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Report for Sequence Feature Glyma.08g200100

Feature Type:gene_model
Chromosome:Gm08
Start:16183201
stop:16185271
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.08g200100
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G25150.1AT HAD superfamily, subfamily IIIB acid phosphatase JGI N/AIEA
GO:0003993GO-mf acid phosphatase activity JGI N/AIEA
GO:0045735GO-mf nutrient reservoir activity EnsemblGenomesN/AIEA
PTHR11726Panther 60S RIBOSOMAL PROTEIN L10 JGI N/AIEA
PTHR11726:SF1Panther JGI N/AIEA
PF03767PFAM HAD superfamily, subfamily IIIB (Acid phosphatase) JGI N/AIEA
PWY-6348SoyCyc9 phosphate acquisition Plant Metabolic Network ISS
GN7V-64456SoyCyc9-rxn acid phosphatase Plant Metabolic Network ISS

Proteins Associated with Glyma.08g200100
LocusGene SymbolProtein Name
VSP27 Vegetative storage protein 27 kD
VSPB Vegetative storage protein B

Expression Patterns of Glyma.08g200100
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.08g200100
ParalogEvidenceComments
Glyma.07g014500 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.08g200100 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma08g21410 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.08g200100
>Glyma.08g200100.2 sequence-type=transcript locus=Glyma.08g200100 ID=Glyma.08g200100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GAGGCGTTGCCTATTTAAAGAAGCTAACCCTCCACAAGGAATTAAGGTGCAAGAGTTTGTTGTGAGCTATAAGCTAGTTTATCGTGAGGAGAATATGAAGTTGTTTGTTTTCTTTGTTGCTGCAGTAGTTTTGGTAGCATGGCCATGCCATGGCGCAGGCTACCAAAGGTTCCCTCTCCGAATGAAAACTGGCTATGGTGAGCGTTCTTCGGAGGTAAAATGCGCAAGTTTTAGGCTTGCTGTGGAAGCACACAACATCCGAGCCTTTAAAACCATTCCTGAAGAGTGCGTTGAACCAACAAAGGACTACATTAATGGCGAACAATTTAGATCAGACTCTAAAACAGTTAACCAACAAGCTTTCTTTTATGCTAGTGAACGCGAAGTCCATCACAACGACATATTTATATTCGGCATAGATAACACCGTACTCTCTAATATCCCATACTATGAAAAACATGGATATGGGGTGGAGGAATTTAATGAAACCTTATATGATGAATGGGTTAACAAGGGCGACGCACCGGCATTGCCAGAGACTCTTAAAAATTACAACAAGCTGTTGTCTCTTGGCTTCAAGATTGTATTCTTGTCAGGAAGATATCTTGACAAAATGGCCGTAACAGAAGCAAACCTAAAGAAGGCTGGCTTCCACACATGGGAGCAGTTAATTCTCAAGTATGTTTCCTTTTTTCTCTCTATAGATATAACTTATTTATCTTTTATATATAACAAGTGCTGTTGGTTAACAAGTCATTGATATCAATAATACTGAATTCAACCATTTCAAATAATGTGATGAGTTTGAAATACTAATTGGATCTATTTTTGGTTGGTGTAGGGATCCACATCTTATCACTCCAAATGCACTTTCATACAAATCAGCAATGAGAGAGAATCTGTTGAGGCAGGGATACAGAATTGTTGGAATCATTGGAGACCAATGGAGCGATCTGCTTGGAGACCACAGAGGCGAAAGCAGGACCTTTAAGCTTCCTAATCCCATGTACTACATTGAGTAGTACCTTCACCTCTCTCAACAATCTAGCTAGAGTTTGCTCCTATCTATATGTAATAAGGTATGCTGATATGCACTATTCAAATAGGAGCATTAGCTATGTTTGTTAATGTCACTTTATGTTATGTGGGTAAGTCACCTAAGACACTCCACGTACCTACTTGTTGTCTCTTACGCGGCTTTAATAAATCTTCTGCCCTTGTTCCATATTTACTAATTATCCCTTTCTTCACTAAAAGAAAATTGTTATCATTAAGTATTAGTCTT
Coding sequences of Glyma.08g200100
>Glyma.08g200100.1 sequence-type=CDS polypeptide=Glyma.08g200100.1.p locus=Glyma.08g200100 ID=Glyma.08g200100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAGTTGTTTGTTTTCTTTGTTGCTGCAGTAGTTTTGGTAGCATGGCCATGCCATGGCGCAGGCTACCAAAGGTTCCCTCTCCGAATGAAAACTGGCTATGGTGAGCGTTCTTCGGAGGTAAAATGCGCAAGTTTTAGGCTTGCTGTGGAAGCACACAACATCCGAGCCTTTAAAACCATTCCTGAAGAGTGCGTTGAACCAACAAAGGACTACATTAATGGCGAACAATTTAGATCAGACTCTAAAACAGTTAACCAACAAGCTTTCTTTTATGCTAGTGAACGCGAAGTCCATCACAACGACATATTTATATTCGGCATAGATAACACCGTACTCTCTAATATCCCATACTATGAAAAACATGGATATGGGGTGGAGGAATTTAATGAAACCTTATATGATGAATGGGTTAACAAGGGCGACGCACCGGCATTGCCAGAGACTCTTAAAAATTACAACAAGCTGTTGTCTCTTGGCTTCAAGATTGTATTCTTGTCAGGAAGATATCTTGACAAAATGGCCGTAACAGAAGCAAACCTAAAGAAGGCTGGCTTCCACACATGGGAGCAGTTAATTCTCAAGGATCCACATCTTATCACTCCAAATGCACTTTCATACAAATCAGCAATGAGAGAGAATCTGTTGAGGCAGGGATACAGAATTGTTGGAATCATTGGAGACCAATGGAGCGATCTGCTTGGAGACCACAGAGGCGAAAGCAGGACCTTTAAGCTTCCTAATCCCATGTACTACATTGAGTAG

