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Report for Sequence Feature Glyma.08g203400

Feature Type:gene_model
Chromosome:Gm08
Start:16491238
stop:16495603
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.08g203400
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G79810.1AT Pex2/Pex12 N-terminal domain-containing protein / zinc finger (C3HC4-type RING finger) family protein JGI N/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0046872GO-mf metal ion binding EnsemblGenomesN/AIEA
GO:0046872GO-mf metal ion binding JGI N/AIEA
KOG2879 KOG Predicted E3 ubiquitin ligase JGI N/AIEA
PTHR12590Panther PEROXISOMAL PROTEIN RELATED JGI N/AIEA
PF00097PFAM Zinc finger, C3HC4 type (RING finger) JGI N/AIEA
PF04757PFAM Pex2 / Pex12 amino terminal region JGI N/AIEA

Expression Patterns of Glyma.08g203400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.08g203400
ParalogEvidenceComments
Glyma.07g018400 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.08g203400 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma08g21760 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.08g203400
>Glyma.08g203400.2 sequence-type=transcript locus=Glyma.08g203400 ID=Glyma.08g203400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TGACATGGTGAAATGTAATGCAACAACAGTGCTGCCCCTAATGACCAGAACATCCTAATCTCTCTTTCTCTCTCTAAACTAAACAGTAGGGGTagagagagagaaagagagaagaAGCGGTGCATGGACACACCAAACCAAACCAAAATCATCATCATCATCACGCAATGACTCTCCCTTCACACGATGCTTGGATTCACACTTCACACACACTCCTCCCCAGATGGAAATCTCTTTCCCTCCCTCATCAGTCAACTCTTCCAATTTCTATATCAAGAGTTAACCAAGTTGATGCAGCGAGATTGGACGTTGAAATGTCAGCCATGTTGAAAGAACAGTTGGTTAAAGTGTTCTCATTAATGAAGGAATGTTATTTCAGTATGAAGCCGAGCTTGATGCTTTCCTTGAGTTTCTTATTTGGAGGTTCTCAATTTGGGTGGATAAGCCAACCCCAGGCATTGCTCTCATGAACCTGAGGTACAGAGACGAGCGTGCAGTAGAACCAAGAGATAAAGTCCGAACTGGTCTGGAGGGACCTGGACTCACTGTTGCTCAGAAGCTTTGGTATTGTATTGCCACTGTTGGTGGTCAGTATATATGGGCTCGCTTACAATCCTTCTCTGCTTTTCGTAGATGGGGTGATACTGAGCAGAGACCATTGGCTAGACGTTTATGGATCTTGATACAACGGATAGAAGGAATATATAGAGCTGCTTCATTTGGAAACCTGTTGATATTTCTTTGCACTGGAAGATATCGAAATCTTATTGAAAGAGCCTTACGAGCTAGGCTTGTATATGGAAGCCCGAATATGAATCGTGCTGTTAGCTTTGAATATATGAACCGGCAATTAGTTTGGAATGAATTTTCGGAAATGTTATTGTTGCTTCTCCCCCTTCTTAATTCATCATCCGTGAAAAATCTCCTTCGACCTTTTTCTAAAGATAAATCATTAAGTTCAGCTGAGGATGGCTCAGCATGTCCCATTTGTCAGGCTACTCCCACAATTCCTTATGTTGCTCTACCTTGCCAGCACAGATATTGTTACTACTGTCTTAGGACACGATGTGCTGCTGCTCCATCGTTTAGGTGTTCCAGGTGCAGTGAGCCCGTTGTTGCTATGCAACGACATGGTGGTGTCCCTTCAGAATGATTGATTGTTACTAAGAATCAGGGAAACATTCTTTAGAGTTAGGGAGCATTTGATCTACTTACAGAATTAGCATATAAAATACTACCTGAAATTGTGGTGGTATTCTTTTCCCCTTACTTTCTCTttattattattattattattattattattattattattattattattCACATTTAATTGGGAAAACAAATCAAAATATCTTCACAGAATCACTTACTCGGTTCAGTGGGAAGCATTCTTTCCCTTGTAACAATGTATCATTTAGTTACCCCCTCATACATTTCTTTCCGTTATTTTGAAGTTAAACTTCTTGTAAATTGTATGTGTTGTGATTGGATATACATACTAAACGATTAGCTCTCCTATAAACTAAAAAGCTAAGCTATTAAAAGGGGCAGAATATCATTCTGT

