SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G80410.1 | AT | tetratricopeptide repeat (TPR)-containing protein | JGI | N/A | IEA |
| GO:0017196 | GO-bp | N-terminal peptidyl-methionine acetylation | EnsemblGenomes | N/A | IEA |
| GO:0005737 | GO-cc | cytoplasm | EnsemblGenomes | N/A | IEA |
| GO:0004596 | GO-mf | peptide alpha-N-acetyltransferase activity | EnsemblGenomes | N/A | IEA |
| GO:0005515 | GO-mf | protein binding | EnsemblGenomes | N/A | IEA |
| GO:0005515 | GO-mf | protein binding | JGI | N/A | IEA |
| KOG1156 | KOG | N-terminal acetyltransferase | JGI | N/A | IEA |
| PTHR22767 | Panther | N-TERMINAL ACETLYTRANSFERASE-RELATED | JGI | N/A | IEA |
| PTHR22767:SF2 | Panther | NAT1 | JGI | N/A | IEA |
| PF07719 | PFAM | Tetratricopeptide repeat | JGI | N/A | IEA |
| PF12569 | PFAM | NMDA receptor-regulated protein 1 | JGI | N/A | IEA |
| GN7V-68417 | SoyCyc9-rxn | N-terminal methionine Nα-acetyltransferase | Plant Metabolic Network | ISS |
|
Glyma.08g207800 not represented in the dataset |
Glyma.08g207800 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.07g034300 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma08g22180 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.08g207800.1 sequence-type=CDS polypeptide=Glyma.08g207800.1.p locus=Glyma.08g207800 ID=Glyma.08g207800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGGCGCTTCTCTGCCCTCCAAGGAGGCCAACCTCTTCAAGCTTATTGTCAAATCATATGAAACCAAACAATATAAAAAGGGTCTCAAAGCAGCTGATGCAATTTTGAAAAAATTTCCAGACCATGGAGAAACTTTATCGATGAAGGGTTTGACATTAAATTGCATGGACCGTAAGTCTGAAGCATACGAACTTGTTCGGCAAGGATTAAAGAATGACCTTAAAAGTCATGTTTGCTGGCATGTTTATGGTCTCCTTTATCGGTCAGACAGAGAATACAGGGAGGCGATCAAGTGCTATCGAAATGCACTGAGAATTGATCCCGACAATATTGAAATTCTTCGTGACCTATCACTCCTACAGGCACAAATGCGAGATTTGTCAGGCTTTGTCGAGACAAGACAACAACTTTTGACTTTGAAGCCAAATCATCGCATGAACTGGATTGGATTTTCTGTAGCCCATCATTTGAACTCTAATGCATCCAAAGCAGTTGAAATTTTGGAAGCATATGAAGGGACTTTGGAAGAGGATCATCCTCCAGAAAATGAACGGTGTGAGCATGGGGAAATGCTTTTATACAAGATCTCATTGTTAGAGGAATGCGGGTTTCTTGAGAGAGCTCTGGAGGAGTTGCACAAAAAAGAATCTAAAATTGTTGATAAACTTGTATACAAAGAACAAGAGGTTTCACTTTTAGTAAAGCTTGGTCACCTAGAAGAAGGCGAAGCTTTGTACCAGGCATTACTTTCCATGAATCCTGATAATTATAGATATTATGAAGGTCTCCAAAAGTGTGTTGGATTATATTTAGAAGATGGCCAGTACTCTCCTGATCAAATAGATCGGTTAGATTCATTGTACAAAACACTTGTACAACAATATAAGTGGTCTTCTGCTGTTAAGAGAATACCACTAGATTTTCTACAAGGTGACAAATTTCGAGAAGCAGCAGACAATTATATTAGGCCTCTCCTAACCAAGGGAGTTCCATCTCTGTTCTCTGATCTATCATCTTTGTACAATCATCCTGGGAAGGCAGACATTTTGGAACAACTTATTCTTGAGTTAGAGCGTTCAATTAGGATGTCTGGCCAATATCCTGGAAGGATGGACAAAGAACCTCCTTCAACTCTCATGTGGACTTTGTTTTTATTGGCTCAGCATTATGACAGGCGAGGCCAATATGAAGTTGCTCTTTCTAAAATTGATGAAGCTATAGAACATACACCTACAGTCATTGATCTATATTCTGTTAAGAGTCGGATACTGAAGCATGCTGGTGATTTGGTTGCTGCTGCTGCATTTGCAGATGAAGCTAGGTGTATGGATCTTGCCGATCGCTATGTTAATAGTGAATGTGTAAAGCGCATGTTGCAGGCTGATCAGGTGGCTTTGGCTGAAAAAACTGCTGTATTGTTCACAAAAGATGGGGATCAACACAATAACCTTCATGACATGCAGTGCATGTGGTATGAGCTTGCCTCAGGTGAAAGCTATTTCCGTCAAGGTGATCTTGGACGGGCACTCAAGAAATTTTTAGCAGTGGAGAAGCATTATGCTGATATTACTGAGGACCAATTTGATTTTCATTCATACTGCTTACGGAAAATGACTTTGTGTACTTATGTGGAAATGCTTAAATTTCAAGACCAATTGCACTCACATGCATATTTTCATAAAGCAGCAGCTGGTGCTATCAGAGGCTATATTAAGTTGCATGATTCTCCCCCAAAGTCTACAGCAGAGGAAGATGATAATATGTCAAAGTTGCTTCCTTCTCAGAAGAAGAAAATGAGACAAAAGCAGAGAAAGGCAGAAGCAAGAGCCAAAAAGGAGGCAGAAGAGAAGAATGAAGAGTCAAGTGCCAGTGGGGTATCAAAGTCTGGGAAGCGGCACATAAAACCTGTTGACCCTGATCCAAACGGAGAGAAGTTGTTGCAGGTTGAAGATCCACTGTCAGAAGCTACTAAATACTTGAAGTTGCTGCAGAAGAATTCCCCTGATTCATTGGAGACGCACTTGCTCTCTTTTGAATTATATACAAGGAAACAAAAGATTTTGCTTGCCTTGCAGGCTGTAAAGCAGTTACTGAGATTGGATGCTGAACACCCTGATTCTCATCGTTGTTTGATTAAATTCTTCCATAAAGTGGGATCCATGAATGCTTCTGTGACTGACAGTGAGAAACTGATTTGGAGTGTCTTAGAGGCTGAGCGCCCAACTATTAGTCAGCTGCATGAGAAATCCCTGTTTGAGGCAAACAACTCATTCCTTGAAAAACATAAAGATTCTTTGATGCATAGAGCAGCTTTTGCAGAAATATTGCATATTTTGGATTCAAACAGAAAGTCTGAGGCTGTTAAGTTCATTGAAGAGTCAACAAATAACATTGTGCCCAGAAATGGAGCACTTGGACCAATCAGGGAATGGAATCTTAAAGACTGTATTGCAGTTCACAAGCTTCTTGGAACAGTTCTTGCTGATCAGGATGCTGCATTGAGATGGAAGGTGCGTTGTGCAGAGTACTTCCCATATTCTACATACTTTGAGGGATGCCACAGCTCTGCCTCTCCCAACTCGGCCTTCAATCAGTTACGTAAGAACTCTGAAAATGAGAGTCCTAACCATTCAGTGGGTGGTCAAAATGTGGGCTCCATCACATCAAACGGGAAACTAGAGGCATTTAAAGATCTCACTATCTAA
>Glyma.08g207800.1.p sequence-type=predicted peptide transcript=Glyma.08g207800.1 locus=Glyma.08g207800 ID=Glyma.08g207800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MGASLPSKEANLFKLIVKSYETKQYKKGLKAADAILKKFPDHGETLSMKGLTLNCMDRKSEAYELVRQGLKNDLKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLSGFVETRQQLLTLKPNHRMNWIGFSVAHHLNSNASKAVEILEAYEGTLEEDHPPENERCEHGEMLLYKISLLEECGFLERALEELHKKESKIVDKLVYKEQEVSLLVKLGHLEEGEALYQALLSMNPDNYRYYEGLQKCVGLYLEDGQYSPDQIDRLDSLYKTLVQQYKWSSAVKRIPLDFLQGDKFREAADNYIRPLLTKGVPSLFSDLSSLYNHPGKADILEQLILELERSIRMSGQYPGRMDKEPPSTLMWTLFLLAQHYDRRGQYEVALSKIDEAIEHTPTVIDLYSVKSRILKHAGDLVAAAAFADEARCMDLADRYVNSECVKRMLQADQVALAEKTAVLFTKDGDQHNNLHDMQCMWYELASGESYFRQGDLGRALKKFLAVEKHYADITEDQFDFHSYCLRKMTLCTYVEMLKFQDQLHSHAYFHKAAAGAIRGYIKLHDSPPKSTAEEDDNMSKLLPSQKKKMRQKQRKAEARAKKEAEEKNEESSASGVSKSGKRHIKPVDPDPNGEKLLQVEDPLSEATKYLKLLQKNSPDSLETHLLSFELYTRKQKILLALQAVKQLLRLDAEHPDSHRCLIKFFHKVGSMNASVTDSEKLIWSVLEAERPTISQLHEKSLFEANNSFLEKHKDSLMHRAAFAEILHILDSNRKSEAVKFIEESTNNIVPRNGALGPIREWNLKDCIAVHKLLGTVLADQDAALRWKVRCAEYFPYSTYFEGCHSSASPNSAFNQLRKNSENESPNHSVGGQNVGSITSNGKLEAFKDLTI*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
