCTGCAATTAAATCAGATAGATGCCTTGCGGCTCCGTTTATTATACTTAACAAGTTATTGTTCTTTTGTTTGCCCAGTTTCTTATTTTGGGCATTTTAAACACAAACCATTATTACTTGTATTTACATTTTCCATTATATGCTATAGGTGCAGTTGAGGCTAGATACAAGCTTTACATTGTGACCACTGCCAATGCCAACAACATTTATCATACATATAAGAGCTTTTATAGAACTGCCAATGCCAAACCTTTATGTACGTGGGAATCAAGGTTACCAAATCAGGCTAATTTTTAATTTGTGAATTGCCAAATTCAGAGACAATGAAAAATAATTTTAAATATATCATATATAGATATCTAGTGTTCCAAGTAGTATATACTAATTTTAAATTAGAAATATATAAAACAATTTAAC

>Glyma.08g216700.3 sequence-type=transcript locus=Glyma.08g216700 ID=Glyma.08g216700.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
CaccccacaccacaacttcagcgcatccacgtcatcaccctcaacctcaacctcTCCGAGCGAGAACCAGACACAAGAAAGAAAACGTGTTGCGTCAGTGTTACCCCTTTCTCCTTCTCTTTATCTTTCCTGAATTTGGCGCGTTTCGATTCTTCTTCTTCCGAATCAGAGAGAGTCTGGATTTCTTGTTGAAGATGCGACGCTCTTCTGCATCCAAAAAGACGGGTCAATCCAATTCCACCCCCATCGCCGCCGATCTCTTCCGCTCCGCTTCAAGTAAGGCAAGCTCGAAGGAATCAGAGCGAATTGATAGTCTATTCTATTCGTATGCCAATGGGTCTACTGGGTTGATTGACCCAGAAGGAATTGAAACACTTTGTGCTGATATGGAGGTGGACCATACAGATGTGAGGGTTTTGATGCTTGCGTGGAAAATGAAAGCTGAGGAGCAAGGATATTTTACCTTGGATGAGTGGAGGAGAGGCTTAAAAGCATTAAGGGCCGATACTGTAAGTAAATTGAAGAAGGCACTCCCAGACCTAGAAAAAGAGGTCAGGAGGCCATCAAACTTTGCAGATTTCTATTCTTATGCTTTCCAATATTGTTTAACAGAGGAGAAACAGAAAAGCATTGATATAGAGAGCATTTGTGAGTTACTTACTCTTGTTTTGGGTTCAACATTTCCAGCCCAAGTCAACTTGTTTGTGGAATATTTGAAGACTCAAAATGATTACAAGGTCATAAACATGGATCAATGGATGGGATTTTTCCGCTTTTGCAATGAGATAAGTTTTCCAACCCTTAATGACTATGATTCTGAACTTGCCTGGCCCTTGATCTTGGATAACTTCGTTGAATGGCTGCGAGAAAAACAAAAATAATCGATAAGCCACCCGATTCTCTGTAACTGCAACCACTGGTGCAGTTGAGGCTAGATACAAGCTTTACATTGTGACCACTGCCAATGCCAACAACATTTATCATACATATAAGAGCTTTTATAGAACTGCCAATGCCAAACCTTTATGTACGTGGGAATCAAGGTTACCAAATCAGGCTAATTTTTAATTTGTGAATTGCCAAATTCAGAGACAATGAAAAATAATTTTAAATATATCATATATAGATATCTAGTGTTCCAAGTAGTATATACTAATTTTAAATTAGAAATATATAAAACAATTTAAC

Coding sequences of Glyma.08g216700

Limit To All Plant Sequences

>Glyma.08g216700.1 sequence-type=CDS polypeptide=Glyma.08g216700.1.p locus=Glyma.08g216700 ID=Glyma.08g216700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCGACGCTCTTCTGCATCCAAAAAGACGGGTCAATCCAATTCCACCCCCATCGCCGCCGATCTCTTCCGCTCCGCTTCAAGTAAGGCAAGCTCGAAGGAATCAGAGCGAATTGATAGTCTATTCTATTCGTATGCCAATGGGTCTACTGGGTTGATTGACCCAGAAGGAATTGAAACACTTTGTGCTGATATGGAGGTGGACCATACAGATGTGAGGGTTTTGATGCTTGCGTGGAAAATGAAAGCTGAGGAGCAAGGATATTTTACCTTGGATGAGTGGAGGAGAGGCTTAAAAGCATTAAGGGCCGATACTGTAAGTAAATTGAAGAAGGCACTCCCAGACCTAGAAAAAGAGGTCAGGAGGCCATCAAACTTTGCAGATTTCTATTCTTATGCTTTCCAATATTGTTTAACAGAGGAGAAACAGAAAAGCATTGATATAGAGAGCATTTGTGAGTTACTTACTCTTGTTTTGGGTTCAACATTTCCAGCCCAAGTCAACTTGTTTGTGGAATATTTGAAGACTCAAAATGATTACAAGGTCATAAACATGGATCAATGGATGGGATTTTTCCGCTTTTGCAATGAGATAAGTTTTCCAACCCTTAATGACTATGATTCTGAACTTGCCTGGCCCTTGATCTTGGATAACTTCGTTGAATGGCTGCGAGAAAAACAAAAATAA