>Glyma.08g203400.3 sequence-type=transcript locus=Glyma.08g203400 ID=Glyma.08g203400.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
TGACATGGTGAAATGTAATGCAACAACAGTGCTGCCCCTAATGACCAGAACATCCTAATCTCTCTTTCTCTCTCTAAACTAAACAGTAGGGGTagagagagagaaagagagaagaAGCGGTGCATGGACACACCAAACCAAACCAAAATCATCATCATCATCACGCAATGACTCTCCCTTCACACGATGCTTGGATTCACACTTCACACACACTCCTCCCCAGATGGAAATCTCTTTCCCTCCCTCATCAGCAGTCAACTCTTCCAATTTCTATATCAAGAGTTAACCAAGTTGATGCAGCGAGATTGGACGTTGAAATGTCAGCCATGTTGAAAGAACAGTTGGTTAAAGTGTTCTCATTAATGAAGCCAGGAATGTTATTTCAGTATGAAGCCGAGCTTGATGCTTTCCTTGAGTTTCTTATTTGGAGGTTCTCAATTTGGGTGGATAAGCCAACCCCAGGCATTGCTCTCATGAACCTGAGGTACAGAGACGAGCGTGCAGTAGAACCAAGAGATAAAGTCCGAACTGGTCTGGAGGGACCTGGACTCACTGTTGCTCAGAAGCTTTGGTATTGTATTGCCACTGTTGGTGGTCAGTATATATGGGCTCGCTTACAATCCTTCTCTGCTTTTCGTAGATGGGGTGATACTGAGCAGAGACCATTGGCTAGACGTTTATGGATCTTGATACAACGGATAGAAGGAATATATAGAGCTGCTTCATTTGGAAACCTGTTGATATTTCTTTGCACTGGAAGATATCGAAATCTTATTGAAAGAGCCTTACGAGCTAGGCTTGTATATGGAAGCCCGAATATGAATCGTGCTGTTAGCTTTGAATATATGAACCGGCAATTAGTTTGGAATGAATTTTCGGTACTTCTTCCTCTCTTCATTTTTTACTTAATTTGTGGAATCATATTGGTCACATGAGACCTTTCATTTATTTACTAGTTAAGACAAATGAATGTAAAAATGGGCATAGCTGACTGAATGTTATAGGACCGCAAAGCCCATAACCCTTAGGGCCCCTAAATCTCTTCAGGTTTACACTGGAAGGCCCAAGAATAGTTAGGGCCCTATATTCACTTGGGCAGGAAATGACTAAAAATGGAGGGGAACTAATTATACATCTGTTATATAGGAATGGGAGATA
Coding sequences of Glyma.08g203400
>Glyma.08g203400.1 sequence-type=CDS polypeptide=Glyma.08g203400.1.p locus=Glyma.08g203400 ID=Glyma.08g203400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGACTCTCCCTTCACACGATGCTTGGATTCACACTTCACACACACTCCTCCCCAGATGGAAATCTCTTTCCCTCCCTCATCAGCAGTCAACTCTTCCAATTTCTATATCAAGAGTTAACCAAGTTGATGCAGCGAGATTGGACGTTGAAATGTCAGCCATGTTGAAAGAACAGTTGGTTAAAGTGTTCTCATTAATGAAGCCAGGAATGTTATTTCAGTATGAAGCCGAGCTTGATGCTTTCCTTGAGTTTCTTATTTGGAGGTTCTCAATTTGGGTGGATAAGCCAACCCCAGGCATTGCTCTCATGAACCTGAGGTACAGAGACGAGCGTGCAGTAGAACCAAGAGATAAAGTCCGAACTGGTCTGGAGGGACCTGGACTCACTGTTGCTCAGAAGCTTTGGTATTGTATTGCCACTGTTGGTGGTCAGTATATATGGGCTCGCTTACAATCCTTCTCTGCTTTTCGTAGATGGGGTGATACTGAGCAGAGACCATTGGCTAGACGTTTATGGATCTTGATACAACGGATAGAAGGAATATATAGAGCTGCTTCATTTGGAAACCTGTTGATATTTCTTTGCACTGGAAGATATCGAAATCTTATTGAAAGAGCCTTACGAGCTAGGCTTGTATATGGAAGCCCGAATATGAATCGTGCTGTTAGCTTTGAATATATGAACCGGCAATTAGTTTGGAATGAATTTTCGGAAATGTTATTGTTGCTTCTCCCCCTTCTTAATTCATCATCCGTGAAAAATCTCCTTCGACCTTTTTCTAAAGATAAATCATTAAGTTCAGCTGAGGATGGCTCAGCATGTCCCATTTGTCAGGCTACTCCCACAATTCCTTATGTTGCTCTACCTTGCCAGCACAGATATTGTTACTACTGTCTTAGGACACGATGTGCTGCTGCTCCATCGTTTAGGTGTTCCAGGTGCAGTGAGCCCGTTGTTGCTATGCAACGACATGGTGGTGTCCCTTCAGAATGA