>Glyma.08g200100.2 sequence-type=CDS polypeptide=Glyma.08g200100.2.p locus=Glyma.08g200100 ID=Glyma.08g200100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAGTTGTTTGTTTTCTTTGTTGCTGCAGTAGTTTTGGTAGCATGGCCATGCCATGGCGCAGGCTACCAAAGGTTCCCTCTCCGAATGAAAACTGGCTATGGTGAGCGTTCTTCGGAGGTAAAATGCGCAAGTTTTAGGCTTGCTGTGGAAGCACACAACATCCGAGCCTTTAAAACCATTCCTGAAGAGTGCGTTGAACCAACAAAGGACTACATTAATGGCGAACAATTTAGATCAGACTCTAAAACAGTTAACCAACAAGCTTTCTTTTATGCTAGTGAACGCGAAGTCCATCACAACGACATATTTATATTCGGCATAGATAACACCGTACTCTCTAATATCCCATACTATGAAAAACATGGATATGGGGTGGAGGAATTTAATGAAACCTTATATGATGAATGGGTTAACAAGGGCGACGCACCGGCATTGCCAGAGACTCTTAAAAATTACAACAAGCTGTTGTCTCTTGGCTTCAAGATTGTATTCTTGTCAGGAAGATATCTTGACAAAATGGCCGTAACAGAAGCAAACCTAAAGAAGGCTGGCTTCCACACATGGGAGCAGTTAATTCTCAAGTATGTTTCCTTTTTTCTCTCTATAGATATAACTTATTTATCTTTTATATATAACAAGTGCTGTTGGTTAACAAGTCATTGA
Predicted protein sequences of Glyma.08g200100
>Glyma.08g200100.1.p sequence-type=predicted peptide transcript=Glyma.08g200100.1 locus=Glyma.08g200100 ID=Glyma.08g200100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MKLFVFFVAAVVLVAWPCHGAGYQRFPLRMKTGYGERSSEVKCASFRLAVEAHNIRAFKTIPEECVEPTKDYINGEQFRSDSKTVNQQAFFYASEREVHHNDIFIFGIDNTVLSNIPYYEKHGYGVEEFNETLYDEWVNKGDAPALPETLKNYNKLLSLGFKIVFLSGRYLDKMAVTEANLKKAGFHTWEQLILKDPHLITPNALSYKSAMRENLLRQGYRIVGIIGDQWSDLLGDHRGESRTFKLPNPMYYIE*

>Glyma.08g200100.2.p sequence-type=predicted peptide transcript=Glyma.08g200100.2 locus=Glyma.08g200100 ID=Glyma.08g200100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MKLFVFFVAAVVLVAWPCHGAGYQRFPLRMKTGYGERSSEVKCASFRLAVEAHNIRAFKTIPEECVEPTKDYINGEQFRSDSKTVNQQAFFYASEREVHHNDIFIFGIDNTVLSNIPYYEKHGYGVEEFNETLYDEWVNKGDAPALPETLKNYNKLLSLGFKIVFLSGRYLDKMAVTEANLKKAGFHTWEQLILKYVSFFLSIDITYLSFIYNKCCWLTSH*






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