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A previous version of this gene model can be found here:
Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
---|---|---|---|---|---|
AT1G15240.2 | AT | Phox-associated domain;Phox-like;Sorting nexin, C-terminal | JGI | N/A | IEA |
GO:0007154 | GO-bp | cell communication | JGI | N/A | IEA |
GO:0016020 | GO-cc | membrane | EnsemblGenomes | N/A | IEA |
GO:0016021 | GO-cc | integral component of membrane | EnsemblGenomes | N/A | IEA |
GO:0005515 | GO-mf | protein binding | JGI | N/A | IEA |
GO:0035091 | GO-mf | phosphatidylinositol binding | EnsemblGenomes | N/A | IEA |
GO:0035091 | GO-mf | phosphatidylinositol binding | JGI | N/A | IEA |
KOG2101 | KOG | Intermediate filament-like protein, sorting nexins, and related proteins containing PX (PhoX) domain(s) | JGI | N/A | IEA |
PTHR22999 | Panther | PX SERINE/THREONINE KINASE (PXK) | JGI | N/A | IEA |
PTHR22999:SF1 | Panther | JGI | N/A | IEA | |
PF00787 | PFAM | PX domain | JGI | N/A | IEA |
PF02194 | PFAM | PXA domain | JGI | N/A | IEA |
PF08628 | PFAM | Sorting nexin C terminal | JGI | N/A | IEA |
Glyma.08g205400 not represented in the dataset |
Glyma.08g205400 not represented in the dataset |
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
Paralog | Evidence | Comments |
---|---|---|
Glyma.07g004800 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
Corresponding Name | Annotation Version | Evidence | Comments |
---|---|---|---|
Glyma08g21950 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.08g205400.1 sequence-type=CDS polypeptide=Glyma.08g205400.1.p locus=Glyma.08g205400 ID=Glyma.08g205400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGAACATGCCGCCGAAGCCGAACCAGGTGGCTGTGAGAGACCTCGTCGAGGAAGCTAAGAAACGGATCGTCATCCTCGTCATATGCGTCGTAGGACTCTCCTATCTCATGTCCTTGACAAGCTCCTCAGTTTGGGTCAACTTGCCAGCTGCAGCCTCCTTAATTATTATTCTCCGCTATTTATCACTAGATTTTGAAATGAAGAGAAAAGCTGCAGCATACAACAATAAAGCAGGCTCCACCAATGTTCAGTCTTCAAAGAAGCCTGTTGAAAATCATAAAGTTATTGCAAAGTTTGAGTGGAGAACAAAAGTGAATTCTCCTGTTGTTGAGGATGCAATCGATAACTTCACCAGACATTTAATTTCTGAGTGGGTGACAGATCTTTGGTATTCTCGCTTAACACCAGACAAAGAGGGTCCCGAGGAGTTAGTGCAAATAATTAATGGTGTTCTTGGGGAAATTTCCGGACGCATGAGAAACATAAATTTGATAGATTTTTTAATAAGGGATCTTATTAATCTCATTTGCACACATTTGGAGCTGTTTCGTGCTGCCCACTCAAAGATTGAAAAGCAACATACAGGTTCATTAACAATCGAAAGTCAAGACATGGAACTAAAAATTGTTTTGGCTGCTGAGAACAAATTGCATCCTGCTTTATTTTCTGCAGAAGCCGAGCATAAGGTTTTGCAGCATCTGATGACAGGTCTTATGCATGTTACTTTCAAGTCTGAGGATTTACAGTGTTCTTTCTTTCGATATACTGTCAGGGAGCTTCTTGCATGTGCTGTAATACGGCCTGTCCTAAACTTAGCAAATCCAAGATTTGTTAATGAAAGAATTGAATCTGTGGTAGTTAACAAGACCAAGGTTAACAAGGGGGTTCCTGCAGCTCAAGAGGCATCTCACACTAAACCAGATGAGATACAAATCTCATCTGATGATTTCTCCAAGACTTCAGATCCTTCTGTTACTGGTGTTGAGCTTGTGCAGCTAAGGAATGGTCCATCTAAAAATGCAGAGCCATGTGCTAAAAATAATGCCCGTGATAATATTACTAAAGATCCGTTGCTTTCAATTGATGCTCGACCTTCCCGTACATGGAACTCATTGCCTGCAAACTCCCAAGCTAATGATGACCAAGGCCTTCAACAACATCGCTCAGGAGAGTGGGGAGATATTTTAGATGTCATCTCTCGCAGAAAGACCCAAGCTCTTGCTCCAGAAAATTTTGAGAATATGTGGACTAAAGGCAAAAATTACAAGAAAAAGGATGGTGAGAACCAGTCAAATGAGCATGTTTCGCAGCATCCTGTGGTAGGGAAACTGCCGAAGGTAGATCATATGAAAGCAATATCTGGACCAAAAGAAAGAGATAGTAATTCCAAGCTTATTCTTCCCCCTAAGAGACGCCACATTAATTCTGGACACAGCAGTCAATTCTCTGTAGAAAATACATCCATTAATGTAGACAAGAATGGATCAACTTCAGTTACCTCATACAAAGACGATGAGTCAGTTGCCTCTTTTAAAGATGATGAGCACAGCCACATTTATGGGCAGATGAGTGATTCAGAGAGCAGTACTTCTTATACCTCTGAAGATAACGAAAGTAGTACAGTCACTGGTCTTGATTCCCCTGTCACTAAGGTTTGGGATGGAAAAAGTAATAGAAACCAGGCTGTTTCTTATGTTCATCACCCACTTGAAAATTTTGACCATCACGGTGCAAAGAAAAAGAACAAGAGCCATTCTCGGTATCCAAGATTATCCAGAGCCCAATCTGGCAGTCAAGGGTCTTGGCCTGGTGGTCATAAAACACAAACGTGGCAGGAAGTTGAGAGAACAAGCTTTTTATCTGGAGATGGTCAAGACATACTTAATTCTTCAAAATCACATATAAATTCTGAGGAGTCCAGTGATGATGGTGATATGGAAAGTTTGGGTAGACTTTATAGTGGAGCAGCTGCCTCCTCTTCTGCCTACTCTATTTCTATATCAGATTCTTGTAGTTTGTCTGTTGATCCCCTGAAAAGTTCCTCTGCCGTAGATTCCTTTTACAAGTTGAGATGTGAGGTCTTAGGTGCAAATATTGTGAAGAGTGGCTCAAAAACCTTTGCTGTTTACTCCATATCCGTTACAGATGTAAATAACAACAGTTGGTCGATTAAAAGAAGGTTTCGCCATTTTGAGGAGCTACATCGACGCCTGAAAGAGTTCCCTGAGTATAATCTTCATTTGCCACCAAAACATTTTCTGTCAACTGGTTTAGATGTACCAGTCATTCAAGAGCGGTGTGAATTACTGGATAAATATTTGAAGAAACTCATGCAACTACCAACAGTTTCGGAATCAATTGAAGTATGGGACTTTCTCAGTGTTGATTCTCAGACGTACATATTCTCAAATTCTTTTTCTATCATGGAAACATTATCAGTTGGCTTGAATGCCAAACCATTTCAGAAGACTAAAAACACTTCGAACTTCTCTGCACCTGCAAGTGATCCTGTTTCCTTTCAGAGAGAAAACTGCAGTGCTGAAAGTAAAGAGGCTGTTTTGGGAGCAAGAACTAATGTTGAGGCCAATGGATTGAGGTCAAAAGTAAACAGCACACCTCTTTCTCTGCCAAAAAAGAGTACACATGAACCTAGAAAGTCATTTGACAATTCTAGCAGCAATACAGACATTCAAGCACAGAAGAGTGCACCTTCTCCCAATAACTTGCAGAAGACAGCGAAAGAAAGAGATAATTCAGATCAAGTTTCTGAAGTGCACCATGATGCTTCCGATGCTTTTCCAACAGAGTGGGTGCCACCAAATTTGAGTGTACCCATTTTGGATCTGGTTGATGTTATCTTCCAGGTTCATGATGGTGGATGGATTAGGCGGAAGGCTTTTTGGGTTGCTAAACAAATCTTACAACTAGGAATGGGTGATGCCTTTGATGACTGGTTGATAGAGAAAATTCAGCTTCTCCGTAAGGGTTCAGTGGTTGCTTCAGGGGTCAAGCGAGTTGAGCAAATACTCTGGCCTGATGGAATATTCATAACCAAGCATCCAAATCGACGACCTCCGTCACCTTCTAGTCCATCTCAGAATTCTCCTCATGGCAATCAACCTACACAAGTGTCTTCTCCAAGGTTGGATGATGAGCAGAAACAGGAGGCAGATCGGCGTGCAAAATTTGTATATGAGCTAATGATTGATCATGCACCGCCAGCTATTGTAGGTCTTGTTGGTCGGAAGGAGTACGAGCAATGTGCAAGGGATTTATATTTTTTCCTTCAGTCATCCGTTATCTTGAAGCAGCTGGCTTTTGACATCCTGGAGCTGCTGCTGACATCGGCATTTCCGGAGCTTGATAATGTATTTAAGCAGCTGCATGAAGAAAAGCATAAATTTGGTGAGTTCAGAACACAGTAA
>Glyma.08g205400.1.p sequence-type=predicted peptide transcript=Glyma.08g205400.1 locus=Glyma.08g205400 ID=Glyma.08g205400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MNMPPKPNQVAVRDLVEEAKKRIVILVICVVGLSYLMSLTSSSVWVNLPAAASLIIILRYLSLDFEMKRKAAAYNNKAGSTNVQSSKKPVENHKVIAKFEWRTKVNSPVVEDAIDNFTRHLISEWVTDLWYSRLTPDKEGPEELVQIINGVLGEISGRMRNINLIDFLIRDLINLICTHLELFRAAHSKIEKQHTGSLTIESQDMELKIVLAAENKLHPALFSAEAEHKVLQHLMTGLMHVTFKSEDLQCSFFRYTVRELLACAVIRPVLNLANPRFVNERIESVVVNKTKVNKGVPAAQEASHTKPDEIQISSDDFSKTSDPSVTGVELVQLRNGPSKNAEPCAKNNARDNITKDPLLSIDARPSRTWNSLPANSQANDDQGLQQHRSGEWGDILDVISRRKTQALAPENFENMWTKGKNYKKKDGENQSNEHVSQHPVVGKLPKVDHMKAISGPKERDSNSKLILPPKRRHINSGHSSQFSVENTSINVDKNGSTSVTSYKDDESVASFKDDEHSHIYGQMSDSESSTSYTSEDNESSTVTGLDSPVTKVWDGKSNRNQAVSYVHHPLENFDHHGAKKKNKSHSRYPRLSRAQSGSQGSWPGGHKTQTWQEVERTSFLSGDGQDILNSSKSHINSEESSDDGDMESLGRLYSGAAASSSAYSISISDSCSLSVDPLKSSSAVDSFYKLRCEVLGANIVKSGSKTFAVYSISVTDVNNNSWSIKRRFRHFEELHRRLKEFPEYNLHLPPKHFLSTGLDVPVIQERCELLDKYLKKLMQLPTVSESIEVWDFLSVDSQTYIFSNSFSIMETLSVGLNAKPFQKTKNTSNFSAPASDPVSFQRENCSAESKEAVLGARTNVEANGLRSKVNSTPLSLPKKSTHEPRKSFDNSSSNTDIQAQKSAPSPNNLQKTAKERDNSDQVSEVHHDASDAFPTEWVPPNLSVPILDLVDVIFQVHDGGWIRRKAFWVAKQILQLGMGDAFDDWLIEKIQLLRKGSVVASGVKRVEQILWPDGIFITKHPNRRPPSPSSPSQNSPHGNQPTQVSSPRLDDEQKQEADRRAKFVYELMIDHAPPAIVGLVGRKEYEQCARDLYFFLQSSVILKQLAFDILELLLTSAFPELDNVFKQLHEEKHKFGEFRTQ*
Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||