>Glyma.08g203400.2 sequence-type=CDS polypeptide=Glyma.08g203400.2.p locus=Glyma.08g203400 ID=Glyma.08g203400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTTATTTCAGTATGAAGCCGAGCTTGATGCTTTCCTTGAGTTTCTTATTTGGAGGTTCTCAATTTGGGTGGATAAGCCAACCCCAGGCATTGCTCTCATGAACCTGAGGTACAGAGACGAGCGTGCAGTAGAACCAAGAGATAAAGTCCGAACTGGTCTGGAGGGACCTGGACTCACTGTTGCTCAGAAGCTTTGGTATTGTATTGCCACTGTTGGTGGTCAGTATATATGGGCTCGCTTACAATCCTTCTCTGCTTTTCGTAGATGGGGTGATACTGAGCAGAGACCATTGGCTAGACGTTTATGGATCTTGATACAACGGATAGAAGGAATATATAGAGCTGCTTCATTTGGAAACCTGTTGATATTTCTTTGCACTGGAAGATATCGAAATCTTATTGAAAGAGCCTTACGAGCTAGGCTTGTATATGGAAGCCCGAATATGAATCGTGCTGTTAGCTTTGAATATATGAACCGGCAATTAGTTTGGAATGAATTTTCGGAAATGTTATTGTTGCTTCTCCCCCTTCTTAATTCATCATCCGTGAAAAATCTCCTTCGACCTTTTTCTAAAGATAAATCATTAAGTTCAGCTGAGGATGGCTCAGCATGTCCCATTTGTCAGGCTACTCCCACAATTCCTTATGTTGCTCTACCTTGCCAGCACAGATATTGTTACTACTGTCTTAGGACACGATGTGCTGCTGCTCCATCGTTTAGGTGTTCCAGGTGCAGTGAGCCCGTTGTTGCTATGCAACGACATGGTGGTGTCCCTTCAGAATGA