>Glyma.08g216700.2 sequence-type=CDS polypeptide=Glyma.08g216700.2.p locus=Glyma.08g216700 ID=Glyma.08g216700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCGACGCTCTTCTGCATCCAAAAAGACGGGTCAATCCAATTCCACCCCCATCGCCGCCGATCTCTTCCGCTCCGCTTCAAGTAAGGCAAGCTCGAAGGAATCAGAGCGAATTGATAGTCTATTCTATTCGTATGCCAATGGGTCTACTGGGTTGATTGACCCAGAAGGAATTGAAACACTTTGTGCTGATATGGAGGTGGACCATACAGATGTGAGGGTTTTGATGCTTGCGTGGAAAATGAAAGCTGAGGAGCAAGGATATTTTACCTTGGATGAGTGGAGGAGAGGCTTAAAAGCATTAAGGGCCGATACTGTAAGTAAATTGAAGAAGGCACTCCCAGACCTAGAAAAAGAGGTCAGGAGGCCATCAAACTTTGCAGATTTCTATTCTTATGCTTTCCAATATTGTTTAACAGAGGAGAAACAGAAAAGCATTGATATAGAGAGCATTTGTGAGTTACTTACTCTTGTTTTGGGTTCAACATTTCCAGCCCAAGTCAACTTGTTTGTGGAATATTTGAAGACTCAAAATGATTACAAGGTCATAAACATGGATCAATGGATGGGATTTTTCCGCTTTTGCAATGAGATAAGTTTTCCAACCCTTAATGACTATGATTCTGAACTTGCCTGGCCCTTGATCTTGGATAACTTCGTTGAATGGCTGCGAGAAAAACAAAAATAA

>Glyma.08g216700.3 sequence-type=CDS polypeptide=Glyma.08g216700.3.p locus=Glyma.08g216700 ID=Glyma.08g216700.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCGACGCTCTTCTGCATCCAAAAAGACGGGTCAATCCAATTCCACCCCCATCGCCGCCGATCTCTTCCGCTCCGCTTCAAGTAAGGCAAGCTCGAAGGAATCAGAGCGAATTGATAGTCTATTCTATTCGTATGCCAATGGGTCTACTGGGTTGATTGACCCAGAAGGAATTGAAACACTTTGTGCTGATATGGAGGTGGACCATACAGATGTGAGGGTTTTGATGCTTGCGTGGAAAATGAAAGCTGAGGAGCAAGGATATTTTACCTTGGATGAGTGGAGGAGAGGCTTAAAAGCATTAAGGGCCGATACTGTAAGTAAATTGAAGAAGGCACTCCCAGACCTAGAAAAAGAGGTCAGGAGGCCATCAAACTTTGCAGATTTCTATTCTTATGCTTTCCAATATTGTTTAACAGAGGAGAAACAGAAAAGCATTGATATAGAGAGCATTTGTGAGTTACTTACTCTTGTTTTGGGTTCAACATTTCCAGCCCAAGTCAACTTGTTTGTGGAATATTTGAAGACTCAAAATGATTACAAGGTCATAAACATGGATCAATGGATGGGATTTTTCCGCTTTTGCAATGAGATAAGTTTTCCAACCCTTAATGACTATGATTCTGAACTTGCCTGGCCCTTGATCTTGGATAACTTCGTTGAATGGCTGCGAGAAAAACAAAAATAA

Predicted protein sequences of Glyma.08g216700

Limit To All Plant Sequences

>Glyma.08g216700.1.p sequence-type=predicted peptide transcript=Glyma.08g216700.1 locus=Glyma.08g216700 ID=Glyma.08g216700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MRRSSASKKTGQSNSTPIAADLFRSASSKASSKESERIDSLFYSYANGSTGLIDPEGIETLCADMEVDHTDVRVLMLAWKMKAEEQGYFTLDEWRRGLKALRADTVSKLKKALPDLEKEVRRPSNFADFYSYAFQYCLTEEKQKSIDIESICELLTLVLGSTFPAQVNLFVEYLKTQNDYKVINMDQWMGFFRFCNEISFPTLNDYDSELAWPLILDNFVEWLREKQK*

>Glyma.08g216700.2.p sequence-type=predicted peptide transcript=Glyma.08g216700.2 locus=Glyma.08g216700 ID=Glyma.08g216700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MRRSSASKKTGQSNSTPIAADLFRSASSKASSKESERIDSLFYSYANGSTGLIDPEGIETLCADMEVDHTDVRVLMLAWKMKAEEQGYFTLDEWRRGLKALRADTVSKLKKALPDLEKEVRRPSNFADFYSYAFQYCLTEEKQKSIDIESICELLTLVLGSTFPAQVNLFVEYLKTQNDYKVINMDQWMGFFRFCNEISFPTLNDYDSELAWPLILDNFVEWLREKQK*

>Glyma.08g216700.3.p sequence-type=predicted peptide transcript=Glyma.08g216700.3 locus=Glyma.08g216700 ID=Glyma.08g216700.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MRRSSASKKTGQSNSTPIAADLFRSASSKASSKESERIDSLFYSYANGSTGLIDPEGIETLCADMEVDHTDVRVLMLAWKMKAEEQGYFTLDEWRRGLKALRADTVSKLKKALPDLEKEVRRPSNFADFYSYAFQYCLTEEKQKSIDIESICELLTLVLGSTFPAQVNLFVEYLKTQNDYKVINMDQWMGFFRFCNEISFPTLNDYDSELAWPLILDNFVEWLREKQK*

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