>Glyma.08g203400.3 sequence-type=CDS polypeptide=Glyma.08g203400.3.p locus=Glyma.08g203400 ID=Glyma.08g203400.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGACTCTCCCTTCACACGATGCTTGGATTCACACTTCACACACACTCCTCCCCAGATGGAAATCTCTTTCCCTCCCTCATCAGCAGTCAACTCTTCCAATTTCTATATCAAGAGTTAACCAAGTTGATGCAGCGAGATTGGACGTTGAAATGTCAGCCATGTTGAAAGAACAGTTGGTTAAAGTGTTCTCATTAATGAAGCCAGGAATGTTATTTCAGTATGAAGCCGAGCTTGATGCTTTCCTTGAGTTTCTTATTTGGAGGTTCTCAATTTGGGTGGATAAGCCAACCCCAGGCATTGCTCTCATGAACCTGAGGTACAGAGACGAGCGTGCAGTAGAACCAAGAGATAAAGTCCGAACTGGTCTGGAGGGACCTGGACTCACTGTTGCTCAGAAGCTTTGGTATTGTATTGCCACTGTTGGTGGTCAGTATATATGGGCTCGCTTACAATCCTTCTCTGCTTTTCGTAGATGGGGTGATACTGAGCAGAGACCATTGGCTAGACGTTTATGGATCTTGATACAACGGATAGAAGGAATATATAGAGCTGCTTCATTTGGAAACCTGTTGATATTTCTTTGCACTGGAAGATATCGAAATCTTATTGAAAGAGCCTTACGAGCTAGGCTTGTATATGGAAGCCCGAATATGAATCGTGCTGTTAGCTTTGAATATATGAACCGGCAATTAGTTTGGAATGAATTTTCGGTACTTCTTCCTCTCTTCATTTTTTACTTAATTTGTGGAATCATATTGGTCACATGA
Predicted protein sequences of Glyma.08g203400
>Glyma.08g203400.1.p sequence-type=predicted peptide transcript=Glyma.08g203400.1 locus=Glyma.08g203400 ID=Glyma.08g203400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MTLPSHDAWIHTSHTLLPRWKSLSLPHQQSTLPISISRVNQVDAARLDVEMSAMLKEQLVKVFSLMKPGMLFQYEAELDAFLEFLIWRFSIWVDKPTPGIALMNLRYRDERAVEPRDKVRTGLEGPGLTVAQKLWYCIATVGGQYIWARLQSFSAFRRWGDTEQRPLARRLWILIQRIEGIYRAASFGNLLIFLCTGRYRNLIERALRARLVYGSPNMNRAVSFEYMNRQLVWNEFSEMLLLLLPLLNSSSVKNLLRPFSKDKSLSSAEDGSACPICQATPTIPYVALPCQHRYCYYCLRTRCAAAPSFRCSRCSEPVVAMQRHGGVPSE*

>Glyma.08g203400.2.p sequence-type=predicted peptide transcript=Glyma.08g203400.2 locus=Glyma.08g203400 ID=Glyma.08g203400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLFQYEAELDAFLEFLIWRFSIWVDKPTPGIALMNLRYRDERAVEPRDKVRTGLEGPGLTVAQKLWYCIATVGGQYIWARLQSFSAFRRWGDTEQRPLARRLWILIQRIEGIYRAASFGNLLIFLCTGRYRNLIERALRARLVYGSPNMNRAVSFEYMNRQLVWNEFSEMLLLLLPLLNSSSVKNLLRPFSKDKSLSSAEDGSACPICQATPTIPYVALPCQHRYCYYCLRTRCAAAPSFRCSRCSEPVVAMQRHGGVPSE*

>Glyma.08g203400.3.p sequence-type=predicted peptide transcript=Glyma.08g203400.3 locus=Glyma.08g203400 ID=Glyma.08g203400.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MTLPSHDAWIHTSHTLLPRWKSLSLPHQQSTLPISISRVNQVDAARLDVEMSAMLKEQLVKVFSLMKPGMLFQYEAELDAFLEFLIWRFSIWVDKPTPGIALMNLRYRDERAVEPRDKVRTGLEGPGLTVAQKLWYCIATVGGQYIWARLQSFSAFRRWGDTEQRPLARRLWILIQRIEGIYRAASFGNLLIFLCTGRYRNLIERALRARLVYGSPNMNRAVSFEYMNRQLVWNEFSVLLPLFIFYLICGIILVT*